mRNA_F-serratus_M_contig10.66.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig10.66.1
Unique NamemRNA_F-serratus_M_contig10.66.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig10.66.1 vs. uniprot
Match: A0A7S3NGH6_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NGH6_9STRA)

HSP 1 Score: 454 bits (1168), Expect = 7.460e-148
Identity = 247/555 (44.50%), Postives = 317/555 (57.12%), Query Frame = 3 
Query:  321 GGQIMIHNPKAEHFRAPVQGPAHPHKRELPVPAGGRATGTGGVIEQTSLEDWSFHEQYHTFHQFGYAVDCRGDTVGNLAEHGKRQGDTVLTADAGGVRRKRKKSGGDGANEGGDVGDGKEDADRDLGETDTDSVWAPEAPREKTDFEAGRMTEEQSKFREAWEAEQAKKHREYNMEEDHDRRDERKISHLLPPRHNRDTESKKARSTFHGKAQHDYQGRSWMAPPAGARLEEEGEDHQCFTPKKCIHRYAGHTKGVQAISFFPGYGHLLLSASMDGTVKIWDVNGGRGQRRTYIGHTAAVRDVQFSNDGKQFISAGYDRFVRQWDTETGQCLGTFT-NRKMPYCAKFYPVDNNIFLCGCSDNRVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQ------------RFVSTSDDKKVLIWEYNIPVPIKYISEPDMHSMPATTLHPSGGFFVGQSLDNKIVTWTARDKFRQMRKKEFKGHVNAGYACRMAFSPNGKFLASGDGQGKMYIWDWGSTKVYRKHQCHDDGPCIDIAWHPLEPSWVATAGWDGIIKLW 1946
            G  IM  N  A    AP  GP +P+KR     A   A   GG +++  +E+W F E+Y+++   G       D    L +  KR             R KR +                   + DLG  D D +WAPE   E        M E + +           K  + N  +  DRRDERKISHLLPPRH+  T + +AR+ FH +   DY+G SW  PP+G R + + + H CF PKK +H + GH KGVQ I  FP  GHLLLSAS+DGT KIWDV   R   RTYIGH+ A RDV F+++G +F S+G+DRF+R WDTE+G CL T T NRKM YC  FYP D+NI L G SDN++                              +            RFVST DDKKV +WE+NIPVPIKYISEP MH++P   LHPS  F+ GQSLDN IVT+ ARD  +Q+ K++FKGH+ +GYAC + FSPNG++LASGD +G+++IWD+ +T+V RK  CHD GPCI  AWHP+EPSW+ TAGWD +IKLW
Sbjct:   55 GTSIMRRNLPAASVLAPRVGPENPYKR---TDAKSSAVFIGGSVDRAVIEEWGFDEEYYSYQSRGMEAGGGEDIEKPLNK--KR-------------RSKRTRE------------------EEDLGNEDVDGIWAPEKNDEDLIVRKDAMQEHEQR-----------KEIKINYNQYLDRRDERKISHLLPPRHDNATRAIEARTEFHAERTVDYRGHSWFEPPSGLRRKID-DGHDCFLPKKKLHTFTGHKKGVQTIRLFPKTGHLLLSASLDGTCKIWDVYQNRIAMRTYIGHSEAARDVNFNHNGTKFGSSGFDRFIRIWDTESGSCLHTLTPNRKMCYCLVFYPRDDNILLAGASDNKIYQWDLRAPANQQSKTSEGDAQIIQEYNYHLKPVNSVTYIDDDARFVSTGDDKKVFVWEHNIPVPIKYISEPGMHAIPVVQLHPSTNFWCGQSLDNSIVTFQARDNVKQLHKRKFKGHLCSGYACGLTFSPNGRYLASGDAEGRLFIWDFKTTRVVRKTHCHDAGPCIATAWHPIEPSWIFTAGWDNLIKLW 561
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BLAST of mRNA_F-serratus_M_contig10.66.1 vs. uniprot
Match: A0A3R7FYG3_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7FYG3_9STRA)

HSP 1 Score: 450 bits (1157), Expect = 2.390e-147
Identity = 220/426 (51.64%), Postives = 287/426 (67.37%), Query Frame = 3 
Query:  693 DLGETDTDSVWAP--EAPREKTDFEAGRMTEEQSKFREAWEAEQAKKHR-----EYNMEEDHDRRDERKISHLLPPRHNRDTESKKARSTFHGKAQHDYQGRSWMAPPAGARLEEEGEDHQCFTPKKCIHRYAGHTKGVQAISFFPGYGHLLLSASMDGTVKIWDVNGGRGQRRTYIGHTAAVRDVQFSNDGKQFISAGYDRFVRQWDTETGQCLGTFTNRKMPYCAKFYPVDNNIFLCGCSDNRVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQRFVSTSDDKKVLIWEYNIPVPIKYISEPDMHSMPATTLHPSGGFFVGQSLDNKIVTWTARDKFRQMRKKEFKGHVNAGYACRMAFSPNGKFLASGDGQGKMYIWDWGSTKVYRKHQCHDDGPCIDIAWHPLEPSWVATAGWDGIIKLWD 1949
            D G+   DS+WAP  E  +  +D E G ++E+Q   RE  E ++AK+ +     + + E D DR  E+K  HLLP R     ++ + +STF G  ++DYQGR+W+  P    L+ +  DHQ F PKKC+H++ GHTKGVQAI  FP YGHLLLS SMD TV+IWDV   R  +R Y GH+ AVR + FSNDG+QF+S  +DRF++ WDTETGQ + +FT R++PYC KFYP+DN  F+ G S+N VV                             +RFVSTSDDKK+L+WE+ IPVP+KYISEP MHSMPA TLHPSGGFF GQSL+N+I  ++ARDKF+  RKK FKGH NAGYAC++ FSPNG+++ SGDG+G++  WDW STK+ +K + HD GP +   WHPLEPS V + GWDG+IK WD
Sbjct:   61 DFGDEAKDSIWAPYKEKGKHLSDAELGTLSEQQKVLRE--EHQEAKRRKAEAKEQVDEEMDFDRMVEKKTGHLLPARLKAGQKALEGKSTFLGDQEYDYQGRAWVEHPR--TLKPDDGDHQVFLPKKCVHKWTGHTKGVQAIELFPKYGHLLLSGSMDNTVRIWDVYNERKCQRVYEGHSGAVRSINFSNDGRQFLSCSFDRFIQLWDTETGQIVNSFTTRRVPYCVKFYPLDNTNFVVGDSNNMVVQFDARSGEIVQEYNHHLQAVNSVTFVDDNKRFVSTSDDKKILVWEWGIPVPVKYISEPSMHSMPAVTLHPSGGFFAGQSLNNQIDVYSARDKFKINRKKVFKGHANAGYACQIGFSPNGQYVMSGDGEGRLVFWDWKSTKLVKKLRAHDRGPTMGAVWHPLEPSKVVSCGWDGLIKYWD 482
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BLAST of mRNA_F-serratus_M_contig10.66.1 vs. uniprot
Match: A0A0P1B6D4_PLAHL (mRNA splicing factor n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B6D4_PLAHL)

HSP 1 Score: 451 bits (1160), Expect = 4.180e-146
Identity = 266/610 (43.61%), Postives = 348/610 (57.05%), Query Frame = 3 
Query:  165 APARKQTITS-FRAPRVNAAPHVVASRAMDQASSSLMAPPTGMLGLKNSTPKVGGQIMIHNPKAEHFRAPVQGPAHPHKREL----PVPAGGRATGTGGVIEQTSLEDWSFHEQYHTFHQFGYAVDCRGDTVGNLAEHGKRQG----DTVLTADAGGVRRKRKKSGGDGANEGGDVGDGKEDADRDLGETDTDSVWAPEAPREK----TDFEAGRMTEEQSKFREAWEAEQAKKHREYNMEE--DHDRRDERKISHLLPPRHNRDTESKKARSTFHGKAQHDYQGRSWMAPPAGARLEEEGEDHQCFTPKKCIHRYAGHTKGVQAISFFPGYGHLLLSASMDGTVKIWDVNGGRGQRRTYIGHTAAVRDVQFSNDGKQFISAGYDRFVRQWDTETGQCLGTFTNRKMPYCAKFYPVDNNIFLCGCSDNRVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQRFVSTSDDKKVLIWEYNIPVPIKYISEPDMHSMPATTLHPSGGFFVGQSLDNKIVTWTARDKFRQMRKKEFKGHVNAGYACRMAFSPNGKFLASGDGQGKMYIWDWGSTKVYRKHQCHDDGPCIDIAWHPLEPSWVATAGWDGIIKLWD 1949
            AP+ + T TS    P VN+AP V  + + +Q +       T  +   + T     Q+ ++ P  +   AP  GP   +   L    P+  G       GV+E   +ED++F  QYHT +Q       R    G         G    DT++ +    V  +R       A               ++G+ +   VWAP   +EK    TD E G M E+Q   +E  E ++ K   +  M+E  D DR  E+K+SHLLP R      + + +STF G  ++DYQGR+W+ PP    L+ +  DHQ F PKKCIH++ GHTKGVQAI  FP YGHLLLS SMD TV+IWDV   R  +R Y GH+ AVR + FS DGKQF+S  +DRF++ WDTETGQ + +FT R++PYC KFYPVDN  F+ G S++ VV                              RFVS+SDDKKVL+WE+ IPVPIKYISEP MHSMPA TLHPSG FF GQSL+N+I  +TARDKF+  RKK F+GH NAGYAC++ FSPNG+++ SGDG+GK+  WDW STK  +K + HD GP +   WHPLE S V T GWDG+IK WD
Sbjct:   15 APSPRSTDTSNLSLPFVNSAPFVAITDSEEQRNK------TAFMIAASQT-----QLTVNLP-IDTTLAPFVGPHGGNSTNLALMNPLRVGSGKEIVTGVVEHAEMEDYTFEAQYHTHNQTISQNPSRHRVKGAPPPPPTLPGEIIPDTIVASGEEDVFTRRN------AKRKNQTSLKARALAENVGDENVTGVWAPY--KEKGIFLTDAEKGTMNEQQKMLQEEHEVKRRKTEGKTEMDEEMDFDRMVEKKLSHLLPARLKAGQTALEGKSTFLGDNEYDYQGRAWVEPPR--TLKPDDGDHQVFLPKKCIHKWMGHTKGVQAIELFPKYGHLLLSGSMDNTVRIWDVYNERKCQRIYEGHSGAVRGINFSTDGKQFLSCSFDRFIQLWDTETGQAVHSFTTRRVPYCVKFYPVDNTQFVVGDSNHMVVQFDTRSGEIVQEYNHHLQAVNSVTFVDDNTRFVSSSDDKKVLVWEWGIPVPIKYISEPSMHSMPAVTLHPSGAFFAGQSLNNQIDVYTARDKFKLNRKKVFRGHQNAGYACQIGFSPNGQYIMSGDGEGKLVFWDWKSTKQLKKLRAHDRGPTMGAIWHPLESSKVVTCGWDGLIKYWD 602
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BLAST of mRNA_F-serratus_M_contig10.66.1 vs. uniprot
Match: A0A2P4X2Y8_9STRA (Pre-mRNA splicing factor (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4X2Y8_9STRA)

HSP 1 Score: 442 bits (1137), Expect = 5.160e-146
Identity = 208/372 (55.91%), Postives = 258/372 (69.35%), Query Frame = 3 
Query:  834 EYNMEEDHDRRDERKISHLLPPRHNRDTESKKARSTFHGKAQHDYQGRSWMAPPAGARLEEEGEDHQCFTPKKCIHRYAGHTKGVQAISFFPGYGHLLLSASMDGTVKIWDVNGGRGQRRTYIGHTAAVRDVQFSNDGKQFISAGYDRFVRQWDTETGQCLGTFTNRKMPYCAKFYPVDNNIFLCGCSDNRVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQRFVSTSDDKKVLIWEYNIPVPIKYISEPDMHSMPATTLHPSGGFFVGQSLDNKIVTWTARDKFRQMRKKEFKGHVNAGYACRMAFSPNGKFLASGDGQGKMYIWDWGSTKVYRKHQCHDDGPCIDIAWHPLEPSWVATAGWDGIIKLWD 1949
            E + E D DR  E+K  HLLP R     ++ + +STF G  ++DYQGR+W+ PP    L+ +  DHQ F PKKC+H++ GHTKGVQ I  FP YGHLLLS SMD TV+IWDV   R  +R Y GH+ AVR + FSNDGKQF+S G+DRF++ WDTETGQ + +FT R++PYC KFYP+DN  F+ G S+N VV                             +RFVSTSDDKK+L+WE+ IPVPIKYISEP MHSMPA TLHPSGGFF GQS++N I  +TARDKF+  RKK F+GH NAGYAC++ FSPNG+F+ SGDG+GK+  WDW STK+ +K + HD GP +   WHPLEPS V T GWDG+IK WD
Sbjct:    1 EMDEEMDFDRMVEKKTGHLLPARLKAGQKALEGKSTFMGDQEYDYQGRAWVEPPR--TLKPDDGDHQVFLPKKCVHKWTGHTKGVQTIELFPKYGHLLLSGSMDNTVRIWDVYNERKCQRVYEGHSGAVRAINFSNDGKQFLSCGFDRFIQLWDTETGQAVNSFTTRRVPYCVKFYPMDNTQFVVGDSNNMVVQFDTRSGEIVQEYNHHLQAVNSVTFVDDNKRFVSTSDDKKLLVWEWGIPVPIKYISEPSMHSMPAVTLHPSGGFFAGQSMNNHIDVYTARDKFKINRKKVFRGHQNAGYACQIGFSPNGQFIMSGDGEGKLVFWDWKSTKLIKKLRAHDRGPTMGAIWHPLEPSKVVTCGWDGLIKYWD 370
[Close]
BLAST of mRNA_F-serratus_M_contig10.66.1 vs. uniprot
Match: A0A7R9YFU6_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YFU6_9STRA)

HSP 1 Score: 444 bits (1143), Expect = 1.970e-143
Identity = 277/634 (43.69%), Postives = 369/634 (58.20%), Query Frame = 3 
Query:   96 MNLLAGYGSGDENSSDEGGARSAAP----ARKQTITSFRAPRVNAAPHVVASRAMDQASSSLMAPPTG-----MLGLKNSTPKVGGQIMIHNPKAEHFRAPVQGPAHPHKRELPVPAGG-RATGTGGVIEQTSLEDWSFHEQYHTFHQFGYAVDCRGDTVGNLAEHGKRQGDTVLTADAGGVRRKRKKSGGDGANEGGDVGDGKEDADRDLGETDTDSV--WAPEAPREKTDFEAGRMTEEQSKFREAWEAEQAKKHREYNMEEDHDRRDERKISHLLPPRHNRDTESKKARSTFHGKAQHDYQGRSWMAPPAGARLEEEGEDHQCFTPKKCIHRYAGHTKGVQAISFFPGYGHLLLSASMDGTVKIWDVNGGRGQRRTYIGHTAAVRDVQFSNDGKQFISAGYDRFVRQWDTETGQCLGTFTNRKMPYCAKFYPVDNNIFLCGCSDNRVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQRFVSTSDDKKVLIWEYNIPVPIKYISEPDMHSMPATTLHPSGGFFVGQSLDNKIVTWTARDKFRQMRKKEFKGHVNAGYACRMAFSPNGKFLASGDGQGKMYIWDWGSTKVYRKHQCHDD----GPCIDIAWHPLEPSWVATAGWDGIIKLWD 1949
            M  L  YGS D++S +E   + +A     AR     + R P V++A + +  R     S +L A  +        G++  +  + GQ   + P A    AP  GP HP K+E  V   G     TG V+E   +E++ F  Q+++F+  G+A+D  G   G+     KR       A       K+KK   + A +G  +     +AD      D  S+  WA EA  E         T E+     A EA + +  R    EED+D   ERK   LLPPRHNR T++   +S FHG  + DYQGRSW  PP G R + EGE H C+ PKK +H + GHTKGV  I + P YGHLLLS SMDGT KIWDV   R   RTY GH+  ++D+ FS DG +F++  +DRF+R WD ETGQC+ TFTNRKM Y  + +P D + FL  CS     XXXXXXXXXXXXX                +RF+STSDDKK+L+WE+ +PVP+KYI+EP+MH++ +T LHPSG F+VGQS+DN IV + A  KF+ + +K FKG VNAGY+  ++FSPNGKFLASGDG+G+M  +D+ S+K  ++ + HD     G C+D  WHPLEPSWVA+AGWDG IKLWD
Sbjct:    1 MQALLEYGSADDDSEEEEPVKQSAAVGALARPSRAVNTR-PAVDSASYALQRRRAGDYSVALRASASSEASDAKAGVQALSAVLMGQSKRNLPSAL-MSAPTAGPRHPFKKERAVEVNGVENMATGAVLEPAVVENYDFEGQFNSFNNQGFAIDAYGHLQGDATAVAKRPRPEQGVA-------KKKKRRPERAADGSLLPPALAEAD------DPTSLGPWAQEAEGEDVVAVRAEATSEEQ----AGEAVEPQPGR--TAEEDYDAMVERKRGGLLPPRHNRHTQAAAPQSVFHGDNERDYQGRSWTTPPTGLRADPEGE-HPCYLPKKIVHTWTGHTKGVNKIRWLPQYGHLLLSCSMDGTAKIWDVYNDRRCMRTYSGHSLGIKDIDFSPDGTKFLTTSFDRFIRLWDVETGQCVSTFTNRKMAYTVRIHPEDTHNFLAACSXXXXXXXXXXXXXXXXXXDYHLEAVNSVCYVDGNKRFISTSDDKKILVWEWGLPVPMKYINEPNMHAIHSTCLHPSGSFWVGQSMDNSIVVYQATPKFKAVGRKSFKGLVNAGYSIGLSFSPNGKFLASGDGEGRMMFYDFRSSKNVKRIRAHDGSADRGVCMDAQWHPLEPSWVASAGWDGRIKLWD 612
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig10.66.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3NGH6_9STRA7.460e-14844.50Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A3R7FYG3_9STRA2.390e-14751.64Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
A0A0P1B6D4_PLAHL4.180e-14643.61mRNA splicing factor n=1 Tax=Plasmopara halstedii ... [more]
A0A2P4X2Y8_9STRA5.160e-14655.91Pre-mRNA splicing factor (Fragment) n=1 Tax=Phytop... [more]
A0A7R9YFU6_9STRA1.970e-14343.69Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig10contigF-serratus_M_contig10:418543..421925 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score1015.8
Seed ortholog evalue8.8e-294
Seed eggNOG ortholog2880.D7G098
Preferred nameCDC40
KEGG koko:K12816
KEGG Pathwayko03040,map03040
KEGG ModuleM00355
Hectar predicted targeting categoryother localisation
GOsGO:0000245,GO:0000348,GO:0000350,GO:0000375,GO:0000377,GO:0000389,GO:0000393,GO:0000398,GO:0000974,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0006139,GO:0006376,GO:0006396,GO:0006397,GO:0006403,GO:0006405,GO:0006406,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0015031,GO:0015833,GO:0015931,GO:0016043,GO:0016070,GO:0016071,GO:0022607,GO:0022613,GO:0022618,GO:0031123,GO:0031124,GO:0031503,GO:0031974,GO:0031981,GO:0032991,GO:0033036,GO:0034399,GO:0034613,GO:0034622,GO:0034641,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045184,GO:0045292,GO:0046483,GO:0046907,GO:0050657,GO:0050658,GO:0051028,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051641,GO:0051649,GO:0065003,GO:0070013,GO:0070727,GO:0071007,GO:0071013,GO:0071014,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1902494,GO:1990904
EggNOG free text desc.mRNA splicing, via spliceosome
EggNOG OGsKOG0282@1,KOG0282@2759
Ec32 ortholog descriptionWD40 repeat
Ec32 orthologEc-14_005040.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041
Exons4
Model size2392
Cds size1857
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig10.66.1prot_F-serratus_M_contig10.66.1Fucus serratus malepolypeptideF-serratus_M_contig10 418638..421460 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928783.118992-UTR-F-serratus_M_contig10:418542..4186371622928783.118992-UTR-F-serratus_M_contig10:418542..418637Fucus serratus maleUTRF-serratus_M_contig10 418543..418637 +
1690962568.9367955-UTR-F-serratus_M_contig10:418542..4186371690962568.9367955-UTR-F-serratus_M_contig10:418542..418637Fucus serratus maleUTRF-serratus_M_contig10 418543..418637 +
1622928783.1784172-UTR-F-serratus_M_contig10:421460..4216891622928783.1784172-UTR-F-serratus_M_contig10:421460..421689Fucus serratus maleUTRF-serratus_M_contig10 421461..421689 +
1690962568.9775002-UTR-F-serratus_M_contig10:421460..4216891690962568.9775002-UTR-F-serratus_M_contig10:421460..421689Fucus serratus maleUTRF-serratus_M_contig10 421461..421689 +
1622928783.20571-UTR-F-serratus_M_contig10:421714..4219251622928783.20571-UTR-F-serratus_M_contig10:421714..421925Fucus serratus maleUTRF-serratus_M_contig10 421715..421925 +
1690962568.986627-UTR-F-serratus_M_contig10:421714..4219251690962568.986627-UTR-F-serratus_M_contig10:421714..421925Fucus serratus maleUTRF-serratus_M_contig10 421715..421925 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928783.1320486-CDS-F-serratus_M_contig10:418637..4200741622928783.1320486-CDS-F-serratus_M_contig10:418637..420074Fucus serratus maleCDSF-serratus_M_contig10 418638..420074 +
1690962568.9464116-CDS-F-serratus_M_contig10:418637..4200741690962568.9464116-CDS-F-serratus_M_contig10:418637..420074Fucus serratus maleCDSF-serratus_M_contig10 418638..420074 +
1622928783.1454265-CDS-F-serratus_M_contig10:420661..4209791622928783.1454265-CDS-F-serratus_M_contig10:420661..420979Fucus serratus maleCDSF-serratus_M_contig10 420662..420979 +
1690962568.954172-CDS-F-serratus_M_contig10:420661..4209791690962568.954172-CDS-F-serratus_M_contig10:420661..420979Fucus serratus maleCDSF-serratus_M_contig10 420662..420979 +
1622928783.1611662-CDS-F-serratus_M_contig10:421358..4214601622928783.1611662-CDS-F-serratus_M_contig10:421358..421460Fucus serratus maleCDSF-serratus_M_contig10 421359..421460 +
1690962568.9668994-CDS-F-serratus_M_contig10:421358..4214601690962568.9668994-CDS-F-serratus_M_contig10:421358..421460Fucus serratus maleCDSF-serratus_M_contig10 421359..421460 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig10.66.1

>prot_F-serratus_M_contig10.66.1 ID=prot_F-serratus_M_contig10.66.1|Name=mRNA_F-serratus_M_contig10.66.1|organism=Fucus serratus male|type=polypeptide|length=619bp
MNLLAGYGSGDENSSDEGGARSAAPARKQTITSFRAPRVNAAPHVVASRA
MDQASSSLMAPPTGMLGLKNSTPKVGGQIMIHNPKAEHFRAPVQGPAHPH
KRELPVPAGGRATGTGGVIEQTSLEDWSFHEQYHTFHQFGYAVDCRGDTV
GNLAEHGKRQGDTVLTADAGGVRRKRKKSGGDGANEGGDVGDGKEDADRD
LGETDTDSVWAPEAPREKTDFEAGRMTEEQSKFREAWEAEQAKKHREYNM
EEDHDRRDERKISHLLPPRHNRDTESKKARSTFHGKAQHDYQGRSWMAPP
AGARLEEEGEDHQCFTPKKCIHRYAGHTKGVQAISFFPGYGHLLLSASMD
GTVKIWDVNGGRGQRRTYIGHTAAVRDVQFSNDGKQFISAGYDRFVRQWD
TETGQCLGTFTNRKMPYCAKFYPVDNNIFLCGCSDNRVVQYDARSGEVVQ
EYNHHLGPVNTVLFVDDNQRFVSTSDDKKVLIWEYNIPVPIKYISEPDMH
SMPATTLHPSGGFFVGQSLDNKIVTWTARDKFRQMRKKEFKGHVNAGYAC
RMAFSPNGKFLASGDGQGKMYIWDWGSTKVYRKHQCHDDGPCIDIAWHPL
EPSWVATAGWDGIIKLWD*
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mRNA from alignment at F-serratus_M_contig10:418543..421925+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig10.66.1 ID=mRNA_F-serratus_M_contig10.66.1|Name=mRNA_F-serratus_M_contig10.66.1|organism=Fucus serratus male|type=mRNA|length=3383bp|location=Sequence derived from alignment at F-serratus_M_contig10:418543..421925+ (Fucus serratus male)
GCAACCGCTGGGTGCGTCCTCTCGCTGTCCCGATCTCAGTGTTGTAGTCT
GACATTGTATCGTGATAATTAATCCAGTAGTCTCGTGAAGTCACAATGAA
CCTTTTGGCAGGATACGGCAGTGGCGACGAGAACTCATCCGATGAGGGCG
GTGCAAGATCGGCAGCGCCTGCTCGGAAACAGACCATTACATCTTTCCGG
GCGCCGCGTGTGAACGCAGCACCTCACGTGGTCGCATCTAGAGCGATGGA
CCAGGCTTCGTCTTCCCTTATGGCCCCACCGACGGGGATGCTGGGTCTTA
AGAATAGTACTCCGAAGGTGGGAGGTCAAATTATGATCCACAACCCCAAG
GCCGAGCACTTCCGCGCACCTGTGCAAGGCCCAGCACACCCGCACAAGCG
AGAGCTGCCCGTCCCGGCCGGTGGGCGCGCCACGGGTACCGGCGGCGTGA
TCGAGCAGACCTCTCTAGAAGATTGGTCCTTCCATGAGCAGTACCACACC
TTCCACCAGTTCGGCTACGCGGTGGACTGTCGGGGCGACACCGTCGGCAA
CCTTGCCGAGCACGGGAAGCGTCAGGGGGACACGGTTCTCACAGCGGACG
CCGGAGGCGTGCGACGCAAGCGGAAGAAGAGCGGCGGGGACGGGGCAAAT
GAGGGTGGCGATGTCGGCGACGGAAAGGAGGATGCTGATCGAGATCTTGG
TGAAACAGACACGGACAGCGTGTGGGCTCCGGAGGCACCGAGGGAAAAAA
CGGACTTCGAGGCAGGCAGGATGACCGAAGAGCAATCAAAATTCCGAGAG
GCTTGGGAGGCGGAGCAGGCAAAGAAGCACCGCGAGTACAACATGGAGGA
GGACCACGACAGACGAGACGAACGCAAAATCTCGCACCTTCTTCCGCCGA
GGCACAACCGGGACACGGAGTCCAAGAAGGCGCGGTCTACATTCCACGGA
AAGGCGCAGCACGACTACCAGGGGAGGTCGTGGATGGCGCCGCCTGCCGG
AGCAAGGCTTGAGGAGGAAGGGGAAGACCACCAGTGCTTCACGCCCAAGA
AGTGCATCCATCGGTACGCAGGGCACACGAAAGGAGTGCAGGCGATCTCG
TTCTTCCCGGGGTATGGGCACTTGCTTCTTTCAGCGAGCATGGATGGCAC
GGTGAAGATCTGGGACGTGAACGGGGGGAGAGGGCAGCGGCGGACGTACA
TAGGGCACACAGCGGCCGTGCGGGACGTGCAGTTTAGCAACGACGGAAAG
CAGTTCATCAGCGCCGGATACGACCGCTTCGTGCGGCAATGGGACACGGA
GACGGGGCAGTGCCTGGGGACGTTCACTAACCGTAAGATGCCTTACTGCG
CCAAGTTCTACCCGGTCGACAACAACATATTCTTGTGCGGTTGCTCGGAC
AACCGCGTCGTGCAATACGACGCCCGTTCCGGGGAGGTTGTACAGGAATA
CAATCACCACCTGGGACCCGTCAACACGGTGCTCTTTGTGGATGACAACC
AGCGCTTTGTCAGCACTTCCGACGACAAAAAGGTGCGCACGAGGCGTGGG
GGTCGTTACTGTTGTGCCGTGTGTTAGTCTATGACGCGCATTCTGGGCGC
TCGGGGGAACGACACGCTGTAGTCGCTGCCCGACCCCGAAAGACACATGG
ACATCCATACCGGTATTCGTTCTGTACAACTGCTTTTGCTGTTCTACTAT
GATATGAACAATCTTGGTTGCTTAGAGAGTGACAAGGGTTGTTGGCGGCG
TCTTCCCTTTGCATAAGATTGACATACGCTTCTAATGACGGGTGCCCCGG
CACCGGAGAAGCGAACGTTTGGCGTCGCATTGAGTCGGTCGTCGAGAGAT
ATATTTATTTGCGTGTTTTGTATCCCGTGCATTTTCATTACGTTTTTCGA
CCATAGCAAAACCCCAATGCCCTCTCGTCTCCTCTCCTTTGCTTCCCCCG
TTCGAATTCGTGCGGGAGAACCACCGCATTTCACTCCTTACTTAGTCTTT
TATTATTCCCTTGCTCTCGCCTCCCCTTTCCCGCCGCTCTCATGTGTGGG
ACTCTCTTTCCCTCTCTTTCCCGCTGTCGGACCCCGATGACCCGGCCCCA
CGCCGTCCACCCGACGCAGGTGTTGATTTGGGAGTACAACATCCCCGTGC
CCATCAAGTACATCTCGGAGCCGGACATGCACTCAATGCCGGCGACGACT
CTCCATCCTTCGGGAGGTTTCTTCGTGGGACAGTCCCTTGACAATAAGAT
CGTCACGTGGACGGCCCGGGACAAATTCAGGCAGATGCGGAAGAAGGAGT
TCAAGGGCCACGTGAACGCGGGCTACGCCTGCCGCATGGCCTTCAGCCCG
AACGGAAAGTTCTTGGCGTCCGGGGACGGGCAGGGGAAGATGTACATTTG
GGACTGGGGGAGCACCAAGGTCTACCGTAAGCATCAGGTAAGAGAGCACG
TTGAGCGACCCAACCTCTATATACCCCAAGCGGGTTGGAACATTTTTGTT
TGTGGTTTGTTCTTCTCCGAAGGGGGCATGTACTGTTAAAAGGGTAAAGA
GCGCGCATCCTAACTCAAGGTAGAGCAACAAATTGTGCCCGGACTGCTGC
CCAAGTGACATAAGATAAGTGCCTGACGCGCGCGTGGAGTTGTGGGCGCT
TTCTTCCCATCTTCAGGTGCCTGCTCGCCGCCGCTACGTGCACCGATCAC
CGGTTCAGCGCTTTGTGAAATGATGGATTCGCCTGCTCTCGGCACGTTCT
GTGTTTCATTTTTCGCCCCCCCCCCCCCCCTTTTTCCCTCACACTGTTTG
GCCCACCGTACATCAGTGCCACGACGACGGCCCCTGTATCGACATTGCAT
GGCATCCCCTGGAGCCGAGCTGGGTTGCAACAGCGGGCTGGGACGGAATT
ATAAAGCTCTGGGACTAGCGGGGATGGACGCGTGAGACCCGAGGTGCTTT
CTAGAGTCCGCCGGACTCTGCATTTGTAAGAAGAGGGCGACTGAATTTTG
TGTATCCCACTATTAATAGTTTGGCTGAATGGCCACCGAGGCGTGTGTAC
CCTAGGCGGTCAAATTCTCTGTAGTCACGTTGTCAGGGGATACTCTCTAA
GCGGTTGTGTCCTGAGGATAATGTGGCAAGTGACAGGGGAACTCTAAGCG
GTTGTGACAGGGGAACTCTAAGCGGTTTTGTCCTGAGGATAATGCGGCAA
GTGATAGGGGAGTTCACCTCCAACATCGGGACGTTGGGCTTAGCATCCCC
TGTCGAGTTTTTCCGAAGCAGCGGGGGCACGGACGTTTCAGGGCGTAGTT
CTAGAAGGACTTCAAAGGACCTTCCGCAAACGGCAACGTTTATTGGTCTA
TCAGAGTCATAGTTGTCGTTAATGCGAGATGGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig10:418543..421925+

>mRNA_F-serratus_M_contig10.66.1 ID=mRNA_F-serratus_M_contig10.66.1|Name=mRNA_F-serratus_M_contig10.66.1|organism=Fucus serratus male|type=CDS|length=3714bp|location=Sequence derived from alignment at F-serratus_M_contig10:418543..421925+ (Fucus serratus male)
ATGAACCTTTTGGCAGGATACGGCAGTGGCGACGAGAACTCATCCGATGA
GGGCGGTGCAAGATCGGCAGCGCCTGCTCGGAAACAGACCATTACATCTT
TCCGGGCGCCGCGTGTGAACGCAGCACCTCACGTGGTCGCATCTAGAGCG
ATGGACCAGGCTTCGTCTTCCCTTATGGCCCCACCGACGGGGATGCTGGG
TCTTAAGAATAGTACTCCGAAGGTGGGAGGTCAAATTATGATCCACAACC
CCAAGGCCGAGCACTTCCGCGCACCTGTGCAAGGCCCAGCACACCCGCAC
AAGCGAGAGCTGCCCGTCCCGGCCGGTGGGCGCGCCACGGGTACCGGCGG
CGTGATCGAGCAGACCTCTCTAGAAGATTGGTCCTTCCATGAGCAGTACC
ACACCTTCCACCAGTTCGGCTACGCGGTGGACTGTCGGGGCGACACCGTC
GGCAACCTTGCCGAGCACGGGAAGCGTCAGGGGGACACGGTTCTCACAGC
GGACGCCGGAGGCGTGCGACGCAAGCGGAAGAAGAGCGGCGGGGACGGGG
CAAATGAGGGTGGCGATGTCGGCGACGGAAAGGAGGATGCTGATCGAGAT
CTTGGTGAAACAGACACGGACAGCGTGTGGGCTCCGGAGGCACCGAGGGA
AAAAACGGACTTCGAGGCAGGCAGGATGACCGAAGAGCAATCAAAATTCC
GAGAGGCTTGGGAGGCGGAGCAGGCAAAGAAGCACCGCGAGTACAACATG
GAGGAGGACCACGACAGACGAGACGAACGCAAAATCTCGCACCTTCTTCC
GCCGAGGCACAACCGGGACACGGAGTCCAAGAAGGCGCGGTCTACATTCC
ACGGAAAGGCGCAGCACGACTACCAGGGGAGGTCGTGGATGGCGCCGCCT
GCCGGAGCAAGGCTTGAGGAGGAAGGGGAAGACCACCAGTGCTTCACGCC
CAAGAAGTGCATCCATCGGTACGCAGGGCACACGAAAGGAGTGCAGGCGA
TCTCGTTCTTCCCGGGGTATGGGCACTTGCTTCTTTCAGCGAGCATGGAT
GGCACGGTGAAGATCTGGGACGTGAACGGGGGGAGAGGGCAGCGGCGGAC
GTACATAGGGCACACAGCGGCCGTGCGGGACGTGCAGTTTAGCAACGACG
GAAAGCAGTTCATCAGCGCCGGATACGACCGCTTCGTGCGGCAATGGGAC
ACGGAGACGGGGCAGTGCCTGGGGACGTTCACTAACCGTAAGATGCCTTA
CTGCGCCAAGTTCTACCCGGTCGACAACAACATATTCTTGTGCGGTTGCT
CGGACAACCGCGTCGTGCAATACGACGCCCGTTCCGGGGAGGTTGTACAG
GAATACAATCACCACCTGGGACCCGTCAACACGGTGCTCTTTGTGGATGA
CAACCAGCGCTTTGTCAGCACTTCCGACGACAAAAAGATGAACCTTTTGG
CAGGATACGGCAGTGGCGACGAGAACTCATCCGATGAGGGCGGTGCAAGA
TCGGCAGCGCCTGCTCGGAAACAGACCATTACATCTTTCCGGGCGCCGCG
TGTGAACGCAGCACCTCACGTGGTCGCATCTAGAGCGATGGACCAGGCTT
CGTCTTCCCTTATGGCCCCACCGACGGGGATGCTGGGTCTTAAGAATAGT
ACTCCGAAGGTGGGAGGTCAAATTATGATCCACAACCCCAAGGCCGAGCA
CTTCCGCGCACCTGTGCAAGGCCCAGCACACCCGCACAAGCGAGAGCTGC
CCGTCCCGGCCGGTGGGCGCGCCACGGGTACCGGCGGCGTGATCGAGCAG
ACCTCTCTAGAAGATTGGTCCTTCCATGAGCAGTACCACACCTTCCACCA
GTTCGGCTACGCGGTGGACTGTCGGGGCGACACCGTCGGCAACCTTGCCG
AGCACGGGAAGCGTCAGGGGGACACGGTTCTCACAGCGGACGCCGGAGGC
GTGCGACGCAAGCGGAAGAAGAGCGGCGGGGACGGGGCAAATGAGGGTGG
CGATGTCGGCGACGGAAAGGAGGATGCTGATCGAGATCTTGGTGAAACAG
ACACGGACAGCGTGTGGGCTCCGGAGGCACCGAGGGAAAAAACGGACTTC
GAGGCAGGCAGGATGACCGAAGAGCAATCAAAATTCCGAGAGGCTTGGGA
GGCGGAGCAGGCAAAGAAGCACCGCGAGTACAACATGGAGGAGGACCACG
ACAGACGAGACGAACGCAAAATCTCGCACCTTCTTCCGCCGAGGCACAAC
CGGGACACGGAGTCCAAGAAGGCGCGGTCTACATTCCACGGAAAGGCGCA
GCACGACTACCAGGGGAGGTCGTGGATGGCGCCGCCTGCCGGAGCAAGGC
TTGAGGAGGAAGGGGAAGACCACCAGTGCTTCACGCCCAAGAAGTGCATC
CATCGGTACGCAGGGCACACGAAAGGAGTGCAGGCGATCTCGTTCTTCCC
GGGGTATGGGCACTTGCTTCTTTCAGCGAGCATGGATGGCACGGTGAAGA
TCTGGGACGTGAACGGGGGGAGAGGGCAGCGGCGGACGTACATAGGGCAC
ACAGCGGCCGTGCGGGACGTGCAGTTTAGCAACGACGGAAAGCAGTTCAT
CAGCGCCGGATACGACCGCTTCGTGCGGCAATGGGACACGGAGACGGGGC
AGTGCCTGGGGACGTTCACTAACCGTAAGATGCCTTACTGCGCCAAGTTC
TACCCGGTCGACAACAACATATTCTTGTGCGGTTGCTCGGACAACCGCGT
CGTGCAATACGACGCCCGTTCCGGGGAGGTTGTACAGGAATACAATCACC
ACCTGGGACCCGTCAACACGGTGCTCTTTGTGGATGACAACCAGCGCTTT
GTCAGCACTTCCGACGACAAAAAGGTGTTGATTTGGGAGTACAACATCCC
CGTGCCCATCAAGTACATCTCGGAGCCGGACATGCACTCAATGCCGGCGA
CGACTCTCCATCCTTCGGGAGGTTTCTTCGTGGGACAGTCCCTTGACAAT
AAGATCGTCACGTGGACGGCCCGGGACAAATTCAGGCAGATGCGGAAGAA
GGAGTTCAAGGGCCACGTGAACGCGGGCTACGCCTGCCGCATGGCCTTCA
GCCCGAACGGAAAGTTCTTGGCGTCCGGGGACGGGCAGGGGAAGATGTAC
ATTTGGGACTGGGGGAGCACCAAGGTCTACCGTAAGCATCAGGTGTTGAT
TTGGGAGTACAACATCCCCGTGCCCATCAAGTACATCTCGGAGCCGGACA
TGCACTCAATGCCGGCGACGACTCTCCATCCTTCGGGAGGTTTCTTCGTG
GGACAGTCCCTTGACAATAAGATCGTCACGTGGACGGCCCGGGACAAATT
CAGGCAGATGCGGAAGAAGGAGTTCAAGGGCCACGTGAACGCGGGCTACG
CCTGCCGCATGGCCTTCAGCCCGAACGGAAAGTTCTTGGCGTCCGGGGAC
GGGCAGGGGAAGATGTACATTTGGGACTGGGGGAGCACCAAGGTCTACCG
TAAGCATCAGTGCCACGACGACGGCCCCTGTATCGACATTGCATGGCATC
CCCTGGAGCCGAGCTGGGTTGCAACAGCGGGCTGGGACGGAATTATAAAG
CTCTGGGACTAGTGCCACGACGACGGCCCCTGTATCGACATTGCATGGCA
TCCCCTGGAGCCGAGCTGGGTTGCAACAGCGGGCTGGGACGGAATTATAA
AGCTCTGGGACTAG
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