mRNA_F-serratus_M_contig100.105.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig100.105.1
Unique NamemRNA_F-serratus_M_contig100.105.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig100.105.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig100contigF-serratus_M_contig100:157631..158031 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size401
Cds size399
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928788.1301003-CDS-F-serratus_M_contig100:157630..1580291622928788.1301003-CDS-F-serratus_M_contig100:157630..158029Fucus serratus maleCDSF-serratus_M_contig100 157631..158029 +
1690962571.7396104-CDS-F-serratus_M_contig100:157630..1580291690962571.7396104-CDS-F-serratus_M_contig100:157630..158029Fucus serratus maleCDSF-serratus_M_contig100 157631..158029 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig100.105.1prot_F-serratus_M_contig100.105.1Fucus serratus malepolypeptideF-serratus_M_contig100 157631..158029 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig100.105.1

>prot_F-serratus_M_contig100.105.1 ID=prot_F-serratus_M_contig100.105.1|Name=mRNA_F-serratus_M_contig100.105.1|organism=Fucus serratus male|type=polypeptide|length=133bp
PGGKLSTATDSAAAVELPAAFFFVEPGFTCKPALGPTNGLKPAACGRTMA
ATTTAAMPIRVRGGSFSSRWTGTDDVRRQAVALVRVVPAALRVVVEAISI
SARSCTPGRRLGVTAKGLLAVQTGRMGACRSDP
back to top

mRNA from alignment at F-serratus_M_contig100:157631..158031+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig100.105.1 ID=mRNA_F-serratus_M_contig100.105.1|Name=mRNA_F-serratus_M_contig100.105.1|organism=Fucus serratus male|type=mRNA|length=401bp|location=Sequence derived from alignment at F-serratus_M_contig100:157631..158031+ (Fucus serratus male)
CCAGGAGGCAAACTTTCCACCGCTACCGACTCCGCAGCAGCGGTTGAGCT
CCCCGCGGCATTCTTTTTCGTGGAGCCGGGTTTCACCTGCAAGCCTGCTC
TTGGACCCACTAATGGGTTGAAGCCCGCCGCGTGTGGCAGGACGATGGCG
GCAACGACAACTGCAGCGATGCCCATCAGAGTACGAGGCGGAAGCTTCAG
CTCCCGATGGACGGGTACCGACGATGTACGTCGCCAGGCAGTAGCCCTTG
TCAGAGTCGTGCCGGCTGCCTTGCGTGTGGTCGTTGAGGCCATTTCAATA
AGCGCTAGAAGCTGTACTCCAGGGAGGAGGTTGGGAGTGACGGCGAAGGG
GTTGTTGGCGGTTCAGACTGGCCGTATGGGGGCCTGTAGATCTGACCCAA
A
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig100:157631..158031+

>mRNA_F-serratus_M_contig100.105.1 ID=mRNA_F-serratus_M_contig100.105.1|Name=mRNA_F-serratus_M_contig100.105.1|organism=Fucus serratus male|type=CDS|length=798bp|location=Sequence derived from alignment at F-serratus_M_contig100:157631..158031+ (Fucus serratus male)
CCAGGAGGCAAACTTTCCACCGCTACCGACTCCGCAGCAGCGGTTGAGCT
CCCCGCGGCATTCTTTTTCGTGGAGCCGGGTTTCACCTGCAAGCCTGCTC
TTGGACCCACTAATGGGTTGAAGCCCGCCGCGTGTGGCAGGACGATGGCG
GCAACGACAACTGCAGCGATGCCCATCAGAGTACGAGGCGGAAGCTTCAG
CTCCCGATGGACGGGTACCGACGATGTACGTCGCCAGGCAGTAGCCCTTG
TCAGAGTCGTGCCGGCTGCCTTGCGTGTGGTCGTTGAGGCCATTTCAATA
AGCGCTAGAAGCTGTACTCCAGGGAGGAGGTTGGGAGTGACGGCGAAGGG
GTTGTTGGCGGTTCAGACTGGCCGTATGGGGGCCTGTAGATCTGACCCAC
CAGGAGGCAAACTTTCCACCGCTACCGACTCCGCAGCAGCGGTTGAGCTC
CCCGCGGCATTCTTTTTCGTGGAGCCGGGTTTCACCTGCAAGCCTGCTCT
TGGACCCACTAATGGGTTGAAGCCCGCCGCGTGTGGCAGGACGATGGCGG
CAACGACAACTGCAGCGATGCCCATCAGAGTACGAGGCGGAAGCTTCAGC
TCCCGATGGACGGGTACCGACGATGTACGTCGCCAGGCAGTAGCCCTTGT
CAGAGTCGTGCCGGCTGCCTTGCGTGTGGTCGTTGAGGCCATTTCAATAA
GCGCTAGAAGCTGTACTCCAGGGAGGAGGTTGGGAGTGACGGCGAAGGGG
TTGTTGGCGGTTCAGACTGGCCGTATGGGGGCCTGTAGATCTGACCCA
back to top