mRNA_F-serratus_M_contig10.58.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig10.58.1
Unique NamemRNA_F-serratus_M_contig10.58.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig10.58.1 vs. uniprot
Match: D7G2H0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2H0_ECTSI)

HSP 1 Score: 359 bits (921), Expect = 1.910e-118
Identity = 168/241 (69.71%), Postives = 200/241 (82.99%), Query Frame = 1
Query:    1 VRKGEKADRKPIFWAESLVLTFFLAFGGGILAPFLLGKPPVVFVNDLIVPLVTLCWILSHRAEGVVFSILNAPVVQQVIQVLAEVFRANSLCGMVALSNSSLKAGKDYPIPLWGPIFLGTISGCGGLFLPLDKGLKGLKHGAPWPLESAFYGSAFFNIFVFDPNVGPYLRDAAAAVLGEGDLQTQGKAIVAAFLCSCAILKTFLGPEFNPFTPIHNAMYTITGIPKPAAGGTPRTEKPKED 723
            VRK EK   K +FWAESLV+T+ +AFGGGILAPFLLGKPPV+FVNDLIVPLV +CW +S+RAEG +F+++N P+++QVI VL+EVFRANS+CG+V LSNS LK GK YPI LWGPI LGT+ GCGGLFLPLDKGLKGLK+GAPWPL+SAFYGS FFN+FV+DPNVGPYLRDAAA  L +GDL  QG+AIVA FLC  A+ +T + P FNPFTP+HN +YT+TG+P P A      EKPK D
Sbjct:   59 VRKIEKDSGKQMFWAESLVMTYMMAFGGGILAPFLLGKPPVMFVNDLIVPLVAVCWFVSNRAEGPIFALINTPIMKQVILVLSEVFRANSMCGIVVLSNSILKPGKHYPIALWGPILLGTVGGCGGLFLPLDKGLKGLKNGAPWPLQSAFYGSMFFNLFVYDPNVGPYLRDAAALFL-DGDLVVQGRAIVAGFLCVVALAQTLISPAFNPFTPVHNVVYTVTGVPNPEAVAVATGEKPKAD 298          
BLAST of mRNA_F-serratus_M_contig10.58.1 vs. uniprot
Match: A0A835Z0I7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0I7_9STRA)

HSP 1 Score: 239 bits (611), Expect = 4.770e-72
Identity = 114/224 (50.89%), Postives = 151/224 (67.41%), Query Frame = 1
Query:   28 KPIFWAESLVLTFFLAFGGGILAPFLLGKPPVVFVNDLIVPLVTLCWILSHRAEGVVFSILNAPVVQQVIQVLAEVFRANSLCGMVALSNSSLKAGKDYPIPLWGPIFLGTISGCGGLFLPLDKGLKGLKHGAPWPLESAFYGSAFFNIFVFDPNVGPYLRDAAAAVLGEGDLQTQGKAIVAAFLCSCAILKTFLGPEFNPFTPIHNAMYTITGIPKPAAGGTP 699
            K ++WA+SLVLTF + FGGGI+APFLLGKPPV+ +NDL+V  V   W++ +R E  V ++L APV+ Q +  +AEVFRAN  C MV ++   + AGK YPIP WGP+ LGTI+GC G+FLP DKGL  +K G+PWPL+SAFYGS  F++   DP+V    R A A   G+       +A V AF  + A L+T+ GP FNPF+P+H   Y I+G+  P A G P
Sbjct:   43 KNMYWAQSLVLTFLMCFGGGIVAPFLLGKPPVILINDLLVVAVLGSWLVVNRLEEPVGALLRAPVISQALAFMAEVFRANGFCRMVQVAFKEIPAGKYYPIPFWGPVLLGTIAGCAGMFLPFDKGLASIKGGSPWPLQSAFYGSLAFHLLAHDPHV----RAALAPYAGDYTADA-ARACVVAFFAAVATLQTYAGPHFNPFSPLHRVAYAISGVKAPGANGAP 261          
BLAST of mRNA_F-serratus_M_contig10.58.1 vs. uniprot
Match: A0A835Z4Q5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4Q5_9STRA)

HSP 1 Score: 153 bits (386), Expect = 1.220e-39
Identity = 85/213 (39.91%), Postives = 116/213 (54.46%), Query Frame = 1
Query:   40 WAESLVLTFFLAFGGGILAPFLLGKPPVVFVNDLIVPLVTLCWIL-SHRAEGVVFSILNAPVVQQVIQVLAEVFRANSLCGMVALSNSSLKAGKDYP----IPLWGPIFLGTISGCGGLFLPLDKGLKGLKHGAPWPLESAFYGSAFFNIFVFDPNVGPYLRDAAAAVLGEGDLQTQGKAIVAAFLCSCAILKTFLGPEFNPFTPIHNAMYTI 663
            W ES+VL    AFGG +LA  LL +PP +   D  +PL+   W L +H     + ++L  PVV Q+  VL E  RA  LC +V  +  SL+A    P    +P +GPI  G +S CGGLF P D+GL+ L+ G PWPL+SA Y + F+++ V +   GP  R     VLG        +A VAA    C  L+T  GP FN   P+H A+Y +
Sbjct:   28 WLESIVLVTLTAFGGHLLAQTLLREPPDLITCDTYLPLILASWYLVNHSPFNAIPALLAMPVVHQLAVVLMESHRAAVLCAVVTAAAGSLRAAGSAPNAPALPFFGPIIAGAVSACGGLFFPPDRGLRSLREGVPWPLQSALYAATFYHLAVHEQ--GPLGRFLRHYVLGAAVDAAAARAAVAALFSICGALQTAFGPSFNALAPLHAAVYAL 238          
BLAST of mRNA_F-serratus_M_contig10.58.1 vs. uniprot
Match: A0A4D9CX56_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CX56_9STRA)

HSP 1 Score: 144 bits (363), Expect = 3.160e-34
Identity = 78/213 (36.62%), Postives = 114/213 (53.52%), Query Frame = 1
Query:   40 WAESLVLTFFLAFGGGILAPFLLGKPPVVFVNDLIVPLVTLCWILSHRAEGVVFSILNAPVVQQVIQVLAEVFRANSLCGMVALSNSSLKAGKDYPIPLWGPIFLGTISGCGGLFLPLDKGLKGLKHGAPWPLESAFYGSAFFNIFVFDPNV-GPYLRDAAAAVLGEGDLQTQGKAIVAAFLCSCAILKTFLGPEFNPFTPIHNAMYTITGIP 675
            W   LVL F   F GG + P   G+ PV+FVNDL+VPLV L W L H     V  +L     + ++  L E++RA S+   V  + + +  G  YPI + GP+ +GT+SG  G F+P D+G+  L  G P  L++      F+++   DP + G YLR   A  L + +     KA+   F  + A L    GP++NPFTP+H  +Y + GIP
Sbjct:   53 WLHHLVLVFLTGFAGGTIIPMFFGRTPVLFVNDLLVPLVCLSWYLVHYTR--VGGLLQTSPCKFLLVALFEIYRAASILKTVGQAATDIAPGPYYPIAVVGPVLVGTLSGSMGAFMPPDRGISFLATGVPLNLQTTLLACLFYHLAAHDPALPGAYLRGLPALRLSDPE---NLKALTVFFFVAMAFLSLVKGPDYNPFTPVHTLLYQVLGIP 260          
BLAST of mRNA_F-serratus_M_contig10.58.1 vs. uniprot
Match: A0A7S2SKA8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SKA8_9STRA)

HSP 1 Score: 139 bits (350), Expect = 1.770e-33
Identity = 84/238 (35.29%), Postives = 121/238 (50.84%), Query Frame = 1
Query:    4 RKGEKADRKPIFWAESLVLTFFLAFGGGILAPFLLGKPPVVFVNDLIVPLVTLCWILSHRAEG--VVFSILNAPVVQQVIQVLAEVFRANSLCGMVALSNSSLKAGKDYPIPLWGPIFLGTISGCGGLFLPLDKGLKGLKHGAPWPLESAFYGSAFFNIFVFDPNVGPYLRDAAAAVLGEGDLQTQGKAIVAAFLCSCAILK-TFLGPEFNPFTPIHNAMYTITGIPKPAAGGTPRTE 708
            R+ E+   +  FW  SLV T    +GGGI+ P +LG  P    ND  + LV   W   H      V + + N+ V++  +  + E  R N +     ++NS L     YPIP+WGPI  G ISGC G F+    GL  ++    W ++S+FY +A+++I V DP VGP L     +  G   L  +   I A  L + A+L+  F G  FNPF P+H+ +Y ITG   PA   T  +E
Sbjct:   87 RRQERVQAERYFWLNSLVRTAIACYGGGIIVPMMLGMKPFPIENDAAITLVLFSWWTLHGTPAPLVTWVLDNSTVLRCFLFFIFEALRCNVVVKWCIIANSMLAPSVHYPIPIWGPILCGGISGCFGGFILGGVGL--VQSEVSWLIQSSFYAAAYYHITVNDPIVGPILGKLHISGAGSDPLVARMTCIFA--LGAVAVLQEAFFGAHFNPFAPVHHLLYKITGAHNPAHAETGESE 320          
BLAST of mRNA_F-serratus_M_contig10.58.1 vs. uniprot
Match: D7FML9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FML9_ECTSI)

HSP 1 Score: 110 bits (275), Expect = 1.240e-22
Identity = 64/217 (29.49%), Postives = 106/217 (48.85%), Query Frame = 1
Query:  115 PPVVFVNDLIVPLVTLCWILSHRAEGVVFSILNAPVVQQVIQVLAEVFRANSLCGMVALSNSSLKAGKDYPIPLWGPIFLGTISGCGGLFLPLDKGLKGLKHGAPWPLESAFYGSAFFNIFVFDPNV-GPYLRDAAAAVLGEGDLQTQGKAIVAAFLCSCAILKTFLGPEFNPFTPIHNAMYTITGIPKPAAG-----GTPRTEKPKED*NNVSWRE 747
            PP+   NDL+V  + + ++ S   +  V + +  P + + + +L+   R N +C +V  + +       YPI L+GPI +G   G GG  +P DKGL  +    PW ++  F  + F+++   D  + G  +R A      E   +   + I   F     +++T+  P+FNPFTP H A+YT+TG+PK A        TP T+  K   N  +  E
Sbjct:    4 PPLFLNNDLLVTCIMVFFLFSVVFDPYVVNFIKTPHLWKAMALLSTTSRMNKICFIVDYALTKFPPSPYYPIALFGPIMIGLARGIGGSLVPADKGLSSISKDLPWAVQLCFSVATFYHVVANDTYILGGMVRGALGL---ENATREDIRLIAVTFGVVVTVIQTYYAPKFNPFTPAHQALYTVTGMPKTAITIEVPRSTPSTDADKAKDNGGNGAE 217          
BLAST of mRNA_F-serratus_M_contig10.58.1 vs. uniprot
Match: A0A7S1VWR2_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S1VWR2_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 1.030e-16
Identity = 54/156 (34.62%), Postives = 82/156 (52.56%), Query Frame = 1
Query:   16 KADRKPIFWAESLVLTFFLAFGGGILAPFLLGKPPVVFVNDLIVPLVTLCWILSHRAEGVVFSILN-APVVQQVIQVLAEVFRANSLCGMVALSNSSLKAGKDYPIPLWGPIFLGTISGCGGLFLPLDKGLKGLKHGAPWPLESAFYGSAFFNIFV 480
            KA  K    +  L+       GGGIL P  L K PV   ND   P+  L     H    VV  ++N +PVV+ ++ V  E+ RA  +      +++++ A   +  PL+GPI  GT++GCGG FLP++KGL  +  G   P+ SAF G+   ++F+
Sbjct:   52 KAVPKTASVSYKLISMILACTGGGILVPIFLNKVPVPLANDAY-PIAILTSFAIHYYFPVVAEVMNLSPVVKSLVVVFYELIRAKVVLTFTLAASAAI-APTTFSFPLFGPIMCGTVAGCGGAFLPMNKGLDPITSGLQPPMSSAFVGATLVHLFL 205          
BLAST of mRNA_F-serratus_M_contig10.58.1 vs. uniprot
Match: A0A7S1BM49_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BM49_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 2.140e-16
Identity = 63/204 (30.88%), Postives = 97/204 (47.55%), Query Frame = 1
Query:    1 VRKGEKADRKPIFWAESLVLTFFLAFGGGILAPFLLGKPPVVFVNDLIVPLVTLCWILSHRAEGVVFSILNAPVVQQVIQVLAEVFRANSLCGMVALSNSSLKAGKDYPIPLWGPIFLGTISGCGGLFLPLDKGLKGLKHGAPWPLESAFYGSAFFNIFVFDPNVGPYLRDAAAAVLGEGDLQTQGKAIVAAFLCSCAILKTFL 612
            V K       P+F   SL L      GGGIL P  L   PV   +D+ +  + + + L  R   +         +Q ++ VL E  RA  +C     +  ++ A    P PL+GPI  GT+SGCGG F+PL KGL+  + G P P ++A  G+A +++FV        L D      G  D   +G+ +VA+F  S +++   +
Sbjct:   68 VFKSVNPKASPVFKLLSLTLA---CTGGGILVPIFLNSIPVPLASDVYIVAILISFALHSRFPILRELFSKNIALQLILIVLYETTRAGVVCKFTKKAGETILASW-LPYPLFGPIMCGTVSGCGGAFMPLSKGLEPTRAGMPKPAKTALIGAAAYHLFV-----NTKLTD------GVIDAPQKGQVLVASFFISVSLVDLLM 256          
BLAST of mRNA_F-serratus_M_contig10.58.1 vs. uniprot
Match: A0A1E7EP48_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EP48_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 6.940e-16
Identity = 71/205 (34.63%), Postives = 99/205 (48.29%), Query Frame = 1
Query:   10 GEKADRKPIFWAESLVLTFFLAFGGGILAPFLLGKPPVVFVNDLIVPLVTLCWILSHRAEGVVFSILNAPVVQQVIQVLAEVFRANSLCGMVALSNSSLKAGKDYPIPLWGPIFLGTISGCGGLFLPLDKGLKGLKHGAPWPLESAFYGSAFFNIFVFDPNVG-----PYLRDAAAAVLGEGDLQTQGKAIVAAFLCSCAILKTF 609
            G  ++ K  F A  L+       GGGIL P  L   PV    D   P+     IL  R+   V S L+A +   ++ V  E  R   +   V L+ S++ A   +  P++GPI  GTI GCGG FLP DKGL  +K G P P+ +AF G+ FF++F      G     P++ D    +  + D   +GK IVA +     IL TF
Sbjct:   73 GNSSNEKKKFSAYKLITMILACTGGGILVPIFLNTIPVTIAIDAY-PIA----ILQSRS---VVSHLSA-ITNALMVVFYETIRTYVVTLFVGLAASTI-APSQFSFPVFGPIICGTIGGCGGAFLPFDKGLAPIKDGLPPPVFTAFTGATFFHLFTHYTKNGNDTGIPFVDDVLDQL--QIDAPKKGKVIVALWF----ILYTF 261          
BLAST of mRNA_F-serratus_M_contig10.58.1 vs. uniprot
Match: A0A7S1RES9_ALECA (Hypothetical protein n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1RES9_ALECA)

HSP 1 Score: 87.4 bits (215), Expect = 2.760e-15
Identity = 45/153 (29.41%), Postives = 76/153 (49.67%), Query Frame = 1
Query:   37 FWAESLVLTFFLAFGGGILAPFLLGKPPVVFVNDLIVPLVTLCWILSHRAEGVVFS---ILNAPVVQQVIQVLAEVFRANSLCGMVALSNSSLKAGKDYP------IPLWGPIFLGTISGCGGLFLPLDKGLKGLKHGAPWPLESAFYGSAFF 468
            FW ++LV T   AFGGG LAP ++   PV    +     +   W ++H    V  +   I  +     V+ +L  +F+   + G + L+  ++      P      +P+ GP+  G + GCGG FLP DKGL+ ++ G  WP+ +AF+ +  +
Sbjct:  108 FWPKALVTTAIAAFGGGFLAPLIVAHCPVPLREETFFWFLVFAWYVTHHVPVVSVTWCEIAKSKAGWTVLTILFGIFKTQQIVGSIELAAKAVDHEPLMPHSRYFFVPMAGPLVCGFLGGCGGAFLPFDKGLRPIEEGKQWPVSAAFFATVIY 260          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig10.58.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2H0_ECTSI1.910e-11869.71Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z0I7_9STRA4.770e-7250.89Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z4Q5_9STRA1.220e-3939.91Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A4D9CX56_9STRA3.160e-3436.62Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A7S2SKA8_9STRA1.770e-3335.29Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
D7FML9_ECTSI1.240e-2229.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S1VWR2_9STRA1.030e-1634.62Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7S1BM49_9STRA2.140e-1630.88Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A1E7EP48_9STRA6.940e-1634.63Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]
A0A7S1RES9_ALECA2.760e-1529.41Hypothetical protein n=1 Tax=Alexandrium catenella... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig10contigF-serratus_M_contig10:244186..248492 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score228.0
Seed ortholog evalue2.9e-57
Seed eggNOG ortholog2880.D7G2H0
Hectar predicted targeting categoryother localisation
EggNOG OGs2BW3U@1,2SEWS@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-00_005940.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size1520
Cds size447
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928782.120433-UTR-F-serratus_M_contig10:244185..2443381622928782.120433-UTR-F-serratus_M_contig10:244185..244338Fucus serratus maleUTRF-serratus_M_contig10 244186..244338 +
1690962568.2882156-UTR-F-serratus_M_contig10:244185..2443381690962568.2882156-UTR-F-serratus_M_contig10:244185..244338Fucus serratus maleUTRF-serratus_M_contig10 244186..244338 +
1622928782.13195-UTR-F-serratus_M_contig10:245289..2454151622928782.13195-UTR-F-serratus_M_contig10:245289..245415Fucus serratus maleUTRF-serratus_M_contig10 245290..245415 +
1690962568.2981005-UTR-F-serratus_M_contig10:245289..2454151690962568.2981005-UTR-F-serratus_M_contig10:245289..245415Fucus serratus maleUTRF-serratus_M_contig10 245290..245415 +
1622928782.210308-UTR-F-serratus_M_contig10:247698..2484921622928782.210308-UTR-F-serratus_M_contig10:247698..248492Fucus serratus maleUTRF-serratus_M_contig10 247699..248492 +
1690962568.351091-UTR-F-serratus_M_contig10:247698..2484921690962568.351091-UTR-F-serratus_M_contig10:247698..248492Fucus serratus maleUTRF-serratus_M_contig10 247699..248492 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928782.1422663-CDS-F-serratus_M_contig10:245415..2454451622928782.1422663-CDS-F-serratus_M_contig10:245415..245445Fucus serratus maleCDSF-serratus_M_contig10 245416..245445 +
1690962568.3064039-CDS-F-serratus_M_contig10:245415..2454451690962568.3064039-CDS-F-serratus_M_contig10:245415..245445Fucus serratus maleCDSF-serratus_M_contig10 245416..245445 +
1622928782.1539187-CDS-F-serratus_M_contig10:246427..2465261622928782.1539187-CDS-F-serratus_M_contig10:246427..246526Fucus serratus maleCDSF-serratus_M_contig10 246428..246526 +
1690962568.3157213-CDS-F-serratus_M_contig10:246427..2465261690962568.3157213-CDS-F-serratus_M_contig10:246427..246526Fucus serratus maleCDSF-serratus_M_contig10 246428..246526 +
1622928782.1675441-CDS-F-serratus_M_contig10:246923..2470151622928782.1675441-CDS-F-serratus_M_contig10:246923..247015Fucus serratus maleCDSF-serratus_M_contig10 246924..247015 +
1690962568.326298-CDS-F-serratus_M_contig10:246923..2470151690962568.326298-CDS-F-serratus_M_contig10:246923..247015Fucus serratus maleCDSF-serratus_M_contig10 246924..247015 +
1622928782.1954722-CDS-F-serratus_M_contig10:247472..2476981622928782.1954722-CDS-F-serratus_M_contig10:247472..247698Fucus serratus maleCDSF-serratus_M_contig10 247473..247698 +
1690962568.339134-CDS-F-serratus_M_contig10:247472..2476981690962568.339134-CDS-F-serratus_M_contig10:247472..247698Fucus serratus maleCDSF-serratus_M_contig10 247473..247698 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig10.58.1prot_F-serratus_M_contig10.58.1Fucus serratus malepolypeptideF-serratus_M_contig10 245416..247698 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig10.58.1

>prot_F-serratus_M_contig10.58.1 ID=prot_F-serratus_M_contig10.58.1|Name=mRNA_F-serratus_M_contig10.58.1|organism=Fucus serratus male|type=polypeptide|length=149bp
MVALSNSSLKAGKDYPIPLWGPIFLGTISGCGGLFLPLDKGLKGLKHGAP
WPLESAFYGSAFFNIFVFDPNVGPYLRDAAAAVLGEGDLQTQGKAIVAAF
LCSCAILKTFLGPEFNPFTPIHNAMYTITGIPKPAAGGTPRTEKPKED*
back to top

mRNA from alignment at F-serratus_M_contig10:244186..248492+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig10.58.1 ID=mRNA_F-serratus_M_contig10.58.1|Name=mRNA_F-serratus_M_contig10.58.1|organism=Fucus serratus male|type=mRNA|length=4307bp|location=Sequence derived from alignment at F-serratus_M_contig10:244186..248492+ (Fucus serratus male)
GTGCGCAAGGGGGAGAAGGCCGACAGGAAGCCAATTTTTTGGGCCGAGTC GCTCGTGCTCACTTTCTTCTTGGCGTTCGGCGGGGGAATCTTGGCCCCAT TTCTGCTCGGCAAACCGCCGGTCGTGTTCGTGAACGACTTGATCGTTCCG CTGGTGAGACAATATATATATAGGAGTCGTTTGGCATTGATTTGAATTGA TTTGATTTGATTTGAATTGAGTTGGGTTGAAATTAATGAAATGGGTCCAC ACAGCTTATTGTATGATCCTGGTTCATGTCCGCGCGGAGCGTGGGCGCAG AAAAACATCCGACGAGCCGAAGGGCCCCGTTGTGCCCGGCGATCGGCGAT TGTTCTGAAGACACTGTTCAACGTTTGTACAAGAGTTCGTTGTATCGACG GAAACGGACGGGGATGTACTTTGTTGTTGCAGCGTGCGTGCGTTCGAAAG CTACCGAGGTTTCGACGGTTTGCGATGGCCTGGCATGGTTGGGGGGGGGG GGGTACGAGACCTCTTAATGTGCGGTTATACACACTAACTATTAGACTAT TAAGCTACTGCTGTATCGCGTGTGACGTTGCTCGATGCCCAGGCAAATGA TAAGGGCGTCTAAATAGATCTTTCTTATTTGTTCTGAAGTGTTATATATG AGTACATGAGTATAGAGACAAGAAAGCACTTGCACGAGTGCGTAGACGGG TTCTTGTCGACGGGGGGAGCAGCGTGAGTAGGCTAGGCACATCCCGGTGC TGTGTTGTCAACAGAAAATCATGATTCAAAATAGACCGGAGGGGAGAGAT AAGACATGCGGTGCTATCTTATCTGGACCTCCGGCACCACTGCTGTGTCG CATAGCATCTCACGCGCTGTCGCTCTACGAGGGCGACGCCTTTTTTTAAT TTGCCGACGGCCCCTTGATATTTTTTTTGGAACACCCGGCTTATTTCCTC CCGCCGTCATCCTCCTCCGGAAAAAAAGAGTCGCTCCACGTCCTCAGATT ATTTTAGCTTGGGGCACAATATATCGTCCGCCAATCTGATGTTCCAACAC CGCTCGCCTTGTGGGGACCGGGGCGGGGGTTCCGGTCGCTTCTTCCTCCC GCAGGTGACCTTGTGCTGGATCCTGTCTCATAGGGCGGAAGGCGTCGTGT TTTCTATCCTCAACGCGCCCGTCGTACAGCAGGTAATCCAGGTGCTCGCC GAGGTCTTCCGGGCCAACAGCTTGTGCGGCATGGTGGCGCTTTCAAACTC TAGCCTCAAGGTATGTTTTTGTAGAAAATGAAGAAAAAGATAAGGAGCTG CCGTGATTATCACGTGATTTTAGAGCGAAACATCGCTAGTCTCGCTGAAG GACCTCGTGGAAGCACTGACTCTGCCTCGAGGGATCGGGCCGTGTCCATA TTTTTCGCTTGCTGTCTTGATGTGCCGCAGTGTACATCACGGGGAAGGTG GGGGGAGGGGGGTAGAGATAAAATAAAGGCTGACATTTTTATCCAGGCGG GCACATGCTATTTACAAGTCCGAGAAGAAAAAACACGCTTGAGGCTTGAG GTTATGGAGACGCACCGCGAGCAGCAGTCCTCAAATTGTACGTTAGCAAG AAATCTAACCCACCTGAGCCGGTCGGGAATTGTTTGGCTCCGAACAAAGG GAAGCCAGTCCCCCCCCCCTCCCCCCCCATAATCGTTCGCGTATCTCCTG GGGTGGTACTGGCGTCGCCCGATATATTATCGTTGCTTACTACATACTAT TATACTATATACTTCTGGTCGTTTTGTAGACGAGTGCGGGTGAGTAGACC GATCGGTTTTGATCGCCACAGAGCCCCTCCCCCGCCGGTTGGTTTTAATA TTAATGTTTATTAATATTAACAGTCATAATATTAATGTTTATTTATATGT ATAGTCATAATATTAATGTTTATTCATATGTATAGTCATAATATCAATGT TTATTAATATCAATAGTCATAATATTAATGTTTATTAATATCAATAGTCA TAATATTAATGTTTATTGATATGTATACAAGTAGTCATAATATTAATAGT AGACGAAGCCATTGTGATTGGTCGAGCGTGCAGACAAGTGCAGAAAAGGA GAGGCGCAGCGGCGCTTTTCACTCGCTTGATCTCCTGAGTTCCATCTCCA TGCTGCCTTTGTAGCGCTTCGTTCGTTCCGCGCTGCTCAAACGTTGCCCC GTCGCGCCCCCCGCCGCCCTGATGATTTTCCGCCTCACAAAGGCGGGGAA AGACTACCCCATCCCCCTTTGGGGGCCGATATTCCTCGGTACCATTTCCG GGTGCGGAGGGCTGTTCCTGCCCCTCGACAAGGGTCTCAAGGCGAGTGGG TGTGTCCGCGGCGCCTCTAGGGGATGGAAAGCGGGCGGGCGAGGGCTCGG GCATTGTATGAGCAATCAATCATTCGTTTTTGCTTGAGTCTGGGTCCAAA ACGTGTCCGATAACAAGGACTACAGGCTACTGGCCTCCGCCTCTTTTGGT AGTAGAAGCGCGCGTGCCACAGTGACTCTTCCTTCCCGCTGCGACTCCGG CTCGGCTCCGCTCACTAGCTGCGTAGAACAGACCGCTTCGACTCCTGCGA TCACCGCAGAACCTTCCATGGCTTGAGCACAATTTTTCGGTCACGGCTAC ATCATCTCTGTACCCTACCTGTGTGCCCTCCTCTTACTTTTTTTTTTTTG ACCCCATGCGCGCGCTCTTGTCTCGCGTGCGCCCGCAGGGCCTGAAACAT GGCGCCCCTTGGCCTCTCGAGTCAGCCTTCTACGGATCGGCGTTTTTCAA TATCTTCGTCTTCGACCCCAACGTCGGACCGTGAGTGTTTATTTTATTTT TTGCGGCAGGCCTCTCGTGTTCCCAGCGTGAATCAAACACCCTTTACAAA CACAAGTGCGACTGACGATAAGGAGAGTCACGCGGAACTCCGCTTGAGCT GCCCTGGGGTTTGACGGACCATGTGTGTGTGATGTGTTTTCCACTCTTTC TCAAAAGCCCAGAAATCTCGTCTAACTCGGAGGGCGGCACGTGGGTACAG AGTTACCCCAAGTGCGATGTTATTTCTGCTTAAGTTTTCGACGATAGTAG TCTGTAGGGGCGAGAAATTATGGGACCCCCACGTTCGGTTCTTGGTTGCT ATGCTACAGCTGCTGCTGCCCTTTCACGCCATATAATCTTTACTTCTTTT GCGTAACGCCTCCCCTAACGCCGATTCTACGCGCTGCGCGGGTGGCCACA ATTTCGCTGGGGTGTGTGTGGGCGGGGGGGGGTAAAGGTACCTCCGGGAC GCTGCTGCCGCGGTTCTCGGGGAGGGGGATCTTCAGACGCAGGGGAAGGC GATCGTGGCGGCCTTCTTATGTTCGTGCGCGATTCTCAAAACCTTCTTGG GCCCCGAATTCAATCCCTTCACGCCCATCCACAACGCGATGTACACCATC ACGGGCATCCCGAAACCGGCAGCGGGTGGGACCCCTCGTACTGAGAAGCC CAAGGAAGACTGAAACAACGTCTCGTGGCGTGAAGTGCTCCTGTTCCGAA AGCCTACATAGATACCTTGCCTTCGGAGACAAATGCTTGCCCTTCGCCGA GATGGTAGTGTGTTAACGGGCTTCGGCATTGCCTATGTTCAGTCGCCGCG ATCGCCGCCTGCAGACAGTGGTAGTCTAAAGTAGCTGCTCGGGTACTTCC GGTCTGGCCGTTGCGTTCTCCGGCGGGGAATGGTCGACTCCTTGCTGGCA CAGCTTTGCGCGCGCGGCTACGGGTATGCGCGGAGGAGTTGCGAAGCCAT GGCCATGGTGGCCGTCGATTTTAATCCAGTAGATTTCACAGGCCAATATT TACTCTAGATACTGTACAACATCCGCGTCCAGCGCGCAAGAATTTTGATG TGTGAGATCATGTGCTCACTCCACGAAAATTGATTTATGGTTTGATAGTC TGGTTGAGATGGTGGCGACCGCGGTAGTGTTGGCACGACAGTGTGATAAG AGGAATCAATACATCAACTCGGGGTTTCCAGACTACGCTTACCCAATAGT CTCGTTGACTTTTCGCTCTGCATGCGACGGTAAACAAAAGCTCTAGAACA GAAAAAAAGTAATAATAATAACGTGGACAAAATCGCTCAACTTTTGCGAG CACTGTTACCCGCCGCGGAAACCAGGAGGAAGGAAAGGAACCCGTGAGTA AGAGTAAGCACCATATTCAGCCTGTGTCTGGAGAACGCGTGGGCCGACGC GGGGCGCGGCGGCCGTACCTGTCTCGCGCGACCAAATTCTCAGGCGCGAA CGGGGAC
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig10:244186..248492+

>mRNA_F-serratus_M_contig10.58.1 ID=mRNA_F-serratus_M_contig10.58.1|Name=mRNA_F-serratus_M_contig10.58.1|organism=Fucus serratus male|type=CDS|length=894bp|location=Sequence derived from alignment at F-serratus_M_contig10:244186..248492+ (Fucus serratus male)
ATGGTGGCGCTTTCAAACTCTAGCCTCAAGATGGTGGCGCTTTCAAACTC
TAGCCTCAAGGCGGGGAAAGACTACCCCATCCCCCTTTGGGGGCCGATAT
TCCTCGGTACCATTTCCGGGTGCGGAGGGCTGTTCCTGCCCCTCGACAAG
GGTCTCAAGGCGGGGAAAGACTACCCCATCCCCCTTTGGGGGCCGATATT
CCTCGGTACCATTTCCGGGTGCGGAGGGCTGTTCCTGCCCCTCGACAAGG
GTCTCAAGGGCCTGAAACATGGCGCCCCTTGGCCTCTCGAGTCAGCCTTC
TACGGATCGGCGTTTTTCAATATCTTCGTCTTCGACCCCAACGTCGGACC
GGCCTGAAACATGGCGCCCCTTGGCCTCTCGAGTCAGCCTTCTACGGATC
GGCGTTTTTCAATATCTTCGTCTTCGACCCCAACGTCGGACCGTACCTCC
GGGACGCTGCTGCCGCGGTTCTCGGGGAGGGGGATCTTCAGACGCAGGGG
AAGGCGATCGTGGCGGCCTTCTTATGTTCGTGCGCGATTCTCAAAACCTT
CTTGGGCCCCGAATTCAATCCCTTCACGCCCATCCACAACGCGATGTACA
CCATCACGGGCATCCCGAAACCGGCAGCGGGTGGGACCCCTCGTACTGAG
AAGCCCAAGGAAGACTGAGTACCTCCGGGACGCTGCTGCCGCGGTTCTCG
GGGAGGGGGATCTTCAGACGCAGGGGAAGGCGATCGTGGCGGCCTTCTTA
TGTTCGTGCGCGATTCTCAAAACCTTCTTGGGCCCCGAATTCAATCCCTT
CACGCCCATCCACAACGCGATGTACACCATCACGGGCATCCCGAAACCGG
CAGCGGGTGGGACCCCTCGTACTGAGAAGCCCAAGGAAGACTGA
back to top