mRNA_F-serratus_M_contig100.114.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig100.114.1
Unique NamemRNA_F-serratus_M_contig100.114.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig100.114.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig100contigF-serratus_M_contig100:671868..672753 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size886
Cds size885
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928788.2316902-CDS-F-serratus_M_contig100:671867..6727521622928788.2316902-CDS-F-serratus_M_contig100:671867..672752Fucus serratus maleCDSF-serratus_M_contig100 671868..672752 +
1690962571.7669003-CDS-F-serratus_M_contig100:671867..6727521690962571.7669003-CDS-F-serratus_M_contig100:671867..672752Fucus serratus maleCDSF-serratus_M_contig100 671868..672752 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig100.114.1prot_F-serratus_M_contig100.114.1Fucus serratus malepolypeptideF-serratus_M_contig100 671868..672752 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig100.114.1

>prot_F-serratus_M_contig100.114.1 ID=prot_F-serratus_M_contig100.114.1|Name=mRNA_F-serratus_M_contig100.114.1|organism=Fucus serratus male|type=polypeptide|length=295bp
PREDSQLQETPRVSSKSEPSSPSGSDGDLVLGEAASILSKEMEGRGRKCS
DEQHGKPSCVVPDSKDGGSSDGWSDGDTVIGEVGVGVEEGADAEEGDGSK
GVAAGRTITTVAKNTEGVKKGTEGHVGDERELRLPEPPGAGAGGEKKEVA
YSRGGLFARLDRREIMSDPAEVVKEGTHTPTARATNDGPVRRRKRRKSSS
VVEPSGSSNGGGIGSRVSEVKEGEMEEKHKQERKSGSNSKAGAAEGGGGV
NENGGRKMGKNMMKRVLALAAGAILPTGKRKRKAASTSGVACPTF
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mRNA from alignment at F-serratus_M_contig100:671868..672753+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig100.114.1 ID=mRNA_F-serratus_M_contig100.114.1|Name=mRNA_F-serratus_M_contig100.114.1|organism=Fucus serratus male|type=mRNA|length=886bp|location=Sequence derived from alignment at F-serratus_M_contig100:671868..672753+ (Fucus serratus male)
CCTCGAGAAGACTCGCAGCTGCAGGAAACGCCGAGGGTTTCCTCGAAGAG
CGAGCCAAGTTCCCCCAGTGGGAGTGACGGGGACCTGGTGCTAGGGGAAG
CGGCCTCGATCCTGTCGAAGGAAATGGAGGGGAGAGGTAGAAAGTGTTCC
GACGAGCAGCACGGGAAGCCTTCGTGCGTTGTGCCCGACAGCAAGGACGG
GGGGAGTTCCGACGGGTGGAGCGATGGGGACACAGTGATCGGCGAGGTGG
GCGTAGGTGTAGAAGAAGGGGCAGACGCGGAAGAGGGTGATGGGTCTAAG
GGGGTTGCGGCGGGTCGGACAATCACAACCGTTGCGAAGAATACGGAAGG
CGTAAAGAAGGGTACAGAGGGACACGTGGGAGACGAACGTGAGCTGAGGT
TGCCCGAGCCACCCGGTGCGGGCGCCGGCGGGGAGAAAAAAGAGGTAGCG
TATTCGCGCGGAGGGTTGTTTGCTCGGCTTGATCGAAGGGAAATTATGAG
CGATCCGGCGGAGGTGGTGAAGGAGGGTACTCATACGCCCACCGCGAGAG
CAACCAATGATGGGCCGGTGAGGCGGCGTAAGAGGCGTAAATCAAGCAGT
GTGGTGGAGCCGTCTGGTAGCAGCAATGGAGGCGGCATCGGCAGCCGTGT
CAGCGAGGTCAAGGAGGGAGAAATGGAGGAGAAGCACAAGCAGGAACGGA
AAAGTGGTAGCAACAGCAAGGCTGGGGCTGCTGAGGGAGGAGGGGGGGTG
AACGAGAACGGAGGCAGAAAGATGGGGAAAAACATGATGAAAAGGGTCCT
CGCCCTGGCCGCCGGCGCGATCCTCCCCACCGGCAAGCGGAAAAGAAAAG
CCGCGTCTACTTCCGGCGTGGCTTGCCCAACCTTCC
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Coding sequence (CDS) from alignment at F-serratus_M_contig100:671868..672753+

>mRNA_F-serratus_M_contig100.114.1 ID=mRNA_F-serratus_M_contig100.114.1|Name=mRNA_F-serratus_M_contig100.114.1|organism=Fucus serratus male|type=CDS|length=1770bp|location=Sequence derived from alignment at F-serratus_M_contig100:671868..672753+ (Fucus serratus male)
CCTCGAGAAGACTCGCAGCTGCAGGAAACGCCGAGGGTTTCCTCGAAGAG
CGAGCCAAGTTCCCCCAGTGGGAGTGACGGGGACCTGGTGCTAGGGGAAG
CGGCCTCGATCCTGTCGAAGGAAATGGAGGGGAGAGGTAGAAAGTGTTCC
GACGAGCAGCACGGGAAGCCTTCGTGCGTTGTGCCCGACAGCAAGGACGG
GGGGAGTTCCGACGGGTGGAGCGATGGGGACACAGTGATCGGCGAGGTGG
GCGTAGGTGTAGAAGAAGGGGCAGACGCGGAAGAGGGTGATGGGTCTAAG
GGGGTTGCGGCGGGTCGGACAATCACAACCGTTGCGAAGAATACGGAAGG
CGTAAAGAAGGGTACAGAGGGACACGTGGGAGACGAACGTGAGCTGAGGT
TGCCCGAGCCACCCGGTGCGGGCGCCGGCGGGGAGAAAAAAGAGGTAGCG
TATTCGCGCGGAGGGTTGTTTGCTCGGCTTGATCGAAGGGAAATTATGAG
CGATCCGGCGGAGGTGGTGAAGGAGGGTACTCATACGCCCACCGCGAGAG
CAACCAATGATGGGCCGGTGAGGCGGCGTAAGAGGCGTAAATCAAGCAGT
GTGGTGGAGCCGTCTGGTAGCAGCAATGGAGGCGGCATCGGCAGCCGTGT
CAGCGAGGTCAAGGAGGGAGAAATGGAGGAGAAGCACAAGCAGGAACGGA
AAAGTGGTAGCAACAGCAAGGCTGGGGCTGCTGAGGGAGGAGGGGGGGTG
AACGAGAACGGAGGCAGAAAGATGGGGAAAAACATGATGAAAAGGGTCCT
CGCCCTGGCCGCCGGCGCGATCCTCCCCACCGGCAAGCGGAAAAGAAAAG
CCGCGTCTACTTCCGGCGTGGCTTGCCCAACCTTCCCTCGAGAAGACTCG
CAGCTGCAGGAAACGCCGAGGGTTTCCTCGAAGAGCGAGCCAAGTTCCCC
CAGTGGGAGTGACGGGGACCTGGTGCTAGGGGAAGCGGCCTCGATCCTGT
CGAAGGAAATGGAGGGGAGAGGTAGAAAGTGTTCCGACGAGCAGCACGGG
AAGCCTTCGTGCGTTGTGCCCGACAGCAAGGACGGGGGGAGTTCCGACGG
GTGGAGCGATGGGGACACAGTGATCGGCGAGGTGGGCGTAGGTGTAGAAG
AAGGGGCAGACGCGGAAGAGGGTGATGGGTCTAAGGGGGTTGCGGCGGGT
CGGACAATCACAACCGTTGCGAAGAATACGGAAGGCGTAAAGAAGGGTAC
AGAGGGACACGTGGGAGACGAACGTGAGCTGAGGTTGCCCGAGCCACCCG
GTGCGGGCGCCGGCGGGGAGAAAAAAGAGGTAGCGTATTCGCGCGGAGGG
TTGTTTGCTCGGCTTGATCGAAGGGAAATTATGAGCGATCCGGCGGAGGT
GGTGAAGGAGGGTACTCATACGCCCACCGCGAGAGCAACCAATGATGGGC
CGGTGAGGCGGCGTAAGAGGCGTAAATCAAGCAGTGTGGTGGAGCCGTCT
GGTAGCAGCAATGGAGGCGGCATCGGCAGCCGTGTCAGCGAGGTCAAGGA
GGGAGAAATGGAGGAGAAGCACAAGCAGGAACGGAAAAGTGGTAGCAACA
GCAAGGCTGGGGCTGCTGAGGGAGGAGGGGGGGTGAACGAGAACGGAGGC
AGAAAGATGGGGAAAAACATGATGAAAAGGGTCCTCGCCCTGGCCGCCGG
CGCGATCCTCCCCACCGGCAAGCGGAAAAGAAAAGCCGCGTCTACTTCCG
GCGTGGCTTGCCCAACCTTC
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