mRNA_F-serratus_M_contig1000.119.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1000.119.1
Unique NamemRNA_F-serratus_M_contig1000.119.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig1000.119.1 vs. uniprot
Match: A0A6H5JME8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME8_9PHAE)

HSP 1 Score: 202 bits (514), Expect = 2.530e-55
Identity = 128/398 (32.16%), Postives = 199/398 (50.00%), Query Frame = 3
Query:  147 ILNGEISEGVYTRQAPGFETKDSQGRSLIMQLSRSIYGLRQSPKACSVTTDKDLSTICFLPTVSDACVHVKGSGDSYVILTSYVDNLFITGPNDNAM-------------AEVRKVFMEKFTMTDFKDATRILGIEIFQDKERSTISITQALY------------------------------------------YQSIMGSLIFLCQCTRFDICIAVSQEARFMSKPTPVHMGAVKRILRYLRDKPNLHITYSRNSNFELIGFCDALNGTGNPEMARSTSGSMYFLSEGIVHFSTSVQKIAVQSTTEAELIARSSCAKQEIYLCGILGGLG-WRTFRSARIFCDNKGALLLAGQGSYSSRSKHLAIRFMGLRDWIIDETLVIDHVSNKGQLSDILTK 1172
             L  +I E V+  Q PGFE KD  G  ++M+L++S+YGL QSP     T D  L  I F+   SD CV++     + + LT YVD+L + G + +A+             A       ++F MTD  +A+  LG++I +D+E +T++I+Q  Y                                          YQ I+GSL+++ Q  R+DI  A  Q AR M+KP+ VHM A K  LRYL    +  ITY +   F+L  F D+ N   NP+  +STS  +  L+   + F + +Q +   ST EAEL+A +   K+ ++   ++  LG  + F    ++CDN   L   G  S+SSR+KH+A+RF  +R+ + +  + I +V  +  L+DI TK
Sbjct:  244 FLYADIQEEVFVEQPPGFEVKDKDGGDMVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAIKHLLSSGWKLGGIARQXGKLQKRFKMTDLGEASFALGMKIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARSMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGG-FKLATFSDS-NWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGSGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTK 639          
BLAST of mRNA_F-serratus_M_contig1000.119.1 vs. uniprot
Match: A0A6H5K9R3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9R3_9PHAE)

HSP 1 Score: 196 bits (498), Expect = 3.580e-52
Identity = 125/371 (33.69%), Postives = 188/371 (50.67%), Query Frame = 3
Query:  147 ILNGEISEGVYTRQAPGFETKD-SQGRSLIMQLSRSIYGLRQSPKACSVTTDKDLSTICFLPTVSDACVHVKGSGDSYVILTSYVDNLFITGPNDNAMAEVRKVFMEKFTMTDFKDATRILGIEIFQDKERSTISITQALY----------------------------YQSIMGSLIFLCQCTRFDICIAVSQEARFMSKPTPVHMGAVKRILRYLRDKPNLHITYSRNSNFELIGFCDALNGTGNPEMARSTSGSMYFLSEGIVHFSTSVQKIAVQSTTEAELIARSSCAKQEIYLCGILGGLGWRTFRSARIFCDNKGALLLAGQGSYSSRSKHLAIRFMGLRDWIIDETLVIDHVSNKGQLSDILTK 1172
             L   I + V+ + APG + KD + G  ++ +L RS+YGL QSP     T D+ L  I F PT SD CV++ GSGD+ VILT YV+++ I+G + + +A+++K   ++F +TD  +   ILG+++ +  E  T+ ++Q  Y                            YQSI GSL++L QC R+D   AV+Q  R  SKP   H  A K  LRY+R  P+L I + R   F +  F D+  G   P+  +ST+G                         E+EL A S  AK+  YL  +L  L +   +   I+ D+ G L LA    +SSR+KH+A+RF  L++ I    + + HV  +  L+DI TK
Sbjct:  494 FLQPTIDKDVWVKPAPGQDAKDPATGGIMVYKLERSLYGLAQSPVLWYDTIDEVLVVIGFRPTQSDPCVYIHGSGDTLVILTLYVNDILISGKDPDLVADLKKELQDRFEITDIGEVRLILGMKVTRSYENGTLVVSQKGYVKSILESLGMENCNPPADELLGAAESKLYQSITGSLLYLAQCKRYDQSYAVNQLTRACSKPARAHTTAAKHALRYIRGTPDLLIIFKRG-RFRVAAFADSSFGA-IPDNRKSTTGLQ----------------------VESELQAISYGAKEAAYLSSLLMALKFENLKPISIYSDSSGTLSLAANTMFSSRTKHIALRFFVLQESIKPRHIAVHHVPTQAMLADIATK 840          
BLAST of mRNA_F-serratus_M_contig1000.119.1 vs. uniprot
Match: A0A6H5JN55_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN55_9PHAE)

HSP 1 Score: 194 bits (494), Expect = 7.840e-52
Identity = 126/349 (36.10%), Postives = 185/349 (53.01%), Query Frame = 3
Query:  132 GFF-DCILNGEISEGVYTRQAPGFETKD-SQGRSLIMQLSRSIYGLRQSPKACSVTTDKDLSTICFLPTVSDACVHVKGSGDSYVILTSYVDNLFITGPNDNAMAEVRKVFMEKFTMTDFKDATRILGIEIFQDKERSTISITQALYYQSIMGSLIFLCQCTRFDICIAVSQEARFMSKPTPVHMGAVKRILRYLRDKPNLHITYSRNSNFELIGFCDALNGTGNPEMARSTSGSMYFLSEGIVHFSTSVQKIAVQSTTEAELIARSSCAKQEIYLCGILGGLGWRTFRSARIFCDNKGALLLAGQGSYSSRSKHLAIRFMGLRDWIIDETLVIDHVSNKGQLSDILTK 1172
            GF  +  LN      VY R APG E +D + G  ++ +L RS+YGL QS    +   +  L    +  T SD CV++  SGD   IL  YVD++  TG N+     V          T+ +   ++LG E   DK+R          +Q+I GSL++L QCTR+D+  AV Q  R  + P  VHM A K +LRYLR  P+L I Y +   F L  F D+  G  NP+  RS +G ++ L  G++ +    Q +A Q+T EAEL A S  A++ +Y+   +  +G++TFRS  I  D+ GAL +A    +SSR+KH+A+RF  L +      + + H  +   L+DI TK
Sbjct:  462 GFLGETFLNAYADRDVYVRPAPGDEERDPTTGEMMVYKLERSLYGLTQS--LWNDAINDRLIIFGWQRTHSDPCVYIFVSGDELTILAIYVDDILSTGGNNEIANPVSTPGYGAELSTE-QPQDQLLGTE---DKQR----------FQAITGSLLYLAQCTRYDLSYAVHQLTRACANPAQVHMAAAKHLLRYLRGTPDLPIVYKKGQ-FRLSCFTDSSFGA-NPDNRRSPTGYLFSLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFKTFRSVPINSDSTGALTVASNAMFSSRTKHIALRFFFLGELTKRHRITLHHQPSATMLADIATK 792          
BLAST of mRNA_F-serratus_M_contig1000.119.1 vs. uniprot
Match: A0A438DM57_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Vitis vinifera TaxID=29760 RepID=A0A438DM57_VITVI)

HSP 1 Score: 185 bits (469), Expect = 6.840e-51
Identity = 110/389 (28.28%), Postives = 192/389 (49.36%), Query Frame = 3
Query:  147 ILNGEISEGVYTRQAPGFETKDSQGRSLIMQLSRSIYGLRQSPKACSVTTDKDLSTICFLPTVSDACVHVKGSGDSYVILTSYVDNLFITGPNDNAMAEVRKVFMEKFTMTDFKDATRILGIEIFQDKERSTISITQALY---------------------------------------------YQSIMGSLIFLCQCTRFDICIAVSQEARFMSKPTPVHMGAVKRILRYLRDKPNLHITYSRNSNFELIGFCDALNGTGNPEMARSTSGSMYFLSEGIVHFSTSVQKIAVQSTTEAELIARSSCAKQEIYLCGILGGLGWRTF--RSARIFCDNKGALLLAGQGSYSSRSKHLAIRFMGLRDWIIDETLVIDHVSNKGQLSDILTK 1172
             LNGE+ E VY +Q  GF + D  G  L+ +L +SIY L+Q+ +   +     +S+  F+  V D C+++K SG     L  YVD++ +   +   + EV++   + F M D  +A+ ++GI+I +D+ +  + ++Q  Y                                             Y S +GSL++   CTR DI  AV    R+ S P   H  A K+++RYL+   +  + Y R SN E++G+ D+ +  G  +  +STSG ++ L+ G + + +  Q +A  ST E+E I+        ++L   + GL       R   I+CDN  A+ +A      SRSKH+ I+++ +R+ + ++ +VI+H+S +  ++D LTK
Sbjct:    7 FLNGELEEEVYMKQPEGFPSSD--GEQLVCKLKKSIYDLKQASRQWYLKFHNIISSFGFVDNVMDQCIYLKVSGSKVCFLVLYVDDILLATNDKGLLHEVKQFLSKNFDMKDMGEASYVIGIKIHRDRFKGILGLSQETYINKVLERFRMKNCSPSVSPIVKGDRFNLNQCPKNDLEREQTKNIPYASAVGSLMYAQVCTRPDIAFAVGMLGRYQSNPGIDHWKAAKKVMRYLQGTKDYKLMYRRTSNLEVVGYSDS-DFAGCVDSRKSTSGYIFILASGAISWRSVKQTMAATSTMESEFISCFEATSHGVWLKSFISGLRVMDSISRPLSIYCDNSAAVFMAKNNKSGSRSKHIDIKYLAIRERVKEKKVVIEHISTELMIADPLTK 392          
BLAST of mRNA_F-serratus_M_contig1000.119.1 vs. uniprot
Match: A0A438IQ82_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438IQ82_VITVI)

HSP 1 Score: 192 bits (489), Expect = 1.480e-50
Identity = 110/402 (27.36%), Postives = 203/402 (50.50%), Query Frame = 3
Query:   60 GLAYRRSTAPTRHRCS*RMERGRYGFFD----------CILNGEISEGVYTRQAPGFETKDSQGRSLIMQLSRSIYGLRQSPKACSVTTDKDLSTICFLPTVSDACVHVKGSGDSYVILTSYVDNLFITGPNDNAMAEVRKVFMEKFTMTDFKDATRILGIEIFQDKERSTISITQALYYQSIM-------------------GSLIFLCQCTRFDICIAVSQEARFMSKPTPVHMGAVKRILRYLRDKPNLHITYSRNSNFELIGFCDALNGTGNPEMARSTSGSMYFLSEGIVHFSTSVQKIAVQSTTEAELIARSSCAKQEIYLCGILGGLGW--RTFRSARIFCDNKGALLLAGQGSYSSRSKHLAIRFMGLRDWIIDETLVIDHVSNKGQLSDILTK 1172
            G+ Y+ + +P   + S R+       FD            LNG + E +Y  Q  GF  K ++   L+ +L +SIYGL+Q+ +   +  +  +++  F   + D C+++K SG  ++ L  YVD++ +   +   + E ++   + F M D  +A  ++GIEIF+D+ R  + ++Q  Y   ++                   GSL++   CTR DI  AV    R+ S P   H  A K+++RYL+   +  +TY R+   E++G+ D+  G G  +  +STSG ++ L+ G + + +  Q I   ST EAE +A    +   ++L   + GLG      +  RI+CDN  A+  +  G +SS SKH+ ++++ +++ +  + + I+++     ++D LTK
Sbjct:  765 GIDYKDTFSPVSKKDSLRIIMALVAHFDLELHQMDVKTAFLNGNLDEDIYMEQPEGFAKKGNE--HLVCKLKKSIYGLKQASRQWYIKFNNTITSFGFKENIVDQCIYLKVSGSKFIFLILYVDDILLASSDLGLLRETKEYLSKNFHMVDMGEANYVIGIEIFRDRSRGVLGLSQKGYIDRVLERFNMQSCSSGIAPILKAVGSLMYAQTCTRPDISFAVGMLGRYQSDPGFEHWKAAKKVMRYLQGTKDYMLTYKRSEQLEVVGYSDSDYG-GCLDSLKSTSGFVFMLANGAISWKSEKQSITASSTMEAEFVACFEASSHALWLRNFISGLGVVDSIAKPLRIYCDNTAAVFFSKNGKFSSGSKHMDLKYLVVKERVQKQQVSIENIRTTLMVADPLTK 1163          
BLAST of mRNA_F-serratus_M_contig1000.119.1 vs. uniprot
Match: A0A2N9FMI2_FAGSY (Integrase catalytic domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9FMI2_FAGSY)

HSP 1 Score: 192 bits (489), Expect = 1.690e-50
Identity = 119/388 (30.67%), Postives = 209/388 (53.87%), Query Frame = 3
Query:  147 ILNGEISEGVYTRQAPGFETKDSQGRSLIMQLSRSIYGLRQSPKACSVTTDKDLSTICFLPTVSDACVHVKGSGD-SYVILTSYVDNLFITGPNDNAMAEVRKVFMEKFTMTDFKDATRILGIEIFQDKERSTISITQALY---------------------------------------------YQSIMGSLIFLCQCTRFDICIAVSQEARFMSKPTPVHMGAVKRILRYLRDKPNLHITYSRNSNFELIGFCDALNGTGNPEMARSTSGSMYFLSEGIVHFSTSVQKIAVQSTTEAELIARSSCAKQEIYLCGILGGLGWRTFRSARIFCDNKGALLLAGQGSYSSRSKHLAIRFMGLRDWIIDETLVIDHVSNKGQLSDILTK 1172
             L+GE+ E +Y  Q  GFE K  +  +L+ +L++S+YGL+Q+P+      D  + ++ +    SD CV+ K  GD +++IL  YVD++ + GPN + + +++     +F M D   A +ILG++I++D+    I ++Q  Y                                             Y S +GSL+F   CTR DI  AV   +R+M+ P   H  AVKRILRY++   N+ + Y   S+F + G+ D+ +  G+ + ++STSG ++ L+ G V + + +Q I   STTEAE +A +  +K+ I+L  +L  LG +  + A +FCD++ AL LA   ++ S++KH+ +++  +R+ + + ++ I  +  K  L+D+LTK
Sbjct:   18 FLHGELEEEIYMLQPEGFEEKGKE--NLVCKLNKSLYGLKQAPRCWYKRFDSFIMSLGYNRHSSDPCVYYKRFGDGNFIILLLYVDDMLVAGPNKDRITDLKAQLAREFEMKDLGPANKILGMQIYRDRNNRKIWLSQKNYLKKILRRFNMQDCKPIPTPLPINFKLSSSMSPSNEAERMEMSRVPYASAVGSLMFAMVCTRPDIAQAVGVVSRYMANPGKEHWNAVKRILRYVKGTSNVALCYG-GSDFTVRGYVDS-DYAGDLDKSKSTSGYVFTLAGGAVSWVSKLQSIVATSTTEAEYVAATQASKEAIWLQMLLEELGHKQEKIA-LFCDSQSALHLAKNPAFHSKTKHIRVQYHFVREKVEEGSVDIQKIHTKDNLADMLTK 400          
BLAST of mRNA_F-serratus_M_contig1000.119.1 vs. uniprot
Match: A0A2N9IUS6_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9IUS6_FAGSY)

HSP 1 Score: 191 bits (486), Expect = 4.460e-50
Identity = 119/388 (30.67%), Postives = 208/388 (53.61%), Query Frame = 3
Query:  147 ILNGEISEGVYTRQAPGFETKDSQGRSLIMQLSRSIYGLRQSPKACSVTTDKDLSTICFLPTVSDACVHVKGSGD-SYVILTSYVDNLFITGPNDNAMAEVRKVFMEKFTMTDFKDATRILGIEIFQDKERSTISITQALY---------------------------------------------YQSIMGSLIFLCQCTRFDICIAVSQEARFMSKPTPVHMGAVKRILRYLRDKPNLHITYSRNSNFELIGFCDALNGTGNPEMARSTSGSMYFLSEGIVHFSTSVQKIAVQSTTEAELIARSSCAKQEIYLCGILGGLGWRTFRSARIFCDNKGALLLAGQGSYSSRSKHLAIRFMGLRDWIIDETLVIDHVSNKGQLSDILTK 1172
             L+GE+ E +Y  Q  GFE K  +  +L+ +L++S+YGL+Q+P+      D  + ++ +    SD CV+ K  GD +++IL  YVD++ + GPN + + +++     +F M D   A +ILG++I++D+    I ++Q  Y                                             Y S +GSL+F   CTR DI  AV   +R+M  P   H  AVKRILRY++   N+ + Y   S+F + G+ D+ +  G+ + ++STSG ++ L+ G V + + +Q I   STTEAE +A +  +K+ I+L  +L  LG +  + A +FCD++ AL LA   ++ S++KH+ +++  +R+ + + ++ I  +  K  L+D+LTK
Sbjct: 1994 FLHGELEEEIYMLQPEGFEEKGKE--NLVCKLNKSLYGLKQAPRCWYKRFDSFIMSLGYNRHSSDPCVYYKRFGDGNFIILLLYVDDMLVAGPNKDRITDLKAQLAREFEMKDLGPANKILGMQIYRDRNNRKIWLSQKNYLKKILRRFNMQDCKPIPTPLPINFKLSSSMSPSNEAERMEMSRVPYASAVGSLMFAMVCTRPDIAQAVGVVSRYMVNPGKEHWSAVKRILRYVKGTSNVALCYG-GSDFTVRGYVDS-DYAGDLDKSKSTSGYVFTLAGGAVSWVSKLQSIVATSTTEAEYVAATQASKEAIWLQMLLEELGHKQEKIA-LFCDSQSALHLAKNPAFHSKTKHIRVQYHFVREKVEEGSVDIQKIHTKDNLADMLTK 2376          
BLAST of mRNA_F-serratus_M_contig1000.119.1 vs. uniprot
Match: A0A2K3M6H2_TRIPR (Putative LRR receptor-like protein kinase (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3M6H2_TRIPR)

HSP 1 Score: 184 bits (466), Expect = 6.190e-50
Identity = 111/343 (32.36%), Postives = 188/343 (54.81%), Query Frame = 3
Query:  147 ILNGEISEGVYTRQAPGFETKDSQGRSLIMQLSRSIYGLRQSPKACSVTTDKDLSTICFLPTVSDACVHVKGSGDSYVILTS-YVDNLFITGPNDNAMAEVRKVFMEKFTMTDFKDATRILGIEIFQDKERSTISITQALYYQSIMGSLIFLCQCTRFDICIAVSQEARFMSKPTPVHMGAVKRILRYLRDKPNLHITYSRNSNFELIGFCDALNGTGNPEMARSTSGSMYFLSEGIVHFSTSVQKIAVQSTTEAELIARSSCAKQEIYLCGILGGLGWRTFRSARIFCDNKGALLLAGQGSYSSRSKHLAIRFMGLRDWIIDETLVIDHVSNKGQLSDILTK 1172
             LNG + E +Y  Q  GF  K ++ +  +++L +++YGL+Q+P+A     D+      F  + S+  +++K  G    ++ S YVD+L  TG N   +   ++  M+ F MTD       LGIE+ +D        ++   Y+S++GSL++L   TR DI  A S  +RFM KP+ +H GA KRILRYL+      + Y    N +L+G+ D+ +  G+ +  +STSG  + L  G   +++  Q    QST EAE +A +    Q I+L  ILG +G +      I+CDNK A+ +A    +  R+KH+AI++  +R+    + + +++ + + Q++DI TK
Sbjct:  125 FLNGILEEEIYVEQPQGFVVKGNEDK--VLRLRKALYGLKQAPRAWYSRIDQYFMDRGFRRSKSEPTLYIKTQGQYDTLIVSLYVDDLIYTGNNITLINGFKEDMMKTFEMTDLGLMNYFLGIEMQKDDGSPEADASR---YRSLIGSLLYL-TATRPDIMYATSLLSRFMQKPSQIHFGAGKRILRYLQGTKEYGMWYKSIGNSKLLGYTDS-DWAGSLDDMKSTSGYAFSLGSGFFSWASKKQATVAQSTAEAEYVAAAEATSQSIWLRRILGDMGEQVDEPTIIYCDNKSAIAMANNPVHHHRTKHIAIKYHFIREANTTKQIQLEYCTTEEQIADIFTK 460          
BLAST of mRNA_F-serratus_M_contig1000.119.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE)

HSP 1 Score: 190 bits (483), Expect = 7.510e-50
Identity = 119/368 (32.34%), Postives = 192/368 (52.17%), Query Frame = 3
Query:  198 FETKDSQGRSLIMQLSRSIYGLRQSPKACSVTTDKDLSTICFLPTVSDACVHVKGSGDSYVILTSYVDNLFITGPNDNAMAEVRKVFMEKFTMTDFKDATRILGIEIFQDKERSTISITQALY------------------------------------------YQSIMGSLIFLCQCTRFDICIAVSQEARFMSKPTPVHMGAVKRILRYLRDKPNLHITYSRNSNFELIGFCDALNGTGNPEMARSTSGSMYFLSEGIVHFSTSVQKIAVQSTTEAELIARSSCAKQEIYLCGILGGLGW-RTFRSARIFCDNKGALLLAGQGSYSSRSKHLAIRFMGLRDWIIDETLVIDHVSNKGQLSDILTK 1172
            F+  D  G  ++M+L++S+YGL QSP     T D  L  I F+   SD CV++     + + LT YVD+L + G + +A++ V+    ++F MTD  +A+ +L +EI +D+E +T++I+Q  Y                                          YQ I+GSL+++ Q  R+DI  A  Q AR M+KP+ VHM A K  LRYL    +  ITY +   F+L  F D+ N   NP+  +STS  +  L+   + F + +Q +   ST EAEL+A +   K+ ++   ++  LG+ + F    ++CDN   L   G  S+SSR+KH+A+RF  +R+ + +  + I +V  +  L+DI TK
Sbjct:  614 FDQMDDGG-DMVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLRMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGG-FKLATFSDS-NWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVRTEDNLADIGTK 978          
BLAST of mRNA_F-serratus_M_contig1000.119.1 vs. uniprot
Match: A0A2N9J7I7_FAGSY (Integrase catalytic domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9J7I7_FAGSY)

HSP 1 Score: 190 bits (482), Expect = 9.730e-50
Identity = 117/401 (29.18%), Postives = 205/401 (51.12%), Query Frame = 3
Query:   60 GLAYRRSTAPTRHRCS*RMERGRYGFFD----------CILNGEISEGVYTRQAPGFETKDSQGRSLIMQLSRSIYGLRQSPKACSVTTDKDLSTICFLPTVSDACVHVKGSGDSYVILTSYVDNLFITGPNDNAMAEVRKVFMEKFTMTDFKDATRILGIEIFQDKERSTI------SITQA------------LYYQSIMGSLIFLCQCTRFDICIAVSQEARFMSKPTPVHMGAVKRILRYLRDKPNLHITYSRNSNFELIGFCDALNGTGNPEMARSTSGSMYFLSEGIVHFSTSVQKIAVQSTTEAELIARSSCAKQEIYLCGILGGLGWRTF--RSARIFCDNKGALLLAGQGSYSSRSKHLAIRFMGLRDWIIDETLVIDHVSNKGQLSDILTK 1172
            G+ Y  + +P   + S R+       FD            LNG++ E VY +Q  GF + D  G  L+ +L +SIYGL+Q+ +   +     +S+  F+  + D C++ K SG     L  YVD++ +   +   + EV++   + F M D  +A+ ++GI+I +D+ ++ I      ++ Q             + Y S +GSL++   CTR DI  AV    R+ S P   H  A K+++RYL+   +  + Y R  N E+IG+ D+ +  G  +  +STSG ++ ++ G V + ++ Q +   ST EAE ++        ++L   + GL       R  R++CDN  A+ +A      SRSKH+ I+++ +R+ I ++ +VI+HVS +  ++D LTK
Sbjct:  571 GIDYTETFSPVSKKDSLRVILALVAHFDLELQQMDVKTAFLNGDLEEEVYMKQPEGFLSSD--GEQLVCKLKKSIYGLKQASRQWYLKFHNVISSFGFVENIMDQCIYQKVSGSKICFLVLYVDDILLATNDKGLLHEVKQFLSKNFDMKDMGEASYVIGIKIHRDRFQAPIVKGDRFNLNQCPKNDLEREQMKNIPYASAVGSLMYAQVCTRPDIAFAVGMLGRYQSDPGLDHWRAAKKVMRYLQGTKDYMLMYRRTDNLEVIGYSDS-DFAGCIDSRKSTSGYIFLMASGAVSWRSAKQTLTATSTMEAEFVSCFEATSHGVWLKSFISGLRIMDSISRPLRMYCDNSAAVFMAKNNKSGSRSKHIDIKYLAIRERIKEKKVVIEHVSTELMIADPLTK 968          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1000.119.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JME8_9PHAE2.530e-5532.16Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K9R3_9PHAE3.580e-5233.69Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JN55_9PHAE7.840e-5236.10Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A438DM57_VITVI6.840e-5128.28Retrovirus-related Pol polyprotein from transposon... [more]
A0A438IQ82_VITVI1.480e-5027.36Retrovirus-related Pol polyprotein from transposon... [more]
A0A2N9FMI2_FAGSY1.690e-5030.67Integrase catalytic domain-containing protein n=1 ... [more]
A0A2N9IUS6_FAGSY4.460e-5030.67Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A2K3M6H2_TRIPR6.190e-5032.36Putative LRR receptor-like protein kinase (Fragmen... [more]
A0A6H5KNH5_9PHAE7.510e-5032.34Integrase catalytic domain-containing protein n=1 ... [more]
A0A2N9J7I7_FAGSY9.730e-5029.18Integrase catalytic domain-containing protein n=1 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1000contigF-serratus_M_contig1000:90613..91910 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score195.3
Seed ortholog evalue4.9e-47
Seed eggNOG ortholog15368.BRADI1G43020.1
KEGG koko:K20093
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs37THH@33090,3GG2K@35493,3IKX9@38820,3M2IR@4447,COG2801@1,KOG0017@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Exons2
Model size1172
Cds size1059
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1000.119.1prot_F-serratus_M_contig1000.119.1Fucus serratus malepolypeptideF-serratus_M_contig1000 90726..91910 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928791.2597022-UTR-F-serratus_M_contig1000:90612..907251622928791.2597022-UTR-F-serratus_M_contig1000:90612..90725Fucus serratus maleUTRF-serratus_M_contig1000 90613..90725 +
1690962573.4493558-UTR-F-serratus_M_contig1000:90612..907251690962573.4493558-UTR-F-serratus_M_contig1000:90612..90725Fucus serratus maleUTRF-serratus_M_contig1000 90613..90725 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928791.2723699-CDS-F-serratus_M_contig1000:90725..911781622928791.2723699-CDS-F-serratus_M_contig1000:90725..91178Fucus serratus maleCDSF-serratus_M_contig1000 90726..91178 +
1690962573.4594686-CDS-F-serratus_M_contig1000:90725..911781690962573.4594686-CDS-F-serratus_M_contig1000:90725..91178Fucus serratus maleCDSF-serratus_M_contig1000 90726..91178 +
1622928791.2846794-CDS-F-serratus_M_contig1000:91304..919101622928791.2846794-CDS-F-serratus_M_contig1000:91304..91910Fucus serratus maleCDSF-serratus_M_contig1000 91305..91910 +
1690962573.4688044-CDS-F-serratus_M_contig1000:91304..919101690962573.4688044-CDS-F-serratus_M_contig1000:91304..91910Fucus serratus maleCDSF-serratus_M_contig1000 91305..91910 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1000.119.1

>prot_F-serratus_M_contig1000.119.1 ID=prot_F-serratus_M_contig1000.119.1|Name=mRNA_F-serratus_M_contig1000.119.1|organism=Fucus serratus male|type=polypeptide|length=353bp
MERGRYGFFDCILNGEISEGVYTRQAPGFETKDSQGRSLIMQLSRSIYGL
RQSPKACSVTTDKDLSTICFLPTVSDACVHVKGSGDSYVILTSYVDNLFI
TGPNDNAMAEVRKVFMEKFTMTDFKDATRILGIEIFQDKERSTISITQAL
YYQSIMGSLIFLCQCTRFDICIAVSQEARFMSKPTPVHMGAVKRILRYLR
DKPNLHITYSRNSNFELIGFCDALNGTGNPEMARSTSGSMYFLSEGIVHF
STSVQKIAVQSTTEAELIARSSCAKQEIYLCGILGGLGWRTFRSARIFCD
NKGALLLAGQGSYSSRSKHLAIRFMGLRDWIIDETLVIDHVSNKGQLSDI
LTK
back to top

mRNA from alignment at F-serratus_M_contig1000:90613..91910+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1000.119.1 ID=mRNA_F-serratus_M_contig1000.119.1|Name=mRNA_F-serratus_M_contig1000.119.1|organism=Fucus serratus male|type=mRNA|length=1298bp|location=Sequence derived from alignment at F-serratus_M_contig1000:90613..91910+ (Fucus serratus male)
GTCGTCGCAAAGGGGCGGAGTCAGCGGCACGGCGTCGACTGTGGGAGAAC CTTAGTGCCGGTCTGGCGTATCGAAGGTCAACGGCTCCTACTCGCCATCG CTGCAGCTAACGTATGGAGCGTGGCCGCTATGGATTTTTCGACTGCATTC TCAACGGGGAGATTTCCGAAGGAGTCTACACCCGGCAAGCCCCGGGGTTT GAGACCAAGGACTCTCAGGGGCGATCGCTCATTATGCAACTCTCCAGATC GATTTACGGACTACGGCAGTCGCCAAAAGCGTGTAGCGTCACCACCGACA AAGACCTATCAACCATCTGTTTCCTGCCGACGGTTAGCGATGCGTGTGTG CACGTCAAGGGCAGCGGGGACAGCTACGTGATACTCACGTCGTACGTGGA CAATCTGTTTATCACCGGACCCAACGACAACGCCATGGCCGAAGTGCGTA AGGTGTTCATGGAAAAGTTCACCATGACGGACTTTAAGGACGCAACTCGA ATCTTGGGGATCGAAATCTTCCAGGACAAGGAGCGCAGCACCATCAGCAT CACTCAGGCTCTTTACGTTTTATCGATACTGCATAAGTAAGGCATGGCCG ACTGAAATCTCGTGCGCACACCTGGTATTGGCAATGAGTTGACCGCGGAA CCTGAAGGCAGCGTTCCGCTCAAGAAGGAGGACACCATCGAGTACCAGAG CATCATGGGATCCCTCATCTTTTTGTGCCAGTGTACGCGTTTTGACATAT GTATTGCGGTGTCACAGGAGGCACGATTCATGAGCAAGCCAACACCCGTC CACATGGGGGCCGTCAAGCGCATCTTGCGCTATCTCCGCGACAAGCCCAA TCTCCATATTACCTACAGTCGCAACAGCAATTTCGAGCTCATTGGCTTCT GTGACGCTTTAAACGGCACCGGCAATCCGGAGATGGCAAGGTCTACATCA GGGAGCATGTACTTTCTTTCTGAGGGAATCGTCCACTTTAGCACAAGCGT TCAAAAGATAGCGGTGCAGTCCACAACCGAGGCGGAGCTCATCGCCAGGA GCTCCTGCGCAAAGCAAGAGATTTACTTGTGCGGAATCCTTGGAGGGCTA GGATGGAGAACCTTCCGCAGTGCCCGCATCTTCTGCGATAACAAGGGGGC TTTGCTCCTAGCGGGGCAGGGAAGCTACAGCAGCCGAAGCAAACATCTTG CGATCAGGTTCATGGGGCTGCGCGACTGGATCATCGACGAGACGCTCGTC ATCGACCACGTCTCCAATAAGGGTCAGCTAAGCGACATTCTCACCAAG
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig1000:90613..91910+

>mRNA_F-serratus_M_contig1000.119.1 ID=mRNA_F-serratus_M_contig1000.119.1|Name=mRNA_F-serratus_M_contig1000.119.1|organism=Fucus serratus male|type=CDS|length=2118bp|location=Sequence derived from alignment at F-serratus_M_contig1000:90613..91910+ (Fucus serratus male)
ATGGAGCGTGGCCGCTATGGATTTTTCGACTGCATTCTCAACGGGGAGAT
TTCCGAAGGAGTCTACACCCGGCAAGCCCCGGGGTTTGAGACCAAGGACT
CTCAGGGGCGATCGCTCATTATGCAACTCTCCAGATCGATTTACGGACTA
CGGCAGTCGCCAAAAGCGTGTAGCGTCACCACCGACAAAGACCTATCAAC
CATCTGTTTCCTGCCGACGGTTAGCGATGCGTGTGTGCACGTCAAGGGCA
GCGGGGACAGCTACGTGATACTCACGTCGTACGTGGACAATCTGTTTATC
ACCGGACCCAACGACAACGCCATGGCCGAAGTGCGTAAGGTGTTCATGGA
AAAGTTCACCATGACGGACTTTAAGGACGCAACTCGAATCTTGGGGATCG
AAATCTTCCAGGACAAGGAGCGCAGCACCATCAGCATCACTCAGGCTCTT
TACATGGAGCGTGGCCGCTATGGATTTTTCGACTGCATTCTCAACGGGGA
GATTTCCGAAGGAGTCTACACCCGGCAAGCCCCGGGGTTTGAGACCAAGG
ACTCTCAGGGGCGATCGCTCATTATGCAACTCTCCAGATCGATTTACGGA
CTACGGCAGTCGCCAAAAGCGTGTAGCGTCACCACCGACAAAGACCTATC
AACCATCTGTTTCCTGCCGACGGTTAGCGATGCGTGTGTGCACGTCAAGG
GCAGCGGGGACAGCTACGTGATACTCACGTCGTACGTGGACAATCTGTTT
ATCACCGGACCCAACGACAACGCCATGGCCGAAGTGCGTAAGGTGTTCAT
GGAAAAGTTCACCATGACGGACTTTAAGGACGCAACTCGAATCTTGGGGA
TCGAAATCTTCCAGGACAAGGAGCGCAGCACCATCAGCATCACTCAGGCT
CTTTACTACCAGAGCATCATGGGATCCCTCATCTTTTTGTGCCAGTGTAC
GCGTTTTGACATATGTATTGCGGTGTCACAGGAGGCACGATTCATGAGCA
AGCCAACACCCGTCCACATGGGGGCCGTCAAGCGCATCTTGCGCTATCTC
CGCGACAAGCCCAATCTCCATATTACCTACAGTCGCAACAGCAATTTCGA
GCTCATTGGCTTCTGTGACGCTTTAAACGGCACCGGCAATCCGGAGATGG
CAAGGTCTACATCAGGGAGCATGTACTTTCTTTCTGAGGGAATCGTCCAC
TTTAGCACAAGCGTTCAAAAGATAGCGGTGCAGTCCACAACCGAGGCGGA
GCTCATCGCCAGGAGCTCCTGCGCAAAGCAAGAGATTTACTTGTGCGGAA
TCCTTGGAGGGCTAGGATGGAGAACCTTCCGCAGTGCCCGCATCTTCTGC
GATAACAAGGGGGCTTTGCTCCTAGCGGGGCAGGGAAGCTACAGCAGCCG
AAGCAAACATCTTGCGATCAGGTTCATGGGGCTGCGCGACTGGATCATCG
ACGAGACGCTCGTCATCGACCACGTCTCCAATAAGGGTCAGCTAAGCGAC
ATTCTCACCAAGTACCAGAGCATCATGGGATCCCTCATCTTTTTGTGCCA
GTGTACGCGTTTTGACATATGTATTGCGGTGTCACAGGAGGCACGATTCA
TGAGCAAGCCAACACCCGTCCACATGGGGGCCGTCAAGCGCATCTTGCGC
TATCTCCGCGACAAGCCCAATCTCCATATTACCTACAGTCGCAACAGCAA
TTTCGAGCTCATTGGCTTCTGTGACGCTTTAAACGGCACCGGCAATCCGG
AGATGGCAAGGTCTACATCAGGGAGCATGTACTTTCTTTCTGAGGGAATC
GTCCACTTTAGCACAAGCGTTCAAAAGATAGCGGTGCAGTCCACAACCGA
GGCGGAGCTCATCGCCAGGAGCTCCTGCGCAAAGCAAGAGATTTACTTGT
GCGGAATCCTTGGAGGGCTAGGATGGAGAACCTTCCGCAGTGCCCGCATC
TTCTGCGATAACAAGGGGGCTTTGCTCCTAGCGGGGCAGGGAAGCTACAG
CAGCCGAAGCAAACATCTTGCGATCAGGTTCATGGGGCTGCGCGACTGGA
TCATCGACGAGACGCTCGTCATCGACCACGTCTCCAATAAGGGTCAGCTA
AGCGACATTCTCACCAAG
back to top