mRNA_F-serratus_M_contig10.56.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig10.56.1
Unique NamemRNA_F-serratus_M_contig10.56.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig10.56.1 vs. uniprot
Match: A0A484E3J2_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E3J2_BRELC)

HSP 1 Score: 217 bits (553), Expect = 1.790e-60
Identity = 107/208 (51.44%), Postives = 143/208 (68.75%), Query Frame = 2 
Query:   89 NYYDWREVYPELEVLVRGIADIATECN---QVAAWKAWPEKHYDEGGNHDWKVFPFMHTFPAYDESRRTWVESTCTRCPATTALLRRLPNVRTALFSRLGSGSRIAGHQGWADLANHVLRCHLPLRVPS----DGPCGLWVDGEIRHHAEGEIIVFDDSKLHKAFN---DSTGDRLVLIVDMLRPSWIPLGIAEGEHTPELDAFIDAF 682
            NYY +R+++P+L++L      I  E     Q+  W  WPEKHY +G N +W+VFPF +TFPA D S+ TWV  TC+ CP TT LL+++P++RTALFS+LG  + ++ H+GWADLAN+VLR H PL VP+    D  C + V GE  +H E + IVFDDSKLH AFN   D+T  RLVLI+D+ RP  +P G A G H+ ELDAFI++F
Sbjct:  337 NYYPYRDLFPQLDLLKHNYHVILEEMEAVQQMTTWPFWPEKHYTDGNN-EWRVFPFCYTFPASDASKITWVPRTCSMCPRTTELLKKVPHIRTALFSKLGPDTTLSAHRGWADLANYVLRVHFPLVVPTLSNGDPCCAMVVSGETTYHQERKFIVFDDSKLHYAFNHHPDAT--RLVLIIDLYRPDHLPRGRARGGHSDELDAFIESF 541
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BLAST of mRNA_F-serratus_M_contig10.56.1 vs. uniprot
Match: A0A3R7GSX1_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7GSX1_9STRA)

HSP 1 Score: 218 bits (554), Expect = 2.010e-60
Identity = 115/235 (48.94%), Postives = 145/235 (61.70%), Query Frame = 2 
Query:    2 ESARGGGFNISGEWVPLARAGEPRREKTANYYDWREVYPELEVLVRGIADIATECNQV---AAWKAWPEKHYDEGGNHDWKVFPFMHTFPAYDESRRTWVESTCTRCPATTALLRRLPNVRTALFSRLGSGSRIAGHQGWADLANHVLRCHLPLRVP--SDGP--CGLWVDGEIRHHAEGEIIVFDDSKLHKAFNDSTGD-RLVLIVDMLRPSWIPLGIAEGEHTPELDAFIDAF 682
            E A  GG + S E        E + +   NYY ++E++P+L++L      I  E   V   A W  WPEKHY E  + +W+VFPF +TFPAYD ++ TWV  TC  CP T  LL+ LP +RTALFS+LG  + +A H+GWADL+NH+LRCH P+ VP  SDG   C + V GE   HAE E IVFDDSKLH AFN      RLVLI+D  RP  +P G A G H+ ELD FI+ F
Sbjct:  338 EWADDGGVDSSNE--------EIQDDDMPNYYPYQELFPQLDILKDNYNVILEEMQAVQQSATWPFWPEKHYSENDS-EWRVFPFCYTFPAYDATKTTWVAPTCVMCPRTVELLKTLPGIRTALFSKLGPNTTLAAHRGWADLSNHILRCHFPVVVPALSDGSPCCAMVVGGETTFHAEREFIVFDDSKLHYAFNHHPEKTRLVLIIDFYRPDELPRGRARGGHSDELDDFIETF 563
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BLAST of mRNA_F-serratus_M_contig10.56.1 vs. uniprot
Match: T0PTR2_SAPDV (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0PTR2_SAPDV)

HSP 1 Score: 215 bits (547), Expect = 5.470e-60
Identity = 105/203 (51.72%), Postives = 137/203 (67.49%), Query Frame = 2 
Query:   89 NYYDWREVYPELEVL---VRGIADIATECNQVAAWKAWPEKHYDEGGNHDWKVFPFMHTFPAYDESRRTWVESTCTRCPATTALLRRLPNVRTALFSRLGSGSRIAGHQGWADLANHVLRCHLPLRVPS----DGPCGLWVDGEIRHHAEGEIIVFDDSKLHKAFNDS-TGDRLVLIVDMLRPSWIPLGIAEGEHTPELDAFI 673
            +YYD+ EV+P+LE+L      I D A +      W  WPE HY  G + +W+VFP  +TFPA+D S+ TWV  TC +CPAT ALLR++P +RTALFS+LG  + +  H+GWADLAN +LRCH+ L VP+    +  C + VDGE R  A G ++VFDDSKLH AFN   T  R +LIVD+ RP+ +P G+A G HT ELDAFI
Sbjct:  302 SYYDYSEVFPQLELLRTHYETIRDEALKAQLATDWPNWPEDHYI-GEDGEWRVFPLCYTFPAWDASKTTWVTGTCAQCPATVALLRQIPGIRTALFSKLGPETTLGAHRGWADLANDILRCHVGLDVPTYDGNESTCCIVVDGEPRAQANGRVLVFDDSKLHYAFNHHPTASRCILIVDLYRPAHLPRGMARGGHTDELDAFI 503
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BLAST of mRNA_F-serratus_M_contig10.56.1 vs. uniprot
Match: M4BIF5_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BIF5_HYAAE)

HSP 1 Score: 216 bits (549), Expect = 7.210e-60
Identity = 108/206 (52.43%), Postives = 139/206 (67.48%), Query Frame = 2 
Query:   89 NYYDWREVYPELEVLVRGIADIATECN---QVAAWKAWPEKHYDEGGNHDWKVFPFMHTFPAYDESRRTWVESTCTRCPATTALLRRLPNVRTALFSRLGSGSRIAGHQGWADLANHVLRCHLPLRVP--SDGP--CGLWVDGEIRHHAEGEIIVFDDSKLHKAFNDS-TGDRLVLIVDMLRPSWIPLGIAEGEHTPELDAFIDAF 682
            NYY ++E++P+L++L    + I  E     Q+A W  WPEKHY  G + +W+VFPF +TFPAYD S+  WV +TC+ CP TTA+L+ L  +RTALFS+LG  + +  H+GWADLANHVLR H PL VP  S+G   C + V  E  +H E E IVFDDSKLH AFN   T  RLVLIVD  RP+ +P G A G H+ ELD FI++F
Sbjct:  335 NYYPYQELFPQLDILNDNYSVIVEEMQAVQQMATWPFWPEKHYTNGDS-EWRVFPFCYTFPAYDVSKTAWVPATCSMCPRTTAILKNLSGIRTALFSKLGPNTTLNAHRGWADLANHVLRVHFPLIVPTLSNGKPCCAMVVGDETSYHTEREFIVFDDSKLHYAFNHHPTETRLVLIVDFYRPNQLPRGRARGGHSDELDEFIESF 539
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BLAST of mRNA_F-serratus_M_contig10.56.1 vs. uniprot
Match: A0A8K1CCD9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CCD9_PYTOL)

HSP 1 Score: 215 bits (547), Expect = 2.020e-59
Identity = 108/206 (52.43%), Postives = 139/206 (67.48%), Query Frame = 2 
Query:   89 NYYDWREVYPELEVLVRGIADIATECNQV---AAWKAWPEKHYDEGGNHDWKVFPFMHTFPAYDESRRTWVESTCTRCPATTALLRRLPNVRTALFSRLGSGSRIAGHQGWADLANHVLRCHLPLRVPS--DGP--CGLWVDGEIRHHAEGEIIVFDDSKLHKAFNDSTGD-RLVLIVDMLRPSWIPLGIAEGEHTPELDAFIDAF 682
            N+Y + +V+P+LEVL      I  E   V   AAW  WPEKHY E  + +W+VFPF +TFPAYD SR TWV+ TC+ CP T  +LR +P +RTALFS+LG  +++  H+GWADL+NH+LRCHL L VP+  DG   C + V GE   H E +++VFDDSKLH AFN+     R VLIVD+ RP ++P G A G HT ELD FI+ F
Sbjct:  361 NFYSYAQVFPQLEVLKENYDVILEEMLAVQAGAAWPFWPEKHYKEEQS-EWRVFPFCYTFPAYDASRTTWVDHTCSLCPRTVEILRSIPGIRTALFSKLGPQTKLNAHRGWADLSNHILRCHLGLIVPTLEDGKPTCAMVVGGEESAHKERDVLVFDDSKLHYAFNNHPEKTRHVLIVDLYRPDYLPRGRARGGHTDELDEFIETF 565
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig10.56.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A484E3J2_BRELC1.790e-6051.44Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A0A3R7GSX1_9STRA2.010e-6048.94Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
T0PTR2_SAPDV5.470e-6051.72Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
M4BIF5_HYAAE7.210e-6052.43Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
A0A8K1CCD9_PYTOL2.020e-5952.43Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig10contigF-serratus_M_contig10:223102..225811 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score270.4
Seed ortholog evalue5e-70
Seed eggNOG ortholog2880.D7FJE5
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Aspartyl/Asparaginyl beta-hydroxylase
EggNOG OGs2S66E@2759,COG3555@1
Ec32 ortholog descriptionIsopenicillin N synthase-like
Ec32 orthologEc-14_006050.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size1520
Cds size441
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig10.56.1prot_F-serratus_M_contig10.56.1Fucus serratus malepolypeptideF-serratus_M_contig10 223934..224846 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928781.9586434-UTR-F-serratus_M_contig10:223101..2239331622928781.9586434-UTR-F-serratus_M_contig10:223101..223933Fucus serratus maleUTRF-serratus_M_contig10 223102..223933 -
1690962568.1893253-UTR-F-serratus_M_contig10:223101..2239331690962568.1893253-UTR-F-serratus_M_contig10:223101..223933Fucus serratus maleUTRF-serratus_M_contig10 223102..223933 -
1622928781.9923441-UTR-F-serratus_M_contig10:224846..2248581622928781.9923441-UTR-F-serratus_M_contig10:224846..224858Fucus serratus maleUTRF-serratus_M_contig10 224847..224858 -
1690962568.2149956-UTR-F-serratus_M_contig10:224846..2248581690962568.2149956-UTR-F-serratus_M_contig10:224846..224858Fucus serratus maleUTRF-serratus_M_contig10 224847..224858 -
1622928782.0034702-UTR-F-serratus_M_contig10:225576..2258111622928782.0034702-UTR-F-serratus_M_contig10:225576..225811Fucus serratus maleUTRF-serratus_M_contig10 225577..225811 -
1690962568.2226212-UTR-F-serratus_M_contig10:225576..2258111690962568.2226212-UTR-F-serratus_M_contig10:225576..225811Fucus serratus maleUTRF-serratus_M_contig10 225577..225811 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928781.9690886-CDS-F-serratus_M_contig10:223933..2241221622928781.9690886-CDS-F-serratus_M_contig10:223933..224122Fucus serratus maleCDSF-serratus_M_contig10 223934..224122 -
1690962568.199054-CDS-F-serratus_M_contig10:223933..2241221690962568.199054-CDS-F-serratus_M_contig10:223933..224122Fucus serratus maleCDSF-serratus_M_contig10 223934..224122 -
1622928781.9790967-CDS-F-serratus_M_contig10:224594..2248461622928781.9790967-CDS-F-serratus_M_contig10:224594..224846Fucus serratus maleCDSF-serratus_M_contig10 224595..224846 -
1690962568.2070818-CDS-F-serratus_M_contig10:224594..2248461690962568.2070818-CDS-F-serratus_M_contig10:224594..224846Fucus serratus maleCDSF-serratus_M_contig10 224595..224846 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig10.56.1

>prot_F-serratus_M_contig10.56.1 ID=prot_F-serratus_M_contig10.56.1|Name=mRNA_F-serratus_M_contig10.56.1|organism=Fucus serratus male|type=polypeptide|length=147bp
MHTFPAYDESRRTWVESTCTRCPATTALLRRLPNVRTALFSRLGSGSRIA
GHQGWADLANHVLRCHLPLRVPSDGPCGLWVDGEIRHHAEGEIIVFDDSK
LHKAFNDSTGDRLVLIVDMLRPSWIPLGIAEGEHTPELDAFIDAFR*
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mRNA from alignment at F-serratus_M_contig10:223102..225811-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig10.56.1 ID=mRNA_F-serratus_M_contig10.56.1|Name=mRNA_F-serratus_M_contig10.56.1|organism=Fucus serratus male|type=mRNA|length=2710bp|location=Sequence derived from alignment at F-serratus_M_contig10:223102..225811- (Fucus serratus male)
GGAATCAGCTCGGGGGGGTGGGTTCAACATTTCCGGCGAGTGGGTTCCGC
TGGCGCGAGCGGGCGAGCCACGTCGAGAAAAGACTGCCAACTACTACGAC
TGGAGGGAGGTTTACCCTGAGCTGGAGGTTCTCGTGCGTGGCATTGCAGA
CATCGCGACCGAGTGCAATCAGGTGGCTGCCTGGAAGGCCTGGCCTGAGA
AGCATTACGACGAGGGAGGGAACCACGACTGGAAGGTGATCCGCTTTCGG
GGGTTAACGCTGCTGCTAGACAGCGATAGAGTCTTTGCCGCAGGGGTCAA
CTCTCATCGAAAGCCGTTCGATTTTGCCGTGGGTTTTCTTGCGTAACATA
TTGTTATTTCCCCTACGTTTTCGCGTTTTTGTGCCATCCCTGCACCACTT
ACTGCTGTGCAGTACCACGACTATAGTTATTGTATCTCGAAGCGAAAGAA
GCGCGCGCTCCGACTCGAAACGCGTGAGCCGCCGATAAGTTGCAGTTGTA
GTTTCTCGGCAGCCGTCTCTTATTACTTCGGATGGATGCCGCCTGGCAAT
TTTTCCCGTTCGCGTGACATATATTGCAGTTGTGTCTCTCATAACAACAC
TCAGCAATCGACGATGGCGGCTTTGCTTTGTTCCGGGAACCACATGCGTG
TATTGATTTGCCCCGCTGGTCGTCCGAAAGCTTGAGCGGTTGGCGATTAA
AAATTTCACCCGCTTCGTCCTAGTTCATCCTGACTCCGTCTCGTAGAACA
TACACCAGTGCGTCGACACCGCCGTGACTAGCTCGAGAACGTCTTCTATC
CCATAAGCCTCCGTTTCCCGCACCCCACCACGTTTGCCTCCTCCACTGAA
TCCAATCGCTTGGTGCAGTAGACTATGGTATAGTATAGTATAGTGATCTT
GTTCGCACGATGCTACGAACGACTACATTTCTCTTATTTTCCCAAACGTG
AAGGTGTTTCCCTTCATGCACACGTTCCCTGCGTACGACGAGTCTCGGCG
AACGTGGGTGGAGAGCACGTGCACGCGTTGCCCGGCCACAACGGCCCTGC
TGCGGCGCCTGCCCAACGTTCGTACTGCGCTCTTCTCTCGGCTTGGGAGT
GGGTCGCGTATCGCGGGACATCAGGGCTGGGCCGACCTCGCGAATCACGT
CCTGCGATGCCACCTACCGCTGAGGGTGCCCTCGGACGGCCCGTGTGGCC
TCTGGGTGGATGGAGAGGTAAATGGGCGGATTTGACGGAGTCCTTGAATC
ATTGAATTCATTTTCTGGTTGTGATATTTCCCCCGAGTCCGAATCGTGTG
TATCCGTTGTAGAGAAAAGTCGGCGCCGAGCGAAGGTAAATAACGCGATC
TCGAGGGCTGCGTACAGTAGCTTTTGTTAAGCATCGCGCTCTCCGTTCTA
GTTGCCTATGTGGACGACACAGATATGAAGAACGCGAACCACTTTTCGCC
GAGACTCGGTCGAAATGTGCTTTATTGCGATCGTGGCGTGTACCATGGGT
TGGCTTGCTGCATATCATGTCTCCCACGATCTGGTTCGAGAATCCCGTTC
TCTACAAATGGACGGTCCTCGCTATCAAGCGTAGACCGTTCTGGTGCAGG
TGAATGCGTTATTCTCCCCCCCCATCCGTTATCCCAACCTTCCAACCTTG
AAACCCATTCTTTGTCTCGCTACTCTCGTCCGGCCGCAGATTCGCCACCA
CGCGGAAGGCGAAATAATTGTTTTCGACGACAGCAAGCTGCACAAGGCGT
TCAATGATTCCACCGGAGACAGGCTTGTACTGATCGTCGACATGCTCAGA
CCATCGTGGATACCCCTGGGAATCGCTGAAGGGGAGCACACGCCAGAGCT
TGACGCTTTCATCGACGCCTTCAGATAGAACCTCTCGTTCGTTTTGCGCT
CGCGCGTTTCCCTCGCTGTTGATGTCCCCGTGATCTAGGGTCGTGGGATG
TCGTGCAGTAGGGTTGTCGTGCCGTGGGATGTCGTGCCGCGGGATGTCGT
GCCGCGGGATGTCGTGCCGCGGGATGTCGTGCCGCGGGAGGTGGCACTGT
TCGCCGCTGGAGGCTGCGACCCGGACTCGATGTCGTGCGCCGCCTGGAGT
CGTGTGCTGCTGCTGCCGAAGAAAGAAACGGACGCTGACGAGGGAAAAGC
AAAGGTGGTGTCTAGTTGTTGCTTTCACGTCAAGATCGAGGATACGTTGG
TAAACTTCCGCGTCTTTGACCTGTCCCCCGGCATCTTTCGATGCGCTTGA
GCCGCTTACCAGGATGAACATTTTACACTATATCGCGGCGTCGTTATCGG
GACGTCCTTCGACCGCAGGGAGCCACCCGTCCTTTGTAAATGAAAAATAG
TTTTCCTCGCTGGCGATGTTGTGACGCTCGCAAAGAAATCTAAACTGCGG
GGGTTCGGATCCTCCACCTGTTGGTGTTGCAGGGTTTTTGTTCGGTGTAA
TGTGTAGTTAAGTGCGTTTCCCCCTCCTAGAAATAAGAAAAGTAATAGTG
TTCAGGGAGGCTCGGTTATGGGTGGAGTCGCCCCCGTGCGTCCCTTTCAG
CCAATGAATATCCTTGAATATCCTTGTACTCATGGTGATTGGACGAAAGC
AAACGATCAATTCGCCGACGCAGTCCCAAGTTGGCTCGATCCTTTTGTGG
TTTGTTTTCCCCGTTTTGGGCGACAAACGAATATAGATGTAGAGGATAGT
AGTGTACCAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig10:223102..225811-

>mRNA_F-serratus_M_contig10.56.1 ID=mRNA_F-serratus_M_contig10.56.1|Name=mRNA_F-serratus_M_contig10.56.1|organism=Fucus serratus male|type=CDS|length=882bp|location=Sequence derived from alignment at F-serratus_M_contig10:223102..225811- (Fucus serratus male)
ATGCACACGTTCCCTGCGTACGACGAGTCTCGGCGAACGTGGGTGGAGAG
CACGTGCACGCGTTGCCCGGCCACAACGGCCCTGCTGCGGCGCCTGCCCA
ACGTTCGTACTGCGCTCTTCTCTCGGCTTGGGAGTGGGTCGCGTATCGCG
GGACATCAGGGCTGGGCCGACCTCGCGAATCACGTCCTGCGATGCCACCT
ACCGCTGAGGGTGCCCTCGGACGGCCCGTGTGGCCTCTGGGTGGATGGAG
AGATGCACACGTTCCCTGCGTACGACGAGTCTCGGCGAACGTGGGTGGAG
AGCACGTGCACGCGTTGCCCGGCCACAACGGCCCTGCTGCGGCGCCTGCC
CAACGTTCGTACTGCGCTCTTCTCTCGGCTTGGGAGTGGGTCGCGTATCG
CGGGACATCAGGGCTGGGCCGACCTCGCGAATCACGTCCTGCGATGCCAC
CTACCGCTGAGGGTGCCCTCGGACGGCCCGTGTGGCCTCTGGGTGGATGG
AGAGATTCGCCACCACGCGGAAGGCGAAATAATTGTTTTCGACGACAGCA
AGCTGCACAAGGCGTTCAATGATTCCACCGGAGACAGGCTTGTACTGATC
GTCGACATGCTCAGACCATCGTGGATACCCCTGGGAATCGCTGAAGGGGA
GCACACGCCAGAGCTTGACGCTTTCATCGACGCCTTCAGATAGATTCGCC
ACCACGCGGAAGGCGAAATAATTGTTTTCGACGACAGCAAGCTGCACAAG
GCGTTCAATGATTCCACCGGAGACAGGCTTGTACTGATCGTCGACATGCT
CAGACCATCGTGGATACCCCTGGGAATCGCTGAAGGGGAGCACACGCCAG
AGCTTGACGCTTTCATCGACGCCTTCAGATAG
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