mRNA_F-serratus_M_contig10.51.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig10.51.1
Unique NamemRNA_F-serratus_M_contig10.51.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig10.51.1 vs. uniprot
Match: A0A6H5KFE2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFE2_9PHAE)

HSP 1 Score: 188 bits (477), Expect = 2.600e-53
Identity = 99/177 (55.93%), Postives = 130/177 (73.45%), Query Frame = 2 
Query:  119 KKPGIYETRVVRRYFERHRGKTEAASEISDHVQQLKHLRTYAEDALVLGEGSRTGMPQAVPRGGPGEGREAFIVAVAPEASCEEVSQLEMERKKILQGCRDGFAACYELFGGGALS---SRRDTGSGDGGGHDLYAGARVRSGAEVALEYFPDSILAVSTDLDGAYFQPGHVIGKQR 640
            KKP IYE+RVV+++FE+H    +  S IS+++QQL+HLR YAEDALVLGEGSRTG+ QA P+GG GEGREAF++A+AP A+ +EV QLEM+R+ ILQGCRDGFAACY+ F G A S   +  D G+      D+  G   RSGAE+ALEYFPDS+L+   D++  Y + GH+I   +
Sbjct:   34 KKPSIYESRVVKKFFEQH-DDPDTTSGISNYLQQLEHLRVYAEDALVLGEGSRTGVAQAAPKGGAGEGREAFLLAIAPAAASKEVGQLEMDRRVILQGCRDGFAACYDAFVGPAKSLAAAAADDGA------DVV-GPLARSGAEMALEYFPDSLLSTLADINATYLETGHLISDNQ 202
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BLAST of mRNA_F-serratus_M_contig10.51.1 vs. uniprot
Match: D8LUD0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LUD0_ECTSI)

HSP 1 Score: 186 bits (473), Expect = 6.430e-49
Identity = 99/177 (55.93%), Postives = 129/177 (72.88%), Query Frame = 2 
Query:  119 KKPGIYETRVVRRYFERHRGKTEAASEISDHVQQLKHLRTYAEDALVLGEGSRTGMPQAVPRGGPGEGREAFIVAVAPEASCEEVSQLEMERKKILQGCRDGFAACYELFGGGALS---SRRDTGSGDGGGHDLYAGARVRSGAEVALEYFPDSILAVSTDLDGAYFQPGHVIGKQR 640
            KKP IYE+RVV+++FE+H       S IS+++QQL+HLR YAEDALVLGEGSR+G+ QA P+GG GEGREAF++A+AP A+ +EV QLEM+R+ ILQGCRDGFAACY+ F G A S   +  D G+      D+  G   RSGAEVALEYFPDS+L+   D++  Y + GH+I   +
Sbjct:  567 KKPSIYESRVVKKFFEQHDDPI-TTSGISNYLQQLEHLRVYAEDALVLGEGSRSGVAQAAPKGGAGEGREAFLLAIAPAAASKEVGQLEMDRRVILQGCRDGFAACYDAFVGPAKSLAAAAADDGA------DVV-GPLARSGAEVALEYFPDSLLSTPADINATYLETGHLISDNQ 735
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig10.51.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KFE2_9PHAE2.600e-5355.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LUD0_ECTSI6.430e-4955.93Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig10contigF-serratus_M_contig10:62359..65785 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score122.9
Seed ortholog evalue1.1e-25
Seed eggNOG ortholog2880.D8LUD0
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Patatin-like phospholipase
EggNOG OGs29GN1@1,2RPUA@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size1135
Cds size390
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig10.51.1prot_F-serratus_M_contig10.51.1Fucus serratus malepolypeptideF-serratus_M_contig10 62821..64586 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928781.4611933-UTR-F-serratus_M_contig10:62358..628201622928781.4611933-UTR-F-serratus_M_contig10:62358..62820Fucus serratus maleUTRF-serratus_M_contig10 62359..62820 -
1690962567.8256903-UTR-F-serratus_M_contig10:62358..628201690962567.8256903-UTR-F-serratus_M_contig10:62358..62820Fucus serratus maleUTRF-serratus_M_contig10 62359..62820 -
1622928781.5283546-UTR-F-serratus_M_contig10:64586..646491622928781.5283546-UTR-F-serratus_M_contig10:64586..64649Fucus serratus maleUTRF-serratus_M_contig10 64587..64649 -
1690962567.8691707-UTR-F-serratus_M_contig10:64586..646491690962567.8691707-UTR-F-serratus_M_contig10:64586..64649Fucus serratus maleUTRF-serratus_M_contig10 64587..64649 -
1622928781.5439847-UTR-F-serratus_M_contig10:65565..657851622928781.5439847-UTR-F-serratus_M_contig10:65565..65785Fucus serratus maleUTRF-serratus_M_contig10 65566..65785 -
1690962567.877041-UTR-F-serratus_M_contig10:65565..657851690962567.877041-UTR-F-serratus_M_contig10:65565..65785Fucus serratus maleUTRF-serratus_M_contig10 65566..65785 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928781.4775162-CDS-F-serratus_M_contig10:62820..629621622928781.4775162-CDS-F-serratus_M_contig10:62820..62962Fucus serratus maleCDSF-serratus_M_contig10 62821..62962 -
1690962567.8353918-CDS-F-serratus_M_contig10:62820..629621690962567.8353918-CDS-F-serratus_M_contig10:62820..62962Fucus serratus maleCDSF-serratus_M_contig10 62821..62962 -
1622928781.4929507-CDS-F-serratus_M_contig10:63503..636641622928781.4929507-CDS-F-serratus_M_contig10:63503..63664Fucus serratus maleCDSF-serratus_M_contig10 63504..63664 -
1690962567.8445306-CDS-F-serratus_M_contig10:63503..636641690962567.8445306-CDS-F-serratus_M_contig10:63503..63664Fucus serratus maleCDSF-serratus_M_contig10 63504..63664 -
1622928781.511461-CDS-F-serratus_M_contig10:64499..645861622928781.511461-CDS-F-serratus_M_contig10:64499..64586Fucus serratus maleCDSF-serratus_M_contig10 64500..64586 -
1690962567.8560266-CDS-F-serratus_M_contig10:64499..645861690962567.8560266-CDS-F-serratus_M_contig10:64499..64586Fucus serratus maleCDSF-serratus_M_contig10 64500..64586 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig10.51.1

>prot_F-serratus_M_contig10.51.1 ID=prot_F-serratus_M_contig10.51.1|Name=mRNA_F-serratus_M_contig10.51.1|organism=Fucus serratus male|type=polypeptide|length=130bp
MPQAVPRGGPGEGREAFIVAVAPEASCEEVSQLEMERKKILQGCRDGFAA
CYELFGGGALSSRRDTGSGDGGGHDLYAGARVRSGAEVALEYFPDSILAV
STDLDGAYFQPGHVIGKQRVPPTVLLTSP*
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mRNA from alignment at F-serratus_M_contig10:62359..65785-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig10.51.1 ID=mRNA_F-serratus_M_contig10.51.1|Name=mRNA_F-serratus_M_contig10.51.1|organism=Fucus serratus male|type=mRNA|length=3427bp|location=Sequence derived from alignment at F-serratus_M_contig10:62359..65785- (Fucus serratus male)
GCTCCAGCAGAGCAGCACCGCTATTCGTTATTATCAAGCATTAATATAGT
TGTTGATAGTATCTATCTCGGCCTGACGATTCCGTCGTGTCGTGTCGCGT
CTCGCTGCCCCCGGGTAAAAGAAACCAGGCATCTACGAGACCCGAGTCGT
GAGGAGGTACTTCGAGCGTCATCGCGGGAAAACGGAAGCGGCTTCTGAGA
TAAGCGATCACGTGCAGCAGGCAAGCGGGAGGAGAGTAGCGAAGGGGTCG
AGAGAGGCTAGTACTACTCATATCAATACTGAGGGCGGGTATTAGATTTT
TAAAAAAGCGCCTGGACTTGGAACGTGGAACTTCGAATCCCTCTATGATT
GGCCAACGACAAAAAATAATTTTCAATAATTTTCCTGGAAAGAGGTTCCG
CCGCCGCAGTTCCCTTTTTCTTGTTCCCGCCGCACAAATCATTTTAATCA
TCACGTTCCTTAACATTAATGAAAAGCTCACAAGGAACGGGCTGGTCGAG
GGCAAAAGGCTCAGAAATTTCCAAAACGGCGGTCCTTAGGCGAAATAAAA
ATTTCCATGCGCCTATACCTTCTGAGTCGTTGTGTCGATGTTCTCAAATC
GTGGCTCCACCAGACTTTTCGCCTAAAACCAGGTTCGACAGTTCAGCATT
CCAGCTTTATTTATTTTTTTCTGGGCACAAGTAGTGTATAGAACAGGGAA
CGAGGAATGGCAAGTAATTCGAAGTTCCACGTTCCATGTCCCATGCGCAT
TTTTTTTATCTAATACCCGCCCTGAGTATTTATACTAAGAAAGGGGAAGA
ACATACAAAAATATACATTTATATTTCGAACTACCAAACTACTGGGTAGT
ATAAATCGACGTTTGGCACACGATAACCGCAGGCTGGCGTAGCATAAATC
GACGTTTGACGCACGATAACCGCAGGCTGGCTTCTCCCAAGCCTTCGAGG
CGGCGTTTTTTTTTCCCCCGCAATATTCCTTCTCTTGAGTTTTACAACAT
AAAATCAAACACAGGTTTGTTTTCGCGTAGGTGTTCAGGCCGTAACAAAG
CAATTCTTGCTGCGACAGGATGTATTTTTTCTTCCTTTAAAGTTAAACGT
GTGCTGCCTGCTACTGCCGTATCTTGCCATCCACAGCTGAAACACCTTCG
TACTTACGCCGAGGATGCGCTGGTGCTCGGGGAGGGTTCTCGCACGGGAA
TGCCGCAGGCGGTTCCGAGAGGGGGGCCGGGCGAGGGGCGCGAGGCATTC
ATTGTGGCGGTGGCGCCGGAGGCATCGTGCGAAGAGGTACTCGCTGGGTC
GTCCTCCTTATGCCACGCAATATACTTTATATATATAGAGAGAGAGGGAG
AGTTTTTTATCCTCGAGATGTGGAGGCAGGTGGGAAGGGGGGCGTTGCAG
ACTGCTACGCGCCAGGTGATATTGACGTTAGCCGTGAGAGTCGAACGAAA
TACGCACTATAAATCGCCCGGTATTTTTGTTCGTTCCGCGACAACAGCAG
ACGCTTTTGTAGAGCCCATTCATTTGAGGTGGGGCGGCGGGGGAGGCGCT
CTCTCTGCGCTACGTAGAGCTTCTCCGGTCGTGTCTTGTCCTTGTCTTGT
GCGAAAGAAAGCAAGGGCCAATGGGAATGGTAACATCGTTGGTGGTGCAC
GTCCAGACCGCAAACGCAAACGAGTACGGTACTGTTTTTGAAGAAAATTC
GGAACGCATCTAAACTTTCTGAGCATCCTACAGACGGGGAGAAAAATTGT
CAAAACGTTTAGACGGGAACATAGACTGCCTAGACAAAACCTCTTGATGG
CATTTAAGCGGGTTCCCCGTGGTAGTAGAGTAGCATAGGGTCAACAATAT
GTACTGCATCGGAATTCAGTTTTCTGAAGAGGATACGATGGGTTATTCTT
CCCTATTTTTTCTCGCCATAACCACCCTCCCCCCCCCTCCCGACAAAGTG
TAAGGGTGACTATGACTACATCGGGGTGCTATAGTGTGTACCGTACGACG
CGTCTTGAAAGTCGAAGAAACCAATAAAGACGGCCTAATATGAGCGTCTG
GGTAACTACGATAGTTGTTGCACGCCGCGCGCCTGTCTTCCTCCCCTCCT
CGACGCTCTCGCGGGAAAAAGGTGAGCCAGCTGGAGATGGAACGTAAGAA
GATACTCCAGGGCTGTCGGGACGGGTTTGCGGCTTGTTATGAACTTTTCG
GGGGGGGCGCGTTGTCGTCGAGAAGGGACACCGGGTCCGGAGATGGCGGG
GGCCACGACCTCTACGCGGGCGCTAGGGTCAGGTAAAGCAGTTCCCGAAA
GGTTTTTCTTCCTCACCCATTGTAGCGCGCGCGACCGTTGCGCATCTGGT
GTTAAGGAATTATTTTGATAAATAATCACAGCATGGTTGGTGGGAGTTAC
ACAAGACATCGGCATTCCGCCTCCGGTCGCTTTATAGCATATCTTATTTG
CAAATCTCGTGCGTGTTCCATACGGGGTATCTGTCCGACTTCTACGCGAA
AACGTACATTTGAAACCGAATAATGGTTGCTGCTTTTGACACGGTTAGCG
GTTGACCCCGGTGAATTACGATAGATTGGTTCTCGGAGGTGGAGCAATCA
AAAATATGTCCCCTCGTTGTCCGCCGGACAGATTGAACCTCGGCGGCGGG
CCTCTCATCGCGCGCCATCCCCAACCCCCGCCTGACCCTTGTAGTAGCCT
TAGTTGTCACCCAAGCGTAGACTAATATAATAAAATGTTGATCCTCACTG
GATGTCCGTTCGTTTTACTCCGCCGTCCATCCCCTCTCTCTCTCTACCCC
GGGGCCCTACAAAAACCAAACAGATCGGGTGCAGAGGTGGCGCTCGAATA
CTTCCCCGACTCCATACTTGCCGTCTCCACCGATCTGGACGGGGCCTATT
TCCAGCCTGGGCATGTGATCGGGAAACAGCGGGTACCACCCACAGTTTTG
TTAACGTCACCATAATCCATCACTGCTACTCTTGCCTGCCATGTACGGTG
CTGTTTATATCCCGACGATTTGAGAGAAAGAGAGGCGGAGGCGTTCTTAA
GAGGAGGCCGCGGCGAGGGGAAACAGCGGGGACCACAAATAATTTTGACG
TCGCTTTATCATCCATCACACTATTAATACTACTCTTGCCTACGAAGTAC
TGTGTATCCCGATGATTTGAGAAACAGAGGCGGTAGAGGCGGTAGCGTCC
CGGGAGGAGCCCGCGGCAAGAGCACTTGGGTCTTCCGAAGGGAGATCGGG
GCGAGCAGCGCAACAGCGACGGGCTCTTCCACTTTGGCGAAGGCTAACGT
TGATGGCGACGTGTGCAGCCGTGTGTTTGTGATTGTATTAACAGTCGCCT
CAGGAACTGATTGATGTACGGTGTGATTGGTGTATGATGTGATTGATGTA
TGGTGTGAGGGTACAGCCTCGCCGCGC
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Coding sequence (CDS) from alignment at F-serratus_M_contig10:62359..65785-

>mRNA_F-serratus_M_contig10.51.1 ID=mRNA_F-serratus_M_contig10.51.1|Name=mRNA_F-serratus_M_contig10.51.1|organism=Fucus serratus male|type=CDS|length=780bp|location=Sequence derived from alignment at F-serratus_M_contig10:62359..65785- (Fucus serratus male)
ATGCCGCAGGCGGTTCCGAGAGGGGGGCCGGGCGAGGGGCGCGAGGCATT
CATTGTGGCGGTGGCGCCGGAGGCATCGTGCGAAGAGATGCCGCAGGCGG
TTCCGAGAGGGGGGCCGGGCGAGGGGCGCGAGGCATTCATTGTGGCGGTG
GCGCCGGAGGCATCGTGCGAAGAGGTGAGCCAGCTGGAGATGGAACGTAA
GAAGATACTCCAGGGCTGTCGGGACGGGTTTGCGGCTTGTTATGAACTTT
TCGGGGGGGGCGCGTTGTCGTCGAGAAGGGACACCGGGTCCGGAGATGGC
GGGGGCCACGACCTCTACGCGGGCGCTAGGGTCAGGTGAGCCAGCTGGAG
ATGGAACGTAAGAAGATACTCCAGGGCTGTCGGGACGGGTTTGCGGCTTG
TTATGAACTTTTCGGGGGGGGCGCGTTGTCGTCGAGAAGGGACACCGGGT
CCGGAGATGGCGGGGGCCACGACCTCTACGCGGGCGCTAGGGTCAGATCG
GGTGCAGAGGTGGCGCTCGAATACTTCCCCGACTCCATACTTGCCGTCTC
CACCGATCTGGACGGGGCCTATTTCCAGCCTGGGCATGTGATCGGGAAAC
AGCGGGTACCACCCACAGTTTTGTTAACGTCACCATAAATCGGGTGCAGA
GGTGGCGCTCGAATACTTCCCCGACTCCATACTTGCCGTCTCCACCGATC
TGGACGGGGCCTATTTCCAGCCTGGGCATGTGATCGGGAAACAGCGGGTA
CCACCCACAGTTTTGTTAACGTCACCATAA
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