mRNA_F-serratus_M_contig100.116.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig100.116.1 vs. uniprot
Match: A0A139GFD3_MICA8 (Hist_deacetyl domain-containing protein n=78 Tax=Chroococcales TaxID=1118 RepID=A0A139GFD3_MICA8) HSP 1 Score: 231 bits (588), Expect = 2.640e-66 Identity = 131/311 (42.12%), Postives = 185/311 (59.49%), Query Frame = 1
Query: 265 VTVIYDDFMLKHRPPPGYPHPECPARVSTAKAELDGVEG---VCWKVPSSLESEEAKAATLTAIERVHRKEYLDEIKRICARGGGGVDFDTYVCPESFEVCVAASSAWMDAAESAALRGRPAFALARPPGHHATSGVAMGFCLVCFAAVAAFHALETLGCRRVAILDFDVHHGNGVAAIVKGDDRIRYSSIHQGGIFPGTGGAEDTGPLGNLKHLPFFGVGERWETYEARFE-EALEWLREFEPDLLIVSAGYDALEADELATASLQPEDYARMGSRLREVFGNRVAFGLEGGYNLQETPKAIRMTLEPFL 1185
+++IY D L H G HPE AR++ L E + W +P+ LE + L I++VH ++Y+D ++RIC +GGG +D DT V S++V + A S W+D + G PAF LARPPGHHATS MGFCL AA+AA++ALE ++VAILD+DVHHGNG IV+ +I Y S+HQ +PGTG A + G N+ ++P G + Y+ FE + + +L+ F+PDL+IVSAGYDA +AD LA L P+DY + L + + FGLEGGY+L+ ++ TLE L
Sbjct: 2 ISIIYSDEFLDHDT--GIYHPEKAARLTAIVEALKQTEWQSKLTWHLPTPLE---IRDEVLPLIKQVHNQDYVDILRRICQQGGGRLDADTPVSARSYDVALLAVSGWLDGVDRVLSTGDPAFILARPPGHHATSNYGMGFCLFSNAAIAAYYALENKRVQKVAILDWDVHHGNGTQDIVENHPQIAYCSLHQFPFYPGTGEAREKGEFNNVLNIPLL-AGSTIKDYQEHFEGQVIPFLKNFQPDLVIVSAGYDANQADPLAGICLHPQDYGILTKYLLTL-KKPLLFGLEGGYDLETLAASVVATLEALL 305
BLAST of mRNA_F-serratus_M_contig100.116.1 vs. uniprot
Match: UPI001CC94A3A (histone deacetylase n=1 Tax=Kovacikia minuta TaxID=2931930 RepID=UPI001CC94A3A) HSP 1 Score: 231 bits (588), Expect = 2.640e-66 Identity = 128/311 (41.16%), Postives = 185/311 (59.49%), Query Frame = 1
Query: 265 VTVIYDDFMLKHRPPPGYPHPECPARVSTAKAELDGV---EGVCWKVPSSLESEEAKAATLTAIERVHRKEYLDEIKRICARGGGGVDFDTYVCPESFEVCVAASSAWMDAAESAALRGRPAFALARPPGHHATSGVAMGFCLVCFAAVAAFHALETLGCRRVAILDFDVHHGNGVAAIVKGDDRIRYSSIHQGGIFPGTGGAEDTGPLGNLKHLPFFGVGERWETYEARFEE-ALEWLREFEPDLLIVSAGYDALEADELATASLQPEDYARMGSRLREVFGNRVAFGLEGGYNLQETPKAIRMTLEPFL 1185
+ +IY D L H GY HPE P R++ K L + + W+ P+ E+ + +ER+H Y++ ++++ GGG +D DT V P +FEV + A S W+D + PAF LARPPGHHA S + MGFC+ AA+AA +ALE G +RVA+LD+DVHHGNG AIV+ + +I Y S+H+ +PGTG A++ G N+ +LP G G + Y++ FE+ + +L +F+PDLLIVSAGYDA AD L L PEDY + ++ R+ FGLEGGY+L+ +A+ T+ L
Sbjct: 2 LPIIYSDEFLHHET--GYFHPEKPERLTVIKDALKAATWADRLEWRSPTPPETR----PVMPILERIHSPRYIEAVRQLATTGGGYIDADTPVSPRTFEVALLAVSGWLDGIDHVLAADNPAFVLARPPGHHALSQMGMGFCIFSNAAIAAHYALEQPGIKRVAVLDWDVHHGNGTQAIVETNSQIAYCSLHESPQYPGTGAADERGLYDNVLNLPMRG-GSTIKGYQSAFEQKVMPFLSKFQPDLLIVSAGYDAAAADPLGGILLNPEDYGLLTEYCLQLT-RRIVFGLEGGYDLEAIAQAVTATIARCL 304
BLAST of mRNA_F-serratus_M_contig100.116.1 vs. uniprot
Match: A0A1J1LV29_9CYAN (Hist_deacetyl domain-containing protein n=2 Tax=Microcoleaceae TaxID=1892252 RepID=A0A1J1LV29_9CYAN) HSP 1 Score: 231 bits (588), Expect = 2.720e-66 Identity = 134/311 (43.09%), Postives = 185/311 (59.49%), Query Frame = 1
Query: 265 VTVIYDDFMLKHRPPPGYPHPECPARVSTAKAELDGV---EGVCWKVPSSLESEEAKAATLTAIERVHRKEYLDEIKRICARGGGGVDFDTYVCPESFEVCVAASSAWMDAAESAALRGRPAFALARPPGHHATSGVAMGFCLVCFAAVAAFHALETLGCRRVAILDFDVHHGNGVAAIVKGDDRIRYSSIHQGGIFPGTGGAEDTGPLGNLKHLPFFGVGERWETYEARFEE-ALEWLREFEPDLLIVSAGYDALEADELATASLQPEDYARMGSRLREVFGNRVAFGLEGGYNLQETPKAIRMTLEPFL 1185
+TVIY D L H+ G HPE P R++ L V E + WK+P+ + + + +E VH ++ +K I +GGG +D DT + ES++V + A SAW+D + G PAF LARPPGHHA + MGFCL AA+AA++ LE G +VAILD+DVHHGNG A+V+ D RI Y S+HQ +PGTG AE+ G N+ +LP G + Y+ F+ L +L++ +PDLLIVSAGYDA + D LA+ SLQPEDY ++ R+ FGLEGGY+L +++ TLE L
Sbjct: 2 LTVIYSDEFLNHKT--GLFHPERPERLTAIVNALKSVSWAEKLDWKLPTPVM--DRLQPLMRLLETVHTSSHIQRVKAIADQGGGYLDGDTPMSAESYDVALLAVSAWLDGVDQVLTTGHPAFVLARPPGHHAEADRGMGFCLFSNAAIAAYYGLEQPGIEKVAILDWDVHHGNGTQALVEDDPRIAYCSLHQSPCYPGTGYAEERGSHNNVLNLPL-SPGSTIDLYKPAFQHYILPFLQQVQPDLLIVSAGYDANQDDPLASISLQPEDYGLFTEYCLQLTP-RILFGLEGGYDLPSLSQSVVATLEKCL 306
BLAST of mRNA_F-serratus_M_contig100.116.1 vs. uniprot
Match: A0A6P0JUY3_9CYAN (Histone deacetylase n=1 Tax=Kamptonema sp. SIO4C4 TaxID=2607773 RepID=A0A6P0JUY3_9CYAN) HSP 1 Score: 231 bits (588), Expect = 2.720e-66 Identity = 130/309 (42.07%), Postives = 181/309 (58.58%), Query Frame = 1
Query: 271 VIYDDFMLKHRPPPGYPHPECPARVSTAKAELDGV---EGVCWKVPSSLESEEAKAATLTAIERVHRKEYLDEIKRICARGGGGVDFDTYVCPESFEVCVAASSAWMDAAESAALRGRPAFALARPPGHHATSGVAMGFCLVCFAAVAAFHALETLGCRRVAILDFDVHHGNGVAAIVKGDDRIRYSSIHQGGIFPGTGGAEDTGPLGNLKHLPFFGVGERWETYEARF-EEALEWLREFEPDLLIVSAGYDALEADELATASLQPEDYARMGSRLREVFGNRVAFGLEGGYNLQETPKAIRMTLEPFL 1185
+IY D L H+P + HPECP R++ L V + + W+ P+ +E E L +E++H +YL ++ + RGGG +D DTY+ PES++V + A SAW D + PAF LARPPGHHA + MGFCL A+AA +ALE +RVAI+D+DVHHGNG +V+ + I Y S HQ +PG+G +TG N+ +LP G G + Y+ F E + +LR+FEPDLL+VSAG+DA D LA SLQ +DY L V + FGLEGGY+L P+++ T+E L
Sbjct: 4 IIYSDRFLDHKP--RHYHPECPERLTAIVNALKSVSWSDRIDWQTPTPVEQREV----LPWLEKLHSPKYLTLVRTMAERGGGMLDTDTYIAPESYDVALLAVSAWFDGVDRVLSSHNPAFVLARPPGHHAEATTGMGFCLFSNVAIAAHYALEKPNVQRVAIVDWDVHHGNGTQHLVENNPNIAYCSFHQFPCYPGSGRDTETGMYNNILNLPM-GAGSTLKDYQPLFIERVIPFLRQFEPDLLLVSAGFDAHRDDPLAGVSLQSQDYQAFTKMLLPVT-RCILFGLEGGYDLDALPQSVIATIEGCL 304
BLAST of mRNA_F-serratus_M_contig100.116.1 vs. uniprot
Match: UPI0016851D2E (histone deacetylase n=1 Tax=Anabaena sphaerica TaxID=212446 RepID=UPI0016851D2E) HSP 1 Score: 230 bits (587), Expect = 3.460e-66 Identity = 138/311 (44.37%), Postives = 182/311 (58.52%), Query Frame = 1
Query: 265 VTVIYDDFMLKHRPPPGYPHPECPARVSTAKAEL---DGVEGVCWKVPSSLESEEAKAATLTAIERVHRKEYLDEIKRICARGGGGVDFDTYVCPESFEVCVAASSAWMDAAESAALRGRPAFALARPPGHHATSGVAMGFCLVCFAAVAAFHALETLGCRRVAILDFDVHHGNGVAAIVKGDDRIRYSSIHQGGIFPGTGGAEDTGPLGNLKHLPFFGVGERWETYEARFE-EALEWLREFEPDLLIVSAGYDALEADELATASLQPEDYARMGSRLREVFGNRVAFGLEGGYNLQETPKAIRMTLEPFL 1185
+ VIY + L H+ G HPE P R+S L D E + W P+ ++ E ++ IE H Y+ ++K I A GGG +D DT V P S++V + A SAW+D + R PAF LARPPGHHA S MGFCL AA++AF+AL+ G RVAILD+DVHHGNG AIV+ +I Y S+HQ +PGTG A + G N+ +LP G Y+ +E + L +L F+PDLLIVSAGYDALE D LA+ SLQPED+ V ++ FGLEGGY+L K++ T+ P L
Sbjct: 2 LPVIYSEEFLDHKT--GRYHPERPERLSAVVKALKTADFAEKIHWLHPTPVKPE-----LMSWIETAHTATYIQKLKDIAATGGGYLDGDTPVSPRSYDVALLAVSAWLDGVDMVLTRENPAFVLARPPGHHAESNTGMGFCLFSNAAISAFYALKQPGINRVAILDWDVHHGNGTQAIVETHSQIAYCSLHQYPCYPGTGRASEKGLHNNVLNLPL-PPGSDLSVYQPLWEHKILPFLTNFQPDLLIVSAGYDALEDDPLASMSLQPEDFGLFTQYCLGVT-RKILFGLEGGYDLASLSKSVTATIGPCL 303 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig100.116.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pages
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig100.116.1 >prot_F-serratus_M_contig100.116.1 ID=prot_F-serratus_M_contig100.116.1|Name=mRNA_F-serratus_M_contig100.116.1|organism=Fucus serratus male|type=polypeptide|length=388bp MATDVLSRIRWLTIILSARAWHNALDGPAALGARSDTIGGSRRTYVFPSQback to top mRNA from alignment at F-serratus_M_contig100:733414..767471+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig100.116.1 ID=mRNA_F-serratus_M_contig100.116.1|Name=mRNA_F-serratus_M_contig100.116.1|organism=Fucus serratus male|type=mRNA|length=34058bp|location=Sequence derived from alignment at F-serratus_M_contig100:733414..767471+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig100:733414..767471+ >mRNA_F-serratus_M_contig100.116.1 ID=mRNA_F-serratus_M_contig100.116.1|Name=mRNA_F-serratus_M_contig100.116.1|organism=Fucus serratus male|type=CDS|length=2328bp|location=Sequence derived from alignment at F-serratus_M_contig100:733414..767471+ (Fucus serratus male)back to top |