mRNA_F-serratus_M_contig10.85.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig10.85.1
Unique NamemRNA_F-serratus_M_contig10.85.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig10.85.1 vs. uniprot
Match: D7FJD2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJD2_ECTSI)

HSP 1 Score: 193 bits (491), Expect = 5.480e-52
Identity = 101/154 (65.58%), Postives = 118/154 (76.62%), Query Frame = 2
Query:    2 ADFRAREHHQGERVRAQRLEQEAAEMRPCTFAPHTNDRVLRAQGPVLVRGLGRHLELKDVAQKRGEERREREAHAFGVRPGAVRRTVLGETVLKPFSLSEGNSRGWWGQRRRRHAEERAAQCPFQPWTVEGERSMAMSRLLECSSVLAESVACG 463
            A+ RARE  Q ER  A R E+E AEM+ CTF P TN  +LRA+GPVLVRGLGRHLELKDVAQ+R  ERR  EA AFGVRP AVRR+VLGET+++PFSLS  N +GWW +RR RH  ERAAQC F+PWTVE ER  A+SRLL+ SSVL+   + G
Sbjct:  794 AELRAREREQEERFNALRQEKEVAEMQRCTFVPQTNSAILRAEGPVLVRGLGRHLELKDVAQQRERERRXXEARAFGVRPRAVRRSVLGETIVEPFSLSSDN-KGWWQERRMRHEAERAAQCTFKPWTVEAERGRALSRLLDWSSVLSSQSSRG 946          
BLAST of mRNA_F-serratus_M_contig10.85.1 vs. uniprot
Match: A0A6H5KJ13_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ13_9PHAE)

HSP 1 Score: 168 bits (426), Expect = 2.950e-47
Identity = 84/113 (74.34%), Postives = 96/113 (84.96%), Query Frame = 2
Query:  104 TNDRVLRAQGPVLVRGLGRHLELKDVAQKRGEERREREAHAFGVRPGAVRRTVLGETVLKPFSLSEGNSRGWWGQRRRRHAEERAAQCPFQPWTVEGERSMAMSRLLECSSVL 442
            TN  +LRA+GPVLVRGLGRHLELKDVAQ+R  ERREREA AFGVRPGAVRR+VLGET+++PFSLS  N +GWW +RR RH  ERAAQC F+PWTVE ER  A+SRLL+ SSVL
Sbjct:  130 TNSAILRAEGPVLVRGLGRHLELKDVAQQRERERREREAQAFGVRPGAVRRSVLGETIVEPFSLSSDN-KGWWQERRMRHEAERAAQCTFKPWTVEAERGRALSRLLDWSSVL 241          
BLAST of mRNA_F-serratus_M_contig10.85.1 vs. uniprot
Match: A0A2P6V9Q3_9CHLO (Uncharacterized protein n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V9Q3_9CHLO)

HSP 1 Score: 80.9 bits (198), Expect = 3.340e-13
Identity = 57/142 (40.14%), Postives = 77/142 (54.23%), Query Frame = 2
Query:   53 RLEQEAAEMRPCTFAPHTNDRVLRAQGPVLVRGLGRHLELKDVAQKRGEERREREAHAFGVRPGAVRRTVLGETVLKPFSLS-----EGNSRGWWGQRRRRHAEERAAQCPFQPWTVEGERSMAMSRLLECSSVLAESVACG 463
            R E+E+A +R CTFAP  N R + A+GPV+VRGL R LELK +A+++  E  +R A  F  RP A +    G TV +PF L+     E  +             +RA QCPF+P T  G R   ++ LL   S L+ES   G
Sbjct:  672 RFEEESARLRECTFAPDINRRRVEAKGPVVVRGLERVLELKQLAERQRVEAEQRAAKVFHQRPKAKQ----GATVPQPFQLAGHALLEAKAADKQASLLHSTLAQRAQQCPFRPQTNYGARRDKLAHLLAQPS-LSESELAG 808          
BLAST of mRNA_F-serratus_M_contig10.85.1 vs. uniprot
Match: A0A836CJI8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJI8_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 5.590e-13
Identity = 46/98 (46.94%), Postives = 57/98 (58.16%), Query Frame = 2
Query:   38 RVRAQRLEQEAAEMRPCTFAPHTNDRVLRAQGPVLVRGLGRHLELKDVAQKRGEERREREAHAFGVRPGAVRRTVLGETVLKPFSLSEGNSRGWWGQR 331
            R+   + E+E AEM+ CTFAP          GP+LVRGLGRHLEL D A++       R A AF VRPGA RR   G T+++PF LS   +R  W  R
Sbjct:  532 RLATAQAEREVAEMQACTFAPTLPTPPPPTSGPILVRGLGRHLELCDAARRAAAAADARAAAAFAVRPGAQRRGSDGLTLVQPFRLSGAEARVKWAAR 629          
BLAST of mRNA_F-serratus_M_contig10.85.1 vs. uniprot
Match: A0A7S1XLT3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XLT3_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 5.400e-12
Identity = 44/103 (42.72%), Postives = 63/103 (61.17%), Query Frame = 2
Query:    5 DFRAREHHQGERVRAQRLEQEAAEMRPCTFAPHTNDRVLR--AQGPVLVRGLGRHLELKDVAQKRGEERREREAHAFGVRPGAVRRTVLGETVLKPFSLSEGN 307
            D+  ++    E+ + +R E+E  EMR CTF P T  R     A  PV+VRGLGRHLEL+++A+++ EE+RERE  A+G    +  R   G T+ KPF LS  +
Sbjct:  451 DYARKQETLAEKRQRERAERELREMRECTFKPKTITRKPPKVAPKPVVVRGLGRHLELREMAKRKAEEQRERERKAWGGSTSSGGRNAAGVTIQKPFKLSRND 553          
BLAST of mRNA_F-serratus_M_contig10.85.1 vs. uniprot
Match: W4FFR4_9STRA (Uncharacterized protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FFR4_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 2.090e-11
Identity = 53/138 (38.41%), Postives = 77/138 (55.80%), Query Frame = 2
Query:   35 ERVRAQRLEQEAAEMRPCTFAPHTNDRVLR-AQGPVLVRGLGRHLELKDVAQKRGEERREREAHAFGVRPGAVRRTVLGETVLKPFSLSEGNSRGWWGQRRRRHAEERA-AQCPFQPWTVEGERSMAMSRLLECSSVL 442
            +++  QR   E  E++ CTFAP  N    + ++GPV+VRGLGR LELK +A+++  ER+EREA  F        R     TV +PF+LS    R    +R +   +E+   +C FQP T+E +    + RLLE S  L
Sbjct:  697 QKLEDQRNSLEFQELQACTFAPTINKSTTKPSRGPVVVRGLGRFLELKQLAKRQVAERKEREAKVFTQTRDYTPRAY---TVPQPFNLSFDQRRRAREERLKAEMDEKELGECTFQPHTMEHKNRRLIHRLLEQSQEL 831          
BLAST of mRNA_F-serratus_M_contig10.85.1 vs. uniprot
Match: A0A6A4ZSG0_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4ZSG0_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 6.650e-11
Identity = 52/138 (37.68%), Postives = 76/138 (55.07%), Query Frame = 2
Query:   35 ERVRAQRLEQEAAEMRPCTFAPHTNDRVLR-AQGPVLVRGLGRHLELKDVAQKRGEERREREAHAFGVRPGAVRRTVLGETVLKPFSLSEGNSRGWWGQRRRRHAEERA-AQCPFQPWTVEGERSMAMSRLLECSSVL 442
            +++  QR   E  E++ CTFAP  N    + ++GPV+VRGLGR LELK +A+++  ER+EREA  F        R     TV +PF+LS    R    +R +   +E+   +C FQP T+E +    +  LLE S  L
Sbjct:  239 QKLEDQRNSLEFQELQACTFAPAINKSTTKPSRGPVVVRGLGRFLELKQLAKRQVAERKEREAKVFTQTRDYTPRAY---TVPQPFNLSFDQRRRAREERLKAEMDEKELGECTFQPHTMEHKNRRLIHSLLEQSQEL 373          
BLAST of mRNA_F-serratus_M_contig10.85.1 vs. uniprot
Match: A0A2P6TS59_CHLSO (Uncharacterized protein n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TS59_CHLSO)

HSP 1 Score: 73.9 bits (180), Expect = 6.770e-11
Identity = 51/134 (38.06%), Postives = 66/134 (49.25%), Query Frame = 2
Query:   38 RVRAQRLEQEAAEMRPCTFAPHTNDRVLRAQGPVLVRGLGRHLELKDVAQKRGEERREREAHAFGVRPGAVRRTVLGETVLKPFSLS-----EGNSRGWWGQRRRRHAEERAAQCPFQPWTVEGERSMAMSRLL 424
            R  A R E+E   +R C+FAP  N   ++A+GPVLVRGL RHLEL+ +A +R  E   R A  F   P    RT  G TV +PF L      E  +        +    ER   C F+P T    R   ++RLL
Sbjct:  680 RAAAARAEEEEQRLRECSFAPDINRTRVQAKGPVLVRGLDRHLELRQLADRRRAEADARAARVFHANP----RTKQGATVPQPFQLRGHALLEAKAAQKQAAALQSALGERMQACTFKPQTNHARRREQLARLL 809          
BLAST of mRNA_F-serratus_M_contig10.85.1 vs. uniprot
Match: A0A7S2W6P4_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2W6P4_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 3.820e-10
Identity = 48/118 (40.68%), Postives = 69/118 (58.47%), Query Frame = 2
Query:   38 RVRAQRLEQEAAEMRPCTFAPHTND--RVLRAQGPVLVRGLGRHLELKDVAQKRGEERREREAHAFGVRPGAVRRTVLGETVLKPFSLSEGNSRGWWGQRRRRHAEERAAQCPFQPWT 385
            R++ QRLE E  E++ CTF P  N+    L+   PV+V GLGR++EL+++A+++ EE+REREA  F     +VR      TV +PF+LSE          RR++  E    C FQP T
Sbjct:  635 RLQQQRLENEYEELKECTFTPLVNNDPSSLQRDIPVVVNGLGRYMELRELAKRQVEEQREREAKIFMEDMTSVRPEPY--TVPQPFNLSEAPQ----SSTRRKYTGELPHDCTFQPKT 746          
BLAST of mRNA_F-serratus_M_contig10.85.1 vs. uniprot
Match: A0A6G0WG84_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WG84_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 1.640e-9
Identity = 48/135 (35.56%), Postives = 74/135 (54.81%), Query Frame = 2
Query:   35 ERVRAQRLEQEAAEMRPCTFAPHTNDRVLRAQGPVLVRGLGRHLELKDVAQKRGEERREREAHAFGVRPGAVRRTVLGETVLKPFSLSEGNSRGWWGQRRRRHAEERAAQCPFQPWTVEGERSMAMSRLLECSSV 439
            +++  +R  +E  +++ CTFAP  N  V  ++ PV+VRGLGR LELK++A+++  E+R+REA AF        R     TV  PF L   + R    + RR  A     +C F P T+E      + RL+E S++
Sbjct:  616 QKLNDERQSREFEQLQACTFAPTINRDVKTSKKPVVVRGLGRFLELKELAKRQENEQRQREAKAFTQTKDYKPRAY---TVPAPFHLIS-DERANQRRERRIPAASEVDECTFHPKTLEHANRRLIERLVEHSNL 746          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig10.85.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJD2_ECTSI5.480e-5265.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KJ13_9PHAE2.950e-4774.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2P6V9Q3_9CHLO3.340e-1340.14Uncharacterized protein n=1 Tax=Micractinium condu... [more]
A0A836CJI8_9STRA5.590e-1346.94Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S1XLT3_9STRA5.400e-1242.72Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
W4FFR4_9STRA2.090e-1138.41Uncharacterized protein n=4 Tax=Aphanomyces astaci... [more]
A0A6A4ZSG0_9STRA6.650e-1137.68Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
A0A2P6TS59_CHLSO6.770e-1138.06Uncharacterized protein n=1 Tax=Chlorella sorokini... [more]
A0A7S2W6P4_9STRA3.820e-1040.68Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A6G0WG84_9STRA1.640e-935.56Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig10contigF-serratus_M_contig10:722960..724462 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score174.9
Seed ortholog evalue2.5e-41
Seed eggNOG ortholog2880.D7FJD2
KEGG koko:K18626
Hectar predicted targeting categoryother localisation
EggNOG OGs2CMDY@1,2S3XU@2759
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-14_005900.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Exons2
Model size944
Cds size396
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig10.85.1prot_F-serratus_M_contig10.85.1Fucus serratus malepolypeptideF-serratus_M_contig10 723595..723990 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928785.7288527-UTR-F-serratus_M_contig10:722959..7229991622928785.7288527-UTR-F-serratus_M_contig10:722959..722999Fucus serratus maleUTRF-serratus_M_contig10 722960..722999 +
1690962570.275194-UTR-F-serratus_M_contig10:722959..7229991690962570.275194-UTR-F-serratus_M_contig10:722959..722999Fucus serratus maleUTRF-serratus_M_contig10 722960..722999 +
1622928785.7443688-UTR-F-serratus_M_contig10:723558..7235941622928785.7443688-UTR-F-serratus_M_contig10:723558..723594Fucus serratus maleUTRF-serratus_M_contig10 723559..723594 +
1690962570.2849147-UTR-F-serratus_M_contig10:723558..7235941690962570.2849147-UTR-F-serratus_M_contig10:723558..723594Fucus serratus maleUTRF-serratus_M_contig10 723559..723594 +
1622928785.7806497-UTR-F-serratus_M_contig10:723990..7244621622928785.7806497-UTR-F-serratus_M_contig10:723990..724462Fucus serratus maleUTRF-serratus_M_contig10 723991..724462 +
1690962570.3022547-UTR-F-serratus_M_contig10:723990..7244621690962570.3022547-UTR-F-serratus_M_contig10:723990..724462Fucus serratus maleUTRF-serratus_M_contig10 723991..724462 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928785.7642322-CDS-F-serratus_M_contig10:723594..7239901622928785.7642322-CDS-F-serratus_M_contig10:723594..723990Fucus serratus maleCDSF-serratus_M_contig10 723595..723990 +
1690962570.2927606-CDS-F-serratus_M_contig10:723594..7239901690962570.2927606-CDS-F-serratus_M_contig10:723594..723990Fucus serratus maleCDSF-serratus_M_contig10 723595..723990 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig10.85.1

>prot_F-serratus_M_contig10.85.1 ID=prot_F-serratus_M_contig10.85.1|Name=mRNA_F-serratus_M_contig10.85.1|organism=Fucus serratus male|type=polypeptide|length=132bp
MRPCTFAPHTNDRVLRAQGPVLVRGLGRHLELKDVAQKRGEERREREAHA
FGVRPGAVRRTVLGETVLKPFSLSEGNSRGWWGQRRRRHAEERAAQCPFQ
PWTVEGERSMAMSRLLECSSVLAESVACGES*
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mRNA from alignment at F-serratus_M_contig10:722960..724462+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig10.85.1 ID=mRNA_F-serratus_M_contig10.85.1|Name=mRNA_F-serratus_M_contig10.85.1|organism=Fucus serratus male|type=mRNA|length=1503bp|location=Sequence derived from alignment at F-serratus_M_contig10:722960..724462+ (Fucus serratus male)
CGCTGATTTTCGTGCTCGGGAACACCACCAGGGGGAGAGGGTGAGAAAAA TAGGCGGGCGGGGGCGGGGGCGGGGGAAGACGCGTAACCAAATATCCCTA CAGTTATACGACACGATGGTGAAATCACGCCGTGGGAGTGAAGCGTCATC GACGGCTATGACGAATCACGTCTGGGGTCCTGTTGTGCAGCACTCGGAGT CGTGCTTTTGAGGTGTATGTTGTATGGTCTATTGTGTTGTGTTTGTGGTT TGTTCGTCCATGTTTACAGTTAGGGCTGAAATACTTTGTGACGAGTCAGT TGGAGTCTTGCTTCAAGCCACGGCGGCCGGGAAAAATACAACGTATTCGA CCTCACGAGCGTTCTACGCGCTTGCGCCCGTGTTCGACCATGTCGTGCAT TTTGGTGCAAACATCAGTACATACGGTATAACTGAATGCGTTTATTAATT TTCTTCCCTCCGCTTCAGCCGATATACCCGCCACAAATCCCCCCACCCCG AAGCAGGACGCGCGCATCTATCCTTCAATCCATCGGTGCATCCATCCGTC TATCTATCCATATATCTGCCCTCGTATTAACAAAATAAAATAAAAACAGG TCCGCGCCCAGCGATTGGAGCAAGAAGCGGCGGAGATGCGGCCATGCACA TTCGCGCCGCACACCAACGACCGCGTCCTTCGCGCCCAGGGACCGGTGCT GGTCCGAGGCCTCGGTAGGCACCTGGAGCTGAAGGACGTCGCTCAGAAGC GCGGGGAGGAGCGCCGGGAGCGCGAGGCCCATGCCTTCGGTGTCCGGCCG GGGGCCGTGCGCCGGACGGTGCTCGGAGAGACGGTCCTGAAGCCGTTTTC ACTCAGCGAAGGGAACAGCAGAGGGTGGTGGGGACAGCGTAGGCGGAGGC ACGCCGAGGAGCGCGCGGCGCAGTGCCCGTTCCAGCCGTGGACGGTGGAG GGGGAGAGGAGCATGGCGATGTCGAGGCTGCTGGAGTGCTCGTCGGTGTT GGCGGAGTCGGTGGCATGCGGCGAAAGTTGAAGAGAGACGGGAGGGACGC GAGACTTTTGTTTCGCGCGTTTCTGTGTAGTGCAGGGCAGTCCTAGTGTT CGAACGGAGTTTGAGCTTTTATATTTTCACCAAGAAGATGCTTCTTGCAT TGTTTAACGAAACGTCTGTTTGAATGGGCGTTCGTTGCGTGTTTTTGTTT TATCCGTCGTACGTGCGTAGCTTGTATCGCTACAAAATGGTGCTGCACGC TGTCGTGAGCCCTCCCGTCTTGTGAAGTGCCCACGCTATATGGCTTTGAT ATTTTGTCTGCCAGTGACATTCAACTAGTACTTGGGTGGTGGAAATTTAT GTGGTGGTACATATCGGTACCTCATGGAAGGGATTAATCGTGCCAAACGG TGGCGGGGATGGCACTGCCCTACCTGTATCGGACCCATGTCCGGGCTAAA GACCTCCCCTTCCATTTGATTAACTCAGTAGAAGCGCGATTTTAGTTTGC CAC
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Coding sequence (CDS) from alignment at F-serratus_M_contig10:722960..724462+

>mRNA_F-serratus_M_contig10.85.1 ID=mRNA_F-serratus_M_contig10.85.1|Name=mRNA_F-serratus_M_contig10.85.1|organism=Fucus serratus male|type=CDS|length=792bp|location=Sequence derived from alignment at F-serratus_M_contig10:722960..724462+ (Fucus serratus male)
ATGCGGCCATGCACATTCGCGCCGCACACCAACGACCGCGTCCTTCGCGC
CCAGGGACCGGTGCTGGTCCGAGGCCTCGGTAGGCACCTGGAGCTGAAGG
ACGTCGCTCAGAAGCGCGGGGAGGAGCGCCGGGAGCGCGAGGCCCATGCC
TTCGGTGTCCGGCCGGGGGCCGTGCGCCGGACGGTGCTCGGAGAGACGGT
CCTGAAGCCGTTTTCACTCAGCGAAGGGAACAGCAGAGGGTGGTGGGGAC
AGCGTAGGCGGAGGCACGCCGAGGAGCGCGCGGCGCAGTGCCCGTTCCAG
CCGTGGACGGTGGAGGGGGAGAGGAGCATGGCGATGTCGAGGCTGCTGGA
GTGCTCGTCGGTGTTGGCGGAGTCGGTGGCATGCGGCGAAAGTTGAATGC
GGCCATGCACATTCGCGCCGCACACCAACGACCGCGTCCTTCGCGCCCAG
GGACCGGTGCTGGTCCGAGGCCTCGGTAGGCACCTGGAGCTGAAGGACGT
CGCTCAGAAGCGCGGGGAGGAGCGCCGGGAGCGCGAGGCCCATGCCTTCG
GTGTCCGGCCGGGGGCCGTGCGCCGGACGGTGCTCGGAGAGACGGTCCTG
AAGCCGTTTTCACTCAGCGAAGGGAACAGCAGAGGGTGGTGGGGACAGCG
TAGGCGGAGGCACGCCGAGGAGCGCGCGGCGCAGTGCCCGTTCCAGCCGT
GGACGGTGGAGGGGGAGAGGAGCATGGCGATGTCGAGGCTGCTGGAGTGC
TCGTCGGTGTTGGCGGAGTCGGTGGCATGCGGCGAAAGTTGA
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