mRNA_F-serratus_M_contig10.82.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig10.82.1
Unique NamemRNA_F-serratus_M_contig10.82.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig10.82.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig10contigF-serratus_M_contig10:693783..700090 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size476
Cds size354
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig10.82.1prot_F-serratus_M_contig10.82.1Fucus serratus malepolypeptideF-serratus_M_contig10 693903..700090 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928780.8344164-UTR-F-serratus_M_contig10:693782..6939021622928780.8344164-UTR-F-serratus_M_contig10:693782..693902Fucus serratus maleUTRF-serratus_M_contig10 693783..693902 +
1690962567.4088564-UTR-F-serratus_M_contig10:693782..6939021690962567.4088564-UTR-F-serratus_M_contig10:693782..693902Fucus serratus maleUTRF-serratus_M_contig10 693783..693902 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928780.8548567-CDS-F-serratus_M_contig10:693902..6940381622928780.8548567-CDS-F-serratus_M_contig10:693902..694038Fucus serratus maleCDSF-serratus_M_contig10 693903..694038 +
1690962567.4174623-CDS-F-serratus_M_contig10:693902..6940381690962567.4174623-CDS-F-serratus_M_contig10:693902..694038Fucus serratus maleCDSF-serratus_M_contig10 693903..694038 +
1622928780.8834627-CDS-F-serratus_M_contig10:699872..7000901622928780.8834627-CDS-F-serratus_M_contig10:699872..700090Fucus serratus maleCDSF-serratus_M_contig10 699873..700090 +
1690962567.4269245-CDS-F-serratus_M_contig10:699872..7000901690962567.4269245-CDS-F-serratus_M_contig10:699872..700090Fucus serratus maleCDSF-serratus_M_contig10 699873..700090 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig10.82.1

>prot_F-serratus_M_contig10.82.1 ID=prot_F-serratus_M_contig10.82.1|Name=mRNA_F-serratus_M_contig10.82.1|organism=Fucus serratus male|type=polypeptide|length=118bp
MSLAQPVVRAVMTESLEDILGGVEAEIRRAEERLRLDEPRPKRCTEAQAR
SSIGQLDCLAARLPTIEANWVEGRVASREAAIGRRLQDALLPERRTGRET
RPHRRRAWVDLEKDCPNV
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mRNA from alignment at F-serratus_M_contig10:693783..700090+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig10.82.1 ID=mRNA_F-serratus_M_contig10.82.1|Name=mRNA_F-serratus_M_contig10.82.1|organism=Fucus serratus male|type=mRNA|length=6308bp|location=Sequence derived from alignment at F-serratus_M_contig10:693783..700090+ (Fucus serratus male)
AAACCAACCAGGAGGCCTAGTATCGCAGGGTCTAAGCAATAATATCTTCC
GCGCAACCTCCTAAAACGCCTAGCTTTGGTGGAAAAGCGCGCAGTCGTTG
CAGCTGGATCTTGTTTTGTTATGTCGTTGGCGCAACCTGTAGTCAGAGCT
GTGATGACCGAGAGCCTCGAAGACATCCTCGGAGGAGTCGAGGCAGAGAT
CCGACGAGCTGAAGAGCGACTTCGACTGGATGAACCCAGGCCGAAGCGGT
GTACAGGCGAGCTCCAATCCCAGCTATTATTAACGGCATCGTTAGAGGAA
TATAGTGTGATACTGAAGTTTTTAAGCGAGTTGACACTATAGGGCAGTCT
TTCGCAGAAGGTCCCGCTGCGCCACTCTACCAGCTTCGATTTACCGTGTG
AAGATATTGTACGGTACCAGTATGTAATATTAATACTGTACCACCACCAA
CAGACTGGACGTCTATACTAATAATATCAATGATAAGACGGGCTGGGGCC
GACGGGCTGTACCGTGCGGTATTCTGAAATTCGAAGACGTTCTTCTTATA
TCAGCGTCGACGGTGGTAGGAATGTGTGTCCGGATCCGAATCTCGCTGGG
CTTGCTGGTAGCTTATTTTTCTCGTTGTATTAATCGCCGGTCGCCCCGTT
GGTCCAGTTGGTAACCTCTAAACTTCTGAAGTTGGGACACGAGTTCGAAT
CTCGGTGTCGTCACACGAACTGGAATTTTTCCTCAAAAAAGATGCCCAAC
AAGTGGAGAACAATTAAATTGTTAGTACACAAAATTCGACTTCACGGTCG
ACGACGGAAAGAATGGCTGAATCCTTCTCGCGAGAAAATTAAGGCAAGCA
CCGCAGAAAGAAGTCTCCTGTGTGACCTTCCTCCTGCGTAACCTCGGCTG
GTACGTCCACAAACCTAACGTCCACAATAAATGGGATGACAACACACAAC
ACACACACATTGCTCAAGTGAATACAGGTAGGAGGAAACGGCGATATTGT
GAGCGTAGCCCGCTTAATTGGTTTGAGTGAATTCTCACATAAGCTGATGT
CATAAATCCAGCTCATGGTCACAAGGTAGAAAAACACAATTCGGAAGGAA
AGAACGTACGACGTACTTTCCATACAAAGAGAAAGCGAAAATAGTACAAA
AAATACTCGGAAAAAGCGACATCTGTATCTTTAAATAAACAAAAAGGAAA
AAGAAAGAAACATATGTGGCTACAGGTATCGGAGCGCCTGCATATCGAAG
GACGATTGAACGAAGGGCCACGGGTCCAACGAAAGCATACAGACAAAAAC
GAAGCAAAACAAAACAAACATAATACCAGAGAAAGACGCCATGACATCTG
CAAACCAAACGCCCGGAGGATACAAGTTCGCGCCACTTGTGGCTATTCAA
CAAGAGCGAGCGAACCAGCACGAACCCGCTTGCTTTGGGCTATCCTTTCC
TTGGTCCTTCCTGTCACGTTCGGGCATACCACTGTATGCCGTAGTCCAGT
CTTGGCTTTCTCTGCAACGATCAATTTCGCCATGAAATGTTTCGCCCCTT
GTTATGTCGTTCTGCGCCATTCCCCCTTGTCCTGAGCTGCAGTCGTCCAC
TGGTCGGCGTTGGTACCGAAAGCTCTGAGATCGTACAGGAAACACCCCAT
CCACTCTTTTTCATGGTCCCCCACACAGCCCGCGCCCCCCACCATTTCTC
CGAACATCACGCACTTCGGCAATCTCGTATCCTCCATGCGCGCCACAAAT
CCCGCAAACAAGATCCGTCTCCTGCGTAAAGTCGCATCGATGCCCTCCTT
TGCCGTCTTGATCAGCGTGTCCAGATAGGAAATCGGGTGGTCGGCGCGAT
TGTGCTTTCGCCAACCGATACAGCGAGTCAAGAACCTGTGATGGGCTCGG
TGCAGCGTGTCGTAGTGGCACGCGCGCGGACTCCACGTGACGCAGCCGTA
CAGCATTGTATCGAGTACCTCGGCTCTTAGCATCCGGGTTATGAGCTCGA
GGGGAGCGCTCGGTCGGTCGTACAGTTCAAGGGTGTACTTTCGGAAGCTG
CACCATGCGTTGCGTATGCGTCGGTCGACCTCGATGGACAGGTTGGCATT
GCAGTTGACGTGTCCCTCGAGGTATACAAACTCGTTCATCTGGTTGTACA
TCTGGCCCGCTTCCTCTACGCTGAATGTGGCGGTGGACTCCAGCATCCCC
TTCGCCCGTAAGCACATGATCTCAGTTTTGGCCTCCGATACGGCGAGGCC
AAACACCGCGCACACGACCACGATCACCTCCATCATATTCCTCAGCTGCT
TGGGTGATTGCGAGACGACCCCGGCATCGTCAGCATAAAACATACCCCAA
AGCGGCGTCGCGAGGACTGACTTTCCGGCAGTTGCTTCCCCCCGCCCCCC
CGCCCCCCTTTTCTTCCTCAGGTGTACCAAAGCGTCCATGGTTCCTTTGT
CCACCTTGAAACGCGCGGAGGTCACGTTTATAACCGCCGCGAAGAAGATG
TTGAACAAGAGGGGGGTGAACACGCATACTTGACGAAGGCCTTTTTCCAC
AGCAAACCACCTCGAGCAAACCCTGTCGTCGACTCGCACGCATGCTTGAA
TGCCATCGTGGAATTGACGAATGGCCGAGATCATTTTCTCTGGCACGCCA
AAACGGGCGAGTTCTGTCCAAAGGATGGTTCAATCAACGGAGTCGTACGC
TTTGGTATTCAGCATGGGTGTGGAGAGAGAACGGGCTGGCGCGGGTGAAC
CTTTCTCGTAAGATCCGATTATTCCTAGCCCCGAACGAGGACAAAATAAT
TTCATTTTCCGTGTTCAACTGATTATAAACAATATTGGTAACCAAATTGG
CAACCAGATACATACGGTTGATGCCCAATCTGTTCTAAAGGATGATCACA
TAATAAGCGAACATAAACACACAAATACACACGCGCACGCCGTTACTTTC
AACATACTATAACCACTTGACTTCATACTAATAGTGGGTGTGCGAAGAGG
TGCATATTAATCGGTCTATGGTGACCTGCCAAGGCAGCAATCGTTCGGAA
CTACCTTGAGGTTTACTGGCCTTGTACCGACGGACTCTCGGCAATGAGCG
CCATCGGTACGCAATTGCGTGACCCGATAAACTCAGGACTGGTCCTAAGG
CGTATGGTGGTTTTATATAAATTAATGGACGTCGCCGCGGAACTCGGGAG
GAATCCCGTAAGTGAGCACCAGATTCAGCCTGAGTATGGAGATGAGCAGG
CTGACGAGGGACGGGACTGCCGAACCCGTCTCGCGAGACCAAATTCTCAG
GCGCGAACGGGGACAGGGGGATATTCTTTTTCCCTGTTCAACTGACCACG
AGCAGGATTGGCAACCTTATCAGGTTGATCCATACTCTTGCTATAGACTA
TGTGTGACCATACCTCCTTGGGAAGATCAATGCGAGTACAGTAGCATATA
ATGGCTAGGATAACAGGACTGGCGGACAGAGAAAACAAAATGTAGACAAG
AAAGGTTTGGTTCAGTAGCTGCCAACCCAGATATTCTAGAGAATAGCAAG
AAACCAGGAAGGGAAGCACGATACAGTCAGGGCTCTAAGTGAGAACTGTA
CAAGTACTGTAGAGGGAGTGCGTCCCTTTTGTCGCGTCTGATGATTAATA
GAGGTTTTCGCAATAAGTATAAGTGACTCCCTCTTTGGAAGATCTATGCG
AGTGGCATAGAATGACTAGGATAACAGGATCGGATCGCTCGTCAATGTAC
AATTTAATAATACACACACACACGACAAGTAGCATAGAATGACTATAATA
GGATGACAGGGCCGGATTTTGCGTGGTTATGCGCAATTTAATAAAAATTA
ATACACACACACACACACACACACACACACACACACACACACACACACAC
ACACGATCCCCCCTCGGGAGGATCAATGCGAGTGGCATAGGATGAATAGG
ATGACAGAGCCGGATTGCGCGGTTATGTGCAATTTAGTAAATACACACAC
ACACACACACACACCAGCGAGACCGTCGCATGATGCTGAGGACCAGAGCC
AAGAGACGAGAGGCGAAGGACAGAAACGGAGACGACGGAGGAGAGGCGAA
GAAGTGCAAGAAACCCCACACGAGTTGTAGACGCGATGTGGGAAACGGGG
GAGACTTGTACTAAAAGAGAAAAAAACGTCGACAACAAAATGTTGTTCAG
TAGCTTCCGACGTAGAAAATCTAAAGAATAGCAAGGAAGCAGGGAAATAA
GCGCAAGGCACTCAGGGCTTAAGGAAGAGCTATACAAGTAGAGAGTGTGT
CCCTTCTGTTGCGTCTGATCAGAGGTTTTCGTAATAAGTATAATTGATCC
CTTAGTTCCCCTTGGGAGGACCAATGCGAGAGGCATATAATGACAAGGAT
AACAGGGCCGGGTTGCGCGGTTATACGCAATTTAACAAATCCACGCACAC
ACGCACACTTCTGCGAGTGGCATATAATAACTAGGATGACAGAGCCGGAT
TGCGCAATTATGTGCAATTTAATAAGTAAACACAAACACACACGGTCTCC
CCTCGGAAGCATCAATGCGAGTGGCATAGAATGACTAGGATGGCAGGGCC
GGATTGCGCGGTTATGTGCAATTTAATAAATACACACATACAAACACACA
CACACACACACACACCCTCGGGAGGATCAATGCGAGTGGCATAGAATGAC
TAGGATGACAGGGCCGGATTGCGCGGTTATGTGCAATTAATAAATACACA
CACACACACACATAAGTATCACACGGGAGGATCAACCGAGTGGCATAGAA
TGACTAGGATGACAGGGCCGGATTGCGTGGTTATGTGCAATTTAAATAAA
CACACACACACACACCCTCGGGAGGATCAATGCGAGTGGCATAGAATGAC
TAGGATGACAGGGCCGGATTGCGTGGTTATGTGCAATTAATAAATACACA
CACACACACACACACACACAGTGGCATAGAATGACTAGGATGACAGGGTC
GGATTGCGTGGTTATGTGCAATTTAATAAATACACACACACACACCACCA
TATGAAAGTCAAAGGCATAATTCTCAAATTGGCATCGACGGTAGGACTGT
GTCCGAATCTCGCTGATGTATGATAGCGTCTTTTAGTCGCCGTATTCGTG
GAGAGAAAATCAGCAGGAGATGACGTCATAACTAGCCGGCTCGGGCACCC
GATAGACAAGTTTATGGGTGGAGAGTATTACAAGAACCTTGATTGTCACT
TGAATTTTACCCAGTGGGGACGGTTGTGTATTGTTCATTGCATGTCCCTA
CGAACTTTTCGACACAAGCGTTGTACGTACTGCCGAGATCGAAGTACTGA
CTTTCAGTTACAAAGAAAGAGTAGTACCTATTGCAAAGAAACACGAAAAG
TTGAGATGGTGGTTGGTTGTTCCCTAAGAAAGATTGGTGCGTTGCTACGT
TGATGCCCGTGTGGGTATCTTTCTAGTTTTTGCCTAAATCCCTTATTCGG
ATTGCACGACAGAACCATGCTACCTCACTTTTCTTTCAAGCAGCTAGTTG
TTGAATCGGGCAGCGTGCTCGGCACACGCGAATTCGCCACTGACGTCTCT
GATCCTAGACTTAGACTTAGACTCCCCGTGGTTCGCTGGTAACTCGTTCT
TGGCGCCCTGCCGACATATGCTCTTGGAAAAATGATGAATGATACCACCG
CAGAACGAGGATTCGAGCCTCACAAAACATCACGCTTACATGAAATAATC
ATCCCTCCGGTGCAGCAGTAGCAGCAGCAAAGTAATATTATATGCAGGTA
TTTGTACTTGTAACAGACCACGAGGTTACAAGGCGGACACGTAAAATATA
TATATATACTACACTCTGTACTATCCGCCCTCTGCGCACAGAGTAGTAGC
GCTATAATACTACTCGAGACTTCCTTGGTCGACGCCCCACAACCAGGTAT
ACATACTTTTGTTCTTCTTTTTTACATTATTATTGCTAGCTCTATGTGTC
GAGAGTTGTCCCCTAAGATTCGACTGACTCTTCATTACGTCACACGTCGA
TGTCGACGTTGATGCCAATATTTGCCTACTGTACATGCAGAGGCCCAAGC
GAGATCGTCCATCGGACAGCTCGATTGCCTCGCCGCTCGATTGCCAACAA
TCGAGGCGAATTGGGTCGAAGGAAGAGTAGCTTCTCGAGAGGCCGCTATC
GGCAGGCGTCTCCAAGACGCGCTTCTGCCGGAGCGACGTACTGGCAGGGA
GACGAGGCCGCATCGACGCCGGGCATGGGTAGATCTGGAGAAAGATTGCC
CCAACGTA
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Coding sequence (CDS) from alignment at F-serratus_M_contig10:693783..700090+

>mRNA_F-serratus_M_contig10.82.1 ID=mRNA_F-serratus_M_contig10.82.1|Name=mRNA_F-serratus_M_contig10.82.1|organism=Fucus serratus male|type=CDS|length=708bp|location=Sequence derived from alignment at F-serratus_M_contig10:693783..700090+ (Fucus serratus male)
ATGTCGTTGGCGCAACCTGTAGTCAGAGCTGTGATGACCGAGAGCCTCGA
AGACATCCTCGGAGGAGTCGAGGCAGAGATCCGACGAGCTGAAGAGCGAC
TTCGACTGGATGAACCCAGGCCGAAGCGGTGTACAGATGTCGTTGGCGCA
ACCTGTAGTCAGAGCTGTGATGACCGAGAGCCTCGAAGACATCCTCGGAG
GAGTCGAGGCAGAGATCCGACGAGCTGAAGAGCGACTTCGACTGGATGAA
CCCAGGCCGAAGCGGTGTACAGAGGCCCAAGCGAGATCGTCCATCGGACA
GCTCGATTGCCTCGCCGCTCGATTGCCAACAATCGAGGCGAATTGGGTCG
AAGGAAGAGTAGCTTCTCGAGAGGCCGCTATCGGCAGGCGTCTCCAAGAC
GCGCTTCTGCCGGAGCGACGTACTGGCAGGGAGACGAGGCCGCATCGACG
CCGGGCATGGGTAGATCTGGAGAAAGATTGCCCCAACGTAAGGCCCAAGC
GAGATCGTCCATCGGACAGCTCGATTGCCTCGCCGCTCGATTGCCAACAA
TCGAGGCGAATTGGGTCGAAGGAAGAGTAGCTTCTCGAGAGGCCGCTATC
GGCAGGCGTCTCCAAGACGCGCTTCTGCCGGAGCGACGTACTGGCAGGGA
GACGAGGCCGCATCGACGCCGGGCATGGGTAGATCTGGAGAAAGATTGCC
CCAACGTA
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