mRNA_F-serratus_M_contig1000.118.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1000.118.1
Unique NamemRNA_F-serratus_M_contig1000.118.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1000.118.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1000contigF-serratus_M_contig1000:72351..72853 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size158
Cds size156
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928791.1961765-CDS-F-serratus_M_contig1000:72351..724281622928791.1961765-CDS-F-serratus_M_contig1000:72351..72428Fucus serratus maleCDSF-serratus_M_contig1000 72352..72428 -
1690962573.416614-CDS-F-serratus_M_contig1000:72351..724281690962573.416614-CDS-F-serratus_M_contig1000:72351..72428Fucus serratus maleCDSF-serratus_M_contig1000 72352..72428 -
1622928791.2155316-CDS-F-serratus_M_contig1000:72774..728531622928791.2155316-CDS-F-serratus_M_contig1000:72774..72853Fucus serratus maleCDSF-serratus_M_contig1000 72775..72853 -
1690962573.4384816-CDS-F-serratus_M_contig1000:72774..728531690962573.4384816-CDS-F-serratus_M_contig1000:72774..72853Fucus serratus maleCDSF-serratus_M_contig1000 72775..72853 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1000.118.1prot_F-serratus_M_contig1000.118.1Fucus serratus malepolypeptideF-serratus_M_contig1000 72352..72853 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1000.118.1

>prot_F-serratus_M_contig1000.118.1 ID=prot_F-serratus_M_contig1000.118.1|Name=mRNA_F-serratus_M_contig1000.118.1|organism=Fucus serratus male|type=polypeptide|length=52bp
YGRVGEGRRNCVRPAAEEERSGRGGQDHVPDWQPRKLLGMVEARSVNVKK
TT
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mRNA from alignment at F-serratus_M_contig1000:72351..72853-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1000.118.1 ID=mRNA_F-serratus_M_contig1000.118.1|Name=mRNA_F-serratus_M_contig1000.118.1|organism=Fucus serratus male|type=mRNA|length=503bp|location=Sequence derived from alignment at F-serratus_M_contig1000:72351..72853- (Fucus serratus male)
TATGGCCGCGTGGGTGAGGGAAGAAGAAATTGCGTCCGACCAGCGGCAGA
AGAAGAGAGAAGCGGAAGAGGCGGACAAGGTTGAGGTTGCACCTGGGGTG
ACTGTAGCAAGCTTGAGACGTTTTCGAACCGCGTTGATTGGACCAACCCA
TGGACTCCCTAAGCGACGTCGATTGTGCCGTTAGTGAAAACTGAAACCCC
AAGAGTACGGAATGCGGTAGATGCTACGCGTTTGGGTGCATGGTTGCGAT
CCGGGAGGGTATAGGATGACTCGCGGCTGACTCTTTGCCAAACTCTCTCT
CTCGAATGTCCCTCTTCTATCTTTTTTTTTCTGGCATGTGTATTTTGTTA
TCCTTGTTCCTTTCTCTTTGTCGTTTTTGTGTGTGTGTTTGATAGATGTT
CCTCTGACCTCTTTCTGTCCAGCAGACCACGTACCGGATTGGCAACCACG
TAAATTACTGGGTATGGTTGAGGCCCGATCGGTTAATGTGAAGAAAACAA
CAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1000:72351..72853-

>mRNA_F-serratus_M_contig1000.118.1 ID=mRNA_F-serratus_M_contig1000.118.1|Name=mRNA_F-serratus_M_contig1000.118.1|organism=Fucus serratus male|type=CDS|length=312bp|location=Sequence derived from alignment at F-serratus_M_contig1000:72351..72853- (Fucus serratus male)
TATGGCCGCGTGGGTGAGGGAAGAAGAAATTGCGTCCGACCAGCGGCAGA
AGAAGAGAGAAGCGGAAGAGGCGGACAAGTATGGCCGCGTGGGTGAGGGA
AGAAGAAATTGCGTCCGACCAGCGGCAGAAGAAGAGAGAAGCGGAAGAGG
CGGACAAGACCACGTACCGGATTGGCAACCACGTAAATTACTGGGTATGG
TTGAGGCCCGATCGGTTAATGTGAAGAAAACAACAACCACGTACCGGATT
GGCAACCACGTAAATTACTGGGTATGGTTGAGGCCCGATCGGTTAATGTG
AAGAAAACAACA
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