mRNA_F-distichus_contig105029.435.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig105029.435.1
Unique NamemRNA_F-distichus_contig105029.435.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
BLAST of mRNA_F-distichus_contig105029.435.1 vs. uniprot
Match: A0A6H5L299_9PHAE (Beta-galactosidase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L299_9PHAE)

HSP 1 Score: 148 bits (374), Expect = 1.020e-39
Identity = 65/84 (77.38%), Postives = 69/84 (82.14%), Query Frame = 1
Query:    1 SGTWKFRLVGGVAETPAGFETPEFGDRSWEDIDVPGHWQLQDAGASDPPIYTNTVYPFPNRPPYAPRSNPTGLYRRSLTLPSEW 252
            SGTWKF LV GV+ +P GFE P F D SWEDIDVPGHWQLQDAG+ DPPIYTNT YPFPN PPYAPR NPTGLYRR   LP+EW
Sbjct:  133 SGTWKFLLVSGVSASPGGFEDPGFSDGSWEDIDVPGHWQLQDAGSRDPPIYTNTNYPFPNHPPYAPRENPTGLYRRRFALPAEW 216          
BLAST of mRNA_F-distichus_contig105029.435.1 vs. uniprot
Match: A0A2R6WIM3_MARPO (Beta-galactosidase n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6WIM3_MARPO)

HSP 1 Score: 95.5 bits (236), Expect = 4.370e-21
Identity = 44/84 (52.38%), Postives = 50/84 (59.52%), Query Frame = 1
Query:    1 SGTWKFRLVGGVAETPAGFETPEFGDRSWEDIDVPGHWQLQDAGASDPPIYTNTVYPFPNRPPYAPRSNPTGLYRRSLTLPSEW 252
            SG WKF L     E P GF+  +F D SW  + VP +WQ+      D PIYTN VYPFP  PP  P  NPTG YRRS  LP+EW
Sbjct:  167 SGYWKFHLAPKPREVPLGFQLVDFDDGSWSSLPVPSNWQMH---GFDQPIYTNIVYPFPINPPKVPEQNPTGCYRRSFKLPTEW 247          
BLAST of mRNA_F-distichus_contig105029.435.1 vs. uniprot
Match: A0A1V6KG37_9DELT (Beta-galactosidase n=2 Tax=Bacteria TaxID=2 RepID=A0A1V6KG37_9DELT)

HSP 1 Score: 94.4 bits (233), Expect = 1.110e-20
Identity = 42/80 (52.50%), Postives = 54/80 (67.50%), Query Frame = 1
Query:    1 SGTWKFRLVGGVAETPAGFETPEFGDRSWEDIDVPGHWQLQDAGASDPPIYTNTVYPFPNRPPYAPRSNPTGLYRRSLTL 240
            +G+WKF  +     +P GFE P+F D +WEDI+VP HWQL+  G    P YT+  YPFP RPP+ PR+NPTG+YRR   L
Sbjct:   52 NGSWKFLFLEAPELSPFGFEKPDFDDGAWEDIEVPSHWQLKGHGR---PHYTDLYYPFPVRPPFVPRANPTGIYRRQFFL 128          
BLAST of mRNA_F-distichus_contig105029.435.1 vs. uniprot
Match: A0A7K1Y1D7_9SPHI (Beta-galactosidase n=1 Tax=Pedobacter sp. HMF7056 TaxID=2695274 RepID=A0A7K1Y1D7_9SPHI)

HSP 1 Score: 92.8 bits (229), Expect = 3.850e-20
Identity = 44/85 (51.76%), Postives = 56/85 (65.88%), Query Frame = 1
Query:    1 SGTWKFRLVGGVAETPAGFETPEFGDRSWEDIDVPGHWQLQDAGASDPPIYTNTVYPFPNRPPYAPRS-NPTGLYRRSLTLPSEW 252
            +GTWKF+ V    +TPA F  P +    W+DI VPG+WQLQ  G  DPP++TN  YPFP  PP  P++ NPTGLYR + T+P  W
Sbjct:   68 NGTWKFKWVRTPLKTPADFFMPGYNVSRWDDIRVPGNWQLQ--GDYDPPVFTNIRYPFPADPPRVPKTDNPTGLYRTTFTIPGGW 150          
BLAST of mRNA_F-distichus_contig105029.435.1 vs. uniprot
Match: M0LXZ5_9EURY (Beta-galactosidase n=2 Tax=Halococcus TaxID=2249 RepID=M0LXZ5_9EURY)

HSP 1 Score: 92.4 bits (228), Expect = 5.250e-20
Identity = 43/84 (51.19%), Postives = 51/84 (60.71%), Query Frame = 1
Query:    1 SGTWKFRLVGGVAETPAGFETPEFGDRSWEDIDVPGHWQLQDAGASDPPIYTNTVYPFPNRPPYAPRSNPTGLYRRSLTLPSEW 252
            +G W F LV   A+TP GF  P+F D  W+++ VP +WQ    G    P YTN VYPFP  PP  P  NPTGLYRRS T+P  W
Sbjct:   46 NGFWNFSLVETPADTPDGFHDPDFDDGDWDELRVPRNWQTAGHGE---PHYTNVVYPFPVDPPNVPTENPTGLYRRSFTIPEGW 126          
BLAST of mRNA_F-distichus_contig105029.435.1 vs. uniprot
Match: A0A812UZX4_SYMMI (Beta-galactosidase n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812UZX4_SYMMI)

HSP 1 Score: 92.4 bits (228), Expect = 5.290e-20
Identity = 42/89 (47.19%), Postives = 55/89 (61.80%), Query Frame = 1
Query:    4 GTWKFRLVGGVAETPAGFETPEFGDRSWEDIDVPGHWQLQDA-GASDPPIYTNTVYPFPNR-----PPYAPRSNPTGLYRRSLTLPSEW 252
            G W+F+ V    +TPA F  P+  D+SW D+ VPG WQ+Q   G  D PIYTN + P+  R     PP+ P+ NPTGLYR++ TLP  W
Sbjct:  421 GEWRFKTVPAPEKTPANFAKPDLNDKSWHDLTVPGCWQMQGVTGKDDQPIYTNVLMPWFGRTPAIEPPFVPKDNPTGLYRKTFTLPKGW 509          
BLAST of mRNA_F-distichus_contig105029.435.1 vs. uniprot
Match: UPI0003B56E39 (DUF4981 domain-containing protein n=1 Tax=Ruania albidiflava TaxID=366586 RepID=UPI0003B56E39)

HSP 1 Score: 90.9 bits (224), Expect = 1.820e-19
Identity = 46/94 (48.94%), Postives = 55/94 (58.51%), Query Frame = 1
Query:    1 SGTWKFRLVGGVA-----ETPAG-----FETPEFGDRSWEDIDVPGHWQLQDAGASDPPIYTNTVYPFPNRPPYAPRSNPTGLYRRSLTLPSEW 252
            SG W+FRL+ GV        PAG     F  P++ D SWE I VP HW L   G    PIYTN  YPFP   P+ P  NPTG YRRS+T+P++W
Sbjct:   39 SGPWQFRLLPGVPGXXXXXAPAGEAADAFAAPDYDDSSWEAIAVPSHWVLTGEGKYGNPIYTNVQYPFPIDVPHVPDENPTGEYRRSITVPADW 132          
BLAST of mRNA_F-distichus_contig105029.435.1 vs. uniprot
Match: UPI0008DA056E (DUF4981 domain-containing protein n=1 Tax=Bacteroides ihuae TaxID=1852362 RepID=UPI0008DA056E)

HSP 1 Score: 90.5 bits (223), Expect = 2.490e-19
Identity = 44/85 (51.76%), Postives = 50/85 (58.82%), Query Frame = 1
Query:    1 SGTWKFRLVGGVAETPAGFETPEFGDRSWEDIDVPGHWQLQDAGASDPPIYTNTVYPFPNRPPYAPRS-NPTGLYRRSLTLPSEW 252
            +GTWKFR V   AE P  F   E+    W+DI VPG+W+LQ  G    PIYTN  YP P  PPY P S NP G Y+RS  LP  W
Sbjct:   69 NGTWKFRWVKIPAERPVDFYKEEYNTSDWDDIKVPGNWELQGYGI---PIYTNVAYPHPKNPPYIPHSDNPVGSYKRSFDLPQTW 150          
BLAST of mRNA_F-distichus_contig105029.435.1 vs. uniprot
Match: A0A286EUK2_9ACTN (Beta-galactosidase n=1 Tax=Jatrophihabitans sp. GAS493 TaxID=1907575 RepID=A0A286EUK2_9ACTN)

HSP 1 Score: 90.1 bits (222), Expect = 3.390e-19
Identity = 43/84 (51.19%), Postives = 52/84 (61.90%), Query Frame = 1
Query:    1 SGTWKFRLVGGVAETPAGFETPEFGDRSWEDIDVPGHWQLQDAGASD----PPIYTNTVYPFPNRPPYAPRSNPTGLYRRSLTL 240
            +GTW+FR      +   GFE PEF D +W++I VPGHWQLQ  G  D     P YTN +YPFP  PP+ P  NPTG YRR+  L
Sbjct:   34 TGTWRFRWSPTADDPSTGFERPEFDDTAWDEIAVPGHWQLQ--GGDDRRYGSPNYTNVLYPFPVEPPFVPDENPTGEYRRTFEL 115          
BLAST of mRNA_F-distichus_contig105029.435.1 vs. uniprot
Match: A0A455SCQ0_9CHLR (Beta-galactosidase n=2 Tax=Thermosporothrix TaxID=768650 RepID=A0A455SCQ0_9CHLR)

HSP 1 Score: 89.0 bits (219), Expect = 8.650e-19
Identity = 41/84 (48.81%), Postives = 49/84 (58.33%), Query Frame = 1
Query:    1 SGTWKFRLVGGVAETPAGFETPEFGDRSWEDIDVPGHWQLQDAGASDPPIYTNTVYPFPNRPPYAPRSNPTGLYRRSLTLPSEW 252
            +G WKF         PAGF    F   +W++I VPG WQLQ  G    P YTN VYPFP  PP+ P  NPTG YRR+ T+P+ W
Sbjct:   53 NGMWKFHYADAPEHAPAGFFAANFDVAAWDEIAVPGCWQLQGYGR---PHYTNVVYPFPVDPPHVPTENPTGSYRRTFTIPASW 133          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig105029.435.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L299_9PHAE1.020e-3977.38Beta-galactosidase n=2 Tax=Ectocarpus TaxID=2879 R... [more]
A0A2R6WIM3_MARPO4.370e-2152.38Beta-galactosidase n=2 Tax=Marchantia polymorpha T... [more]
A0A1V6KG37_9DELT1.110e-2052.50Beta-galactosidase n=2 Tax=Bacteria TaxID=2 RepID=... [more]
A0A7K1Y1D7_9SPHI3.850e-2051.76Beta-galactosidase n=1 Tax=Pedobacter sp. HMF7056 ... [more]
M0LXZ5_9EURY5.250e-2051.19Beta-galactosidase n=2 Tax=Halococcus TaxID=2249 R... [more]
A0A812UZX4_SYMMI5.290e-2047.19Beta-galactosidase n=1 Tax=Symbiodinium microadria... [more]
UPI0003B56E391.820e-1948.94DUF4981 domain-containing protein n=1 Tax=Ruania a... [more]
UPI0008DA056E2.490e-1951.76DUF4981 domain-containing protein n=1 Tax=Bacteroi... [more]
A0A286EUK2_9ACTN3.390e-1951.19Beta-galactosidase n=1 Tax=Jatrophihabitans sp. GA... [more]
A0A455SCQ0_9CHLR8.650e-1948.81Beta-galactosidase n=2 Tax=Thermosporothrix TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig105029contigF-distichus_contig105029:1588..1839 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score150.2
Seed ortholog evalue4.3e-34
Seed eggNOG ortholog2880.D7FWP3
KEGG rclassRC00049,RC00452
KEGG koko:K01190
KEGG ReactionR01105,R01678,R03355,R04783,R06114
KEGG Pathwayko00052,ko00511,ko00600,ko01100,map00052,map00511,map00600,map01100
Hectar predicted targeting categoryother localisation
EggNOG free text desc.beta-glucuronidase activity
EggNOG OGsCOG3250@1,KOG2024@2759
EC3.2.1.23
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size252
Cds size252
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928970.7582412-CDS-F-distichus_contig105029:1587..18391622928970.7582412-CDS-F-distichus_contig105029:1587..1839Fucus distichus monoicousCDSF-distichus_contig105029 1588..1839 +
1690885086.588359-CDS-F-distichus_contig105029:1587..18391690885086.588359-CDS-F-distichus_contig105029:1587..1839Fucus distichus monoicousCDSF-distichus_contig105029 1588..1839 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig105029.435.1prot_F-distichus_contig105029.435.1Fucus distichus monoicouspolypeptideF-distichus_contig105029 1588..1839 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig105029.435.1

>prot_F-distichus_contig105029.435.1 ID=prot_F-distichus_contig105029.435.1|Name=mRNA_F-distichus_contig105029.435.1|organism=Fucus distichus monoicous|type=polypeptide|length=84bp
SGTWKFRLVGGVAETPAGFETPEFGDRSWEDIDVPGHWQLQDAGASDPPI
YTNTVYPFPNRPPYAPRSNPTGLYRRSLTLPSEW
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mRNA from alignment at F-distichus_contig105029:1588..1839+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig105029.435.1 ID=mRNA_F-distichus_contig105029.435.1|Name=mRNA_F-distichus_contig105029.435.1|organism=Fucus distichus monoicous|type=mRNA|length=252bp|location=Sequence derived from alignment at F-distichus_contig105029:1588..1839+ (Fucus distichus monoicous)
AGCGGTACCTGGAAGTTCCGCTTGGTGGGCGGCGTAGCTGAGACACCTGC GGGCTTCGAAACCCCGGAGTTCGGGGACAGATCCTGGGAAGACATCGACG TTCCCGGTCACTGGCAACTGCAAGATGCTGGCGCCAGCGACCCTCCGATC TATACCAACACCGTCTATCCCTTTCCAAACCGTCCCCCCTACGCGCCGAG GAGCAACCCGACCGGCCTCTATCGACGGTCGCTAACCCTCCCTTCCGAGT GG
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Coding sequence (CDS) from alignment at F-distichus_contig105029:1588..1839+

>mRNA_F-distichus_contig105029.435.1 ID=mRNA_F-distichus_contig105029.435.1|Name=mRNA_F-distichus_contig105029.435.1|organism=Fucus distichus monoicous|type=CDS|length=504bp|location=Sequence derived from alignment at F-distichus_contig105029:1588..1839+ (Fucus distichus monoicous)
AGCGGTACCTGGAAGTTCCGCTTGGTGGGCGGCGTAGCTGAGACACCTGC
GGGCTTCGAAACCCCGGAGTTCGGGGACAGATCCTGGGAAGACATCGACG
TTCCCGGTCACTGGCAACTGCAAGATGCTGGCGCCAGCGACCCTCCGATC
TATACCAACACCGTCTATCCCTTTCCAAACCGTCCCCCCTACGCGCCGAG
GAGCAACCCGACCGGCCTCTATCGACGGTCGCTAACCCTCCCTTCCGAGT
GGAGCGGTACCTGGAAGTTCCGCTTGGTGGGCGGCGTAGCTGAGACACCT
GCGGGCTTCGAAACCCCGGAGTTCGGGGACAGATCCTGGGAAGACATCGA
CGTTCCCGGTCACTGGCAACTGCAAGATGCTGGCGCCAGCGACCCTCCGA
TCTATACCAACACCGTCTATCCCTTTCCAAACCGTCCCCCCTACGCGCCG
AGGAGCAACCCGACCGGCCTCTATCGACGGTCGCTAACCCTCCCTTCCGA
GTGG
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