mRNA_F-serratus_M_contig100.110.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig100.110.1 vs. uniprot
Match: A0A5A8ENP4_CAFRO (Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial n=2 Tax=Sar TaxID=2698737 RepID=A0A5A8ENP4_CAFRO) HSP 1 Score: 464 bits (1194), Expect = 2.140e-155 Identity = 252/436 (57.80%), Postives = 311/436 (71.33%), Query Frame = 1
Query: 151 SGCPGQQVRRLNVHEYVSMQIMADHNIDIPVSKMAETPEAAEQACKEIKGGDEMKDVVIKAQVLSGGRGRGHFDNGFKSGVHMCLKPSEAREYAEKMLGHKLITKQTGEAGLPCNKARDQPITVLLMERMYIRREMYLSIMMDRASQGPVIVACPDGGTSIEDLAESNPELILKEEVDVMEGLTDAQAAKIAKHLKLEGPAFEAGKT-------LLKNMYTMFDEKDCTLVEINPLAETADGRVMACDAKLNFDDNAEWRQKETFAHRDYSQEDTREVEAAKYDLNYIGLTGNIGCMVNGAGLAMSTMDIIKLKGGDPANFLDVGGGANEEQVQKAFELLDSDPSVATILVNIFGGIMRCDVIATGVINAAKNIGLKKPIVIRLQGTNVEQANELIANSGYKMIISEDLEDAAVKAVAVAEIYSQAVKVGIDVELQ 1437
+ C Q+ R LNVHE+V M++M +I +P +A TPE AE+ + G E DVVIKAQ+L+GGRG G F NGF+ GVH+ P +ARE A KMLG +L+TKQTG +G + V LMER+Y+RREMY SI++DRAS GPV+VA P GGT+IED+AE PE I KE D+ EG + Q ++A G F G + N+Y MF E D T VEINPLAET DG V CDAKLNFDDNAE+RQ E F RD +QED REVEAAK+DLNYIGL GNIGCMVNGAGLAM+TMDIIKL GG+PANFLDVGGGA E+QV++A +LD+DP V TILVNIFGGIMRCDVIA G+I AAK++GL+KP+V+RLQGTNVE A +I S ++I+ +DL++AA KAV +AEI QA ++ IDV +
Sbjct: 40 TSCAAQR-RHLNVHEHVGMELMRKFDIPVPRGSVATTPEEAEEVHRSHLAGGEKADVVIKAQILAGGRGLGTFVNGFQGGVHVVTMPGQAREMAAKMLGQRLVTKQTGPSGREVTR-------VYLMERLYMRREMYFSIVLDRASGGPVLVASPKGGTAIEDVAEKTPEFIFKEACDLEEGPSAEQLTRLAV-----GMGFAEGSRGIDECVQAMSNIYRMFRELDATQVEINPLAETPDGHVFVCDAKLNFDDNAEFRQSEVFELRDPTQEDPREVEAAKHDLNYIGLDGNIGCMVNGAGLAMATMDIIKLHGGNPANFLDVGGGATEQQVKEALRILDADPGVQTILVNIFGGIMRCDVIAQGIIAAAKDVGLRKPLVVRLQGTNVEAAKRVIEASDVRIIMEDDLDEAAKKAVGLAEIVRQANQIKIDVHFE 462
BLAST of mRNA_F-serratus_M_contig100.110.1 vs. uniprot
Match: A0A024GFW4_9STRA (Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial n=2 Tax=Albugo TaxID=65356 RepID=A0A024GFW4_9STRA) HSP 1 Score: 461 bits (1187), Expect = 2.990e-155 Identity = 243/409 (59.41%), Postives = 304/409 (74.33%), Query Frame = 1
Query: 214 MADHNIDIPVSKMAETPEAAEQACKEIKGGDEMKDVVIKAQVLSGGRGRGHFDNGFKSGVHMCLKPSEAREYAEKMLGHKLITKQTGEAGLPCNKARDQPITVLLMERMYIRREMYLSIMMDRASQGPVIVACPDGGTSIEDLAESNPELILKEEVDVMEGLTDAQAAKIAKHLKLEGPAFEAGKTLLKNMYTMFDEKDCTLVEINPLAETADGRVMACDAKLNFDDNAEWRQKETFAHRDYSQEDTREVEAAKYDLNYIGLTGNIGCMVNGAGLAMSTMDIIKLKGGDPANFLDVGGGANEEQVQKAFELLDSDPSVATILVNIFGGIMRCDVIATGVINAAKNIGLKKPIVIRLQGTNVEQANELIANSGYKMIISEDLEDAAVKAVAVAEIYSQAVKVGIDVELQS 1440
M ++ I IP A TP+ A++A +I G DVVIKAQ L+GGRG GHF NGFK GVHMC KP +A+ +A KM+G L+TKQTG+ G+ K VLLMER+Y+RREMY SI+MDRASQGPVIVA P GGTSIED+A + PELI K+ +D+ G T Q + + L + +++N+Y MF D TLVEINPLAET G V+ACDAK+NFDDNA +R + FA RD +QED REVEA+ +DLNYIGL GNIGC+VNGAGLAM+TMDII L GG PANFLDVGGGA E QV+KAFE+L+ D V +ILVNIFGGIMRCDVIA G+I AAK++ L+KPI++RLQGTNVE+A +LIA+SG+KMI++++L+DAA KAV +A I SQA + + V L+S
Sbjct: 1 MKEYGIQIPEGVPAMTPDEADKAYMKIVGNKSNADVVIKAQALTGGRGLGHFKNGFKGGVHMCTKPEDAKTFASKMIGQTLVTKQTGDRGIKVAK-------VLLMERVYMRREMYFSILMDRASQGPVIVASPAGGTSIEDVAAATPELIFKQVIDIQTGPTKDQIDFLVEKLGCNDKSTSKMAEMIQNLYNMFIGVDATLVEINPLAETPSGDVLACDAKINFDDNAAFRHPDIFAKRDKTQEDPREVEASAFDLNYIGLDGNIGCLVNGAGLAMATMDIISLFGGSPANFLDVGGGATEAQVKKAFEILNRDDQVKSILVNIFGGIMRCDVIAAGIIAAAKDLDLEKPIIVRLQGTNVEKARQLIADSGFKMIVADNLDDAAQKAVKIAGIVSQAQEANLRVTLES 402
BLAST of mRNA_F-serratus_M_contig100.110.1 vs. uniprot
Match: A0A0G4EP40_VITBC (Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EP40_VITBC) HSP 1 Score: 457 bits (1176), Expect = 4.580e-153 Identity = 238/428 (55.61%), Postives = 306/428 (71.50%), Query Frame = 1
Query: 148 ASGCPGQQVRRLNVHEYVSMQIMADHNIDIPVSKMAETPEAAEQACKEIKGGDEMKDVVIKAQVLSGGRGRGHF-DNGFKSGVHMCLKPSEAREYAEKMLGHKLITKQTGEAGLPCNKARDQPITVLLMERMYIRREMYLSIMMDRASQGPVIVACPDGGTSIEDLAESNPELILKEEVDVMEGLTDAQAAKIAKHLKLEGPAFEAGKTLLKNMYTMFDEKDCTLVEINPLAETADGRVMACDAKLNFDDNAEWRQKETFAHRDYSQEDTREVEAAKYDLNYIGLTGNIGCMVNGAGLAMSTMDIIKLKGGDPANFLDVGGGANEEQVQKAFELLDSDPSVATILVNIFGGIMRCDVIATGVINAAKNIGLKKPIVIRLQGTNVEQANELIANSGYKMIISEDLEDAAVKAVAVAEIYSQAVKVGIDV 1428
A G P Q R LN+HEY S+Q+M +++ P A T AE A ++ D V+KAQVL+GGRG G+F +NGF+ GVH C PS+ +E A+KMLG+ L+TKQTGEAG PCN + + ER+Y+RRE Y +I+MDR+S GP+++ GGTSIED+A +P I+K +D+ GL++AQA + A+ L EG + + +Y MF +KDCTLVEINP AET DGRVM CDAK+NFDDNAE+R ++ F RD +QED REV+AA++DLNY+GL GNIGCMVNGAGLAM+TMDIIKL GG PANFLDVGGGA++ QV +AF +L +DP V ILVNIFGGIMRCD IA GVI+A++ IGL KP+V+RL+GTN EQA +LI SG KM+ S DL ++A KAV +AEI A +DV
Sbjct: 15 ARGFPALQKRWLNLHEYQSVQVMQSYHVHTPKGLPAFTGREAEAAASALQAEQGDIDFVVKAQVLAGGRGLGYFKENGFQGGVHQCQSPSKVKEIAKKMLGNTLVTKQTGEAGKPCN-------AIFVCERLYLRREKYFAILMDRSSGGPLMIGSAVGGTSIEDIAAKDPTAIVKMPIDITVGLSEAQAREFAEKLAFEGDRVDQAAQCIMGLYKMFIDKDCTLVEINPFAETHDGRVMVCDAKVNFDDNAEFRHEDIFEMRDTTQEDPREVQAARFDLNYVGLDGNIGCMVNGAGLAMATMDIIKLNGGSPANFLDVGGGASKTQVVEAFRILQNDPKVKAILVNIFGGIMRCDTIALGVIHASQEIGLSKPLVVRLEGTNQEQAKKLIDESGLKMLFSTDLSESASKAVKMAEIIELAESAELDV 435
BLAST of mRNA_F-serratus_M_contig100.110.1 vs. uniprot
Match: A0A7S3V6S0_9STRA (Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V6S0_9STRA) HSP 1 Score: 455 bits (1170), Expect = 2.530e-152 Identity = 243/404 (60.15%), Postives = 306/404 (75.74%), Query Frame = 1
Query: 172 VRRLNVHEYVSMQIMADHNIDIPVSKMAETPEAAEQACKEIKGGDEMKDVVIKAQVLSGGRGRGHFDNGFKSGVHMCLKPSEAREYAEKMLGHKLITKQTGEAGLPCNKARDQPITVLLMERMYIRREMYLSIMMDRASQGPVIVACPDGGTSIEDLAESNPELILKEEVDVMEGLTDAQAAKIAKHLKLEGPAFEAGKT--LLKNMYTMFDEKDCTLVEINPLAETADGRVMACDAKLNFDDNAEWRQKETFAHRDYSQEDTREVEAAKYDLNYIGLTGNIGCMVNGAGLAMSTMDIIKLKGGDPANFLDVGGGANEEQVQKAFELLDSDPSVATILVNIFGGIMRCDVIATGVINAAKNIGLKKPIVIRLQGTNVEQANELIANSGYKMIISEDLEDAAVKA 1377
VR LNVHE+VSM++ + I P +A TPE AE A K + DE+ VIKAQVLSGGRG G F NGF+ GVHM +A+EYA MLG +L+TKQ + G+ CN+ V LME+M I+ EMYLS++MDRAS GPV+V P GGTSIED+AESNPELI K+ +D+ GL D A +A ++ L + + K L+KN+Y MF + DCT VEINPLAE+ +G+V+ CDAK+NFDDNAE+R K+ FA RD +QED REV A+KYDLNYIGL G+IGCMVNGAGLAMSTMDII+LKG PANFLDVGGGA EEQV KAFE+L++D +V ILVNIFGGIM+CD+IA G++ AA+NIGLKKP+V+RL+GTNVEQ +LIA+SG ++ +++DL+DAA KA
Sbjct: 29 VRNLNVHEHVSMELFNEKGIATPKGIVATTPEEAEAAYKSMGNPDEL---VIKAQVLSGGRGLGTFKNGFQGGVHMISSADQAKEYASSMLGQELVTKQNPK-GIVCNR-------VYLMEKMNIKTEMYLSLLMDRASGGPVMVGSPRGGTSIEDVAESNPELIFKQPIDITVGLLDEDAGAMATNIGLVEGSDQHAKAVELMKNLYGMFLDCDCTQVEINPLAESVEGQVVVCDAKVNFDDNAEFRNKDVFAKRDTTQEDPREVAASKYDLNYIGLDGSIGCMVNGAGLAMSTMDIIQLKGSSPANFLDVGGGATEEQVTKAFEILNADDNVKVILVNIFGGIMKCDIIAGGIVAAAQNIGLKKPLVVRLEGTNVEQGQKLIADSGIEVTLADDLDDAAEKA 421
BLAST of mRNA_F-serratus_M_contig100.110.1 vs. uniprot
Match: A0A5D6YJ52_9STRA (Succinate-CoA ligase subunit beta (Fragment) n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YJ52_9STRA) HSP 1 Score: 449 bits (1155), Expect = 1.640e-150 Identity = 245/424 (57.78%), Postives = 306/424 (72.17%), Query Frame = 1
Query: 166 QQVRRLNVHEYVSMQIMADHNIDIPVSKMAETPEAAEQACKEIKGGDEMKDVVIKAQVLSGGRGRGHFDNGFKSGVHMCLKPSEAREYAEKMLGHKLITKQTGEAGLPCNKARDQPITVLLMERMYIRREMYLSIMMDRASQGPVIVACPDGGTSIEDLAESNPELILKEEVDVMEGLTDAQAAKIAKHLKLEGPAFEAGKTLLKNMYTMFDEKDCTLVEINPLAETADGRVMACDAKLNFDDNAEWRQKETFAHRDYSQEDTREVEAAKYDLNYIGLTGNIGCMVNGAGLAMSTMDIIKLKGGDPANFLDVGGGANEEQVQKAFELLDSDPSVATILVNIFGGIMRCDVIATGVINAAKNIGLKKPIVIRLQGTNVEQANELIANSGYKMIISEDLEDAAVKAVAVAEIYSQAVKVGIDVELQ 1437
QQVRRLN+HEY S+ IM + P A TP AE A +IK G + G R +P +AR+ AEKMLG L+TKQTG G+ K V L+ER+Y+RREMY SI+MDRASQGPVIVA P GGTSIED+A + PELI KE VD+M G+TDAQ A++A++L ++ + + +++N+Y +F D TLVEINPLAET +G + ACDAKLNFDDNA +R K+ FA RD SQED REVEA+ YDLNYIGL GNIGC+VNGAGLAM+TMDII L GG PANFLDVGGGA E QV+KAFE+L++D V +ILVNIFGGIMRCDVIA G+I AA+++GLKKPIVIRLQGTNVE+A ELIA+SG+KMI+++DL+DAA KAV +A+I +QA +V ++V +
Sbjct: 8 QQVRRLNLHEYQSLDIMKTFGVATPQGIPASTPAEAEAAFNKIKAG----------RTWGGAR-----------------RPEQARQIAEKMLGQTLVTKQTGAKGIEVAK-------VFLVERVYMRREMYFSILMDRASQGPVIVASPAGGTSIEDVAAATPELIFKENVDIMTGVTDAQVARLARNLGVDDASVPQLEAMIRNLYKLFIGVDATLVEINPLAETREGEIFACDAKLNFDDNAGFRHKDIFAQRDKSQEDPREVEASAYDLNYIGLDGNIGCLVNGAGLAMATMDIISLYGGSPANFLDVGGGATEAQVKKAFEILNADDKVKSILVNIFGGIMRCDVIAAGIIAAARDLGLKKPIVIRLQGTNVEKARELIASSGFKMIMADDLDDAAEKAVKIADIVAQAEQVKLNVAFE 397 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig100.110.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pages
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig100.110.1 >prot_F-serratus_M_contig100.110.1 ID=prot_F-serratus_M_contig100.110.1|Name=mRNA_F-serratus_M_contig100.110.1|organism=Fucus serratus male|type=polypeptide|length=469bp MASLRAVSCCARSLRNPRGLARTASLISGQPLASASGCPGQQVRRLNVHEback to top mRNA from alignment at F-serratus_M_contig100:490732..520634- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig100.110.1 ID=mRNA_F-serratus_M_contig100.110.1|Name=mRNA_F-serratus_M_contig100.110.1|organism=Fucus serratus male|type=mRNA|length=29903bp|location=Sequence derived from alignment at F-serratus_M_contig100:490732..520634- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig100:490732..520634- >mRNA_F-serratus_M_contig100.110.1 ID=mRNA_F-serratus_M_contig100.110.1|Name=mRNA_F-serratus_M_contig100.110.1|organism=Fucus serratus male|type=CDS|length=2814bp|location=Sequence derived from alignment at F-serratus_M_contig100:490732..520634- (Fucus serratus male)back to top |