mRNA_F-serratus_M_contig1.1.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1.1.1
Unique NamemRNA_F-serratus_M_contig1.1.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1contigF-serratus_M_contig1:20975..21422 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size449
Cds size390
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928772.4235945-CDS-F-serratus_M_contig1:20974..213641622928772.4235945-CDS-F-serratus_M_contig1:20974..21364Fucus serratus maleCDSF-serratus_M_contig1 20975..21364 +
1690962560.8381326-CDS-F-serratus_M_contig1:20974..213641690962560.8381326-CDS-F-serratus_M_contig1:20974..21364Fucus serratus maleCDSF-serratus_M_contig1 20975..21364 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928772.4366176-UTR-F-serratus_M_contig1:21364..214221622928772.4366176-UTR-F-serratus_M_contig1:21364..21422Fucus serratus maleUTRF-serratus_M_contig1 21365..21422 +
1690962560.853629-UTR-F-serratus_M_contig1:21364..214221690962560.853629-UTR-F-serratus_M_contig1:21364..21422Fucus serratus maleUTRF-serratus_M_contig1 21365..21422 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1.1.1prot_F-serratus_M_contig1.1.1Fucus serratus malepolypeptideF-serratus_M_contig1 20975..21364 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1.1.1

>prot_F-serratus_M_contig1.1.1 ID=prot_F-serratus_M_contig1.1.1|Name=mRNA_F-serratus_M_contig1.1.1|organism=Fucus serratus male|type=polypeptide|length=130bp
AIFTLVKVYIIVSDVSCCFGLGLVACRVIPSNSKVITWRKHCRRDRDIPD
RGSVCGGFHRFRRRRRKHSQPTLAPQQQSTEKHRRFAPDASCRRSSGHFY
STHGKATLCVKQSNASGGLKGRWARLGNG*
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mRNA from alignment at F-serratus_M_contig1:20975..21422+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1.1.1 ID=mRNA_F-serratus_M_contig1.1.1|Name=mRNA_F-serratus_M_contig1.1.1|organism=Fucus serratus male|type=mRNA|length=448bp|location=Sequence derived from alignment at F-serratus_M_contig1:20975..21422+ (Fucus serratus male)
GCCATCTTCACACTGGTCAAGGTTTATATCATAGTAAGTGATGTCTCCTG
TTGTTTTGGGCTCGGGCTCGTTGCTTGTAGAGTAATTCCAAGTAACAGTA
AAGTCATCACCTGGCGAAAGCACTGCCGACGAGATCGCGACATCCCAGAT
CGAGGGTCCGTCTGTGGCGGTTTCCACCGTTTCAGACGAAGACGACGAAA
GCACTCCCAACCTACTCTGGCACCCCAGCAGCAGAGCACAGAGAAGCACC
GAAGATTTGCTCCTGATGCTTCTTGTAGAAGAAGCAGCGGTCATTTTTAC
TCTACTCATGGGAAGGCAACCCTATGTGTGAAACAGTCAAATGCCAGTGG
TGGACTCAAGGGCCGTTGGGCTCGTCTTGGCAACGGATAACCGCGAGCTG
ACTGTTTCTGCGGTACAGCCCGAAATCGGTCAGGGCCGTGACGAATCG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1:20975..21422+

>mRNA_F-serratus_M_contig1.1.1 ID=mRNA_F-serratus_M_contig1.1.1|Name=mRNA_F-serratus_M_contig1.1.1|organism=Fucus serratus male|type=CDS|length=780bp|location=Sequence derived from alignment at F-serratus_M_contig1:20975..21422+ (Fucus serratus male)
GCCATCTTCACACTGGTCAAGGTTTATATCATAGTAAGTGATGTCTCCTG
TTGTTTTGGGCTCGGGCTCGTTGCTTGTAGAGTAATTCCAAGTAACAGTA
AAGTCATCACCTGGCGAAAGCACTGCCGACGAGATCGCGACATCCCAGAT
CGAGGGTCCGTCTGTGGCGGTTTCCACCGTTTCAGACGAAGACGACGAAA
GCACTCCCAACCTACTCTGGCACCCCAGCAGCAGAGCACAGAGAAGCACC
GAAGATTTGCTCCTGATGCTTCTTGTAGAAGAAGCAGCGGTCATTTTTAC
TCTACTCATGGGAAGGCAACCCTATGTGTGAAACAGTCAAATGCCAGTGG
TGGACTCAAGGGCCGTTGGGCTCGTCTTGGCAACGGATAAGCCATCTTCA
CACTGGTCAAGGTTTATATCATAGTAAGTGATGTCTCCTGTTGTTTTGGG
CTCGGGCTCGTTGCTTGTAGAGTAATTCCAAGTAACAGTAAAGTCATCAC
CTGGCGAAAGCACTGCCGACGAGATCGCGACATCCCAGATCGAGGGTCCG
TCTGTGGCGGTTTCCACCGTTTCAGACGAAGACGACGAAAGCACTCCCAA
CCTACTCTGGCACCCCAGCAGCAGAGCACAGAGAAGCACCGAAGATTTGC
TCCTGATGCTTCTTGTAGAAGAAGCAGCGGTCATTTTTACTCTACTCATG
GGAAGGCAACCCTATGTGTGAAACAGTCAAATGCCAGTGGTGGACTCAAG
GGCCGTTGGGCTCGTCTTGGCAACGGATAA
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