mRNA_F-serratus_M_contig1.45.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1.45.1
Unique NamemRNA_F-serratus_M_contig1.45.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1.45.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1contigF-serratus_M_contig1:1691486..1692066 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size285
Cds size183
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1.45.1prot_F-serratus_M_contig1.45.1Fucus serratus malepolypeptideF-serratus_M_contig1 1691492..1691970 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928772.3464582-UTR-F-serratus_M_contig1:1691485..16914911622928772.3464582-UTR-F-serratus_M_contig1:1691485..1691491Fucus serratus maleUTRF-serratus_M_contig1 1691486..1691491 +
1690962560.7853734-UTR-F-serratus_M_contig1:1691485..16914911690962560.7853734-UTR-F-serratus_M_contig1:1691485..1691491Fucus serratus maleUTRF-serratus_M_contig1 1691486..1691491 +
1622928772.3857079-UTR-F-serratus_M_contig1:1691970..16920661622928772.3857079-UTR-F-serratus_M_contig1:1691970..1692066Fucus serratus maleUTRF-serratus_M_contig1 1691971..1692066 +
1690962560.8285418-UTR-F-serratus_M_contig1:1691970..16920661690962560.8285418-UTR-F-serratus_M_contig1:1691970..1692066Fucus serratus maleUTRF-serratus_M_contig1 1691971..1692066 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928772.3612068-CDS-F-serratus_M_contig1:1691491..16915361622928772.3612068-CDS-F-serratus_M_contig1:1691491..1691536Fucus serratus maleCDSF-serratus_M_contig1 1691492..1691536 +
1690962560.7979243-CDS-F-serratus_M_contig1:1691491..16915361690962560.7979243-CDS-F-serratus_M_contig1:1691491..1691536Fucus serratus maleCDSF-serratus_M_contig1 1691492..1691536 +
1622928772.3746436-CDS-F-serratus_M_contig1:1691832..16919701622928772.3746436-CDS-F-serratus_M_contig1:1691832..1691970Fucus serratus maleCDSF-serratus_M_contig1 1691833..1691970 +
1690962560.8179393-CDS-F-serratus_M_contig1:1691832..16919701690962560.8179393-CDS-F-serratus_M_contig1:1691832..1691970Fucus serratus maleCDSF-serratus_M_contig1 1691833..1691970 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1.45.1

>prot_F-serratus_M_contig1.45.1 ID=prot_F-serratus_M_contig1.45.1|Name=mRNA_F-serratus_M_contig1.45.1|organism=Fucus serratus male|type=polypeptide|length=61bp
MSYSVTKKMRNNDFEGAHRASQMAKRLALAAIAIGIIAQVSGWTSYSETN
YGNNRSGNLR*
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mRNA from alignment at F-serratus_M_contig1:1691486..1692066+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1.45.1 ID=mRNA_F-serratus_M_contig1.45.1|Name=mRNA_F-serratus_M_contig1.45.1|organism=Fucus serratus male|type=mRNA|length=581bp|location=Sequence derived from alignment at F-serratus_M_contig1:1691486..1692066+ (Fucus serratus male)
GTCATCATGTCGTATAGCGTCACGAAGAAGATGCGGAACAACGACTTCGA
GGTGGGTGCCGCCGGGACTTTACCTACAAGTATGGTATGTATTCTACAGG
ATTAGATTGGAAGAACTGCGAACGTCATTCAAATACTTATAGGTTCTCTG
ATTCGCACCTGTTGGTCTAACTCGCAAGACGTGCCTGTTAGACGTTTCCT
AGGCTTTACCTCCACCGCCTTCGCTGGAGTCTTGTGAGTTTTTTTGTTGG
ACAAAGTTGTACTACAAGTCCGATTATTGCCCCGCCTCTGCATATAGTGA
CTGATCTCTTGATGATTTTCGTTTGTCTTTCCCTCTCTCTTGCTCAGGGA
GCCCATAGAGCTTCTCAAATGGCAAAGAGGTTAGCGCTGGCAGCAATCGC
CATCGGGATAATCGCGCAGGTGTCCGGTTGGACGTCGTATTCCGAGACCA
ACTATGGCAACAACCGGTCGGGCAATTTGCGATAGTCTACAGGCGGCAAC
TCATAATAATATAGAATATACGGTAATAAAGCAAAAACCAAGAGTTGGGC
AACGACAAAAATCGCATGCCATATGGATGGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1:1691486..1692066+

>mRNA_F-serratus_M_contig1.45.1 ID=mRNA_F-serratus_M_contig1.45.1|Name=mRNA_F-serratus_M_contig1.45.1|organism=Fucus serratus male|type=CDS|length=366bp|location=Sequence derived from alignment at F-serratus_M_contig1:1691486..1692066+ (Fucus serratus male)
ATGTCGTATAGCGTCACGAAGAAGATGCGGAACAACGACTTCGAGATGTC
GTATAGCGTCACGAAGAAGATGCGGAACAACGACTTCGAGGGAGCCCATA
GAGCTTCTCAAATGGCAAAGAGGTTAGCGCTGGCAGCAATCGCCATCGGG
ATAATCGCGCAGGTGTCCGGTTGGACGTCGTATTCCGAGACCAACTATGG
CAACAACCGGTCGGGCAATTTGCGATAGGGAGCCCATAGAGCTTCTCAAA
TGGCAAAGAGGTTAGCGCTGGCAGCAATCGCCATCGGGATAATCGCGCAG
GTGTCCGGTTGGACGTCGTATTCCGAGACCAACTATGGCAACAACCGGTC
GGGCAATTTGCGATAG
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