mRNA_F-distichus_contig10492.430.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig10492.430.1
Unique NamemRNA_F-distichus_contig10492.430.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig10492.430.1 vs. uniprot
Match: A0A6H5L4Q1_9PHAE (Cysteine-rich DPF motif domain-containing protein 1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Q1_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 3.270e-13
Identity = 34/51 (66.67%), Postives = 39/51 (76.47%), Query Frame = 3 
Query:  276 MEDVFCMMDPFSGGVQGEGGDGALQRRCLPTVLGGTCANCSRSVCARCSLF 428
            MEDV+CM DPFS G  G G  G   R+CLPTV+GGTCA CS+ VCA+CSLF
Sbjct:    1 MEDVYCMRDPFSVGGAGGGATGE-NRKCLPTVVGGTCAVCSKDVCAQCSLF 50
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BLAST of mRNA_F-distichus_contig10492.430.1 vs. uniprot
Match: A0A7S3D3U6_9EUKA (Cysteine-rich DPF motif domain-containing protein 1 n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3D3U6_9EUKA)

HSP 1 Score: 58.2 bits (139), Expect = 2.820e-8
Identity = 32/81 (39.51%), Postives = 46/81 (56.79%), Query Frame = 3 
Query:  195 FTCSLCRETFRVDYHGRKPPFCPELVFMEDVFCMMDPF-SGGVQGEGGDGALQRRCLPTVLGGTCANCSRSVCAR--CSLF 428
            FTCS+C + +  +Y G+KPPF  ++V++EDV+ + DPF S   +GE              +GG C+ C   VCA   CSLF
Sbjct:    6 FTCSICMQDYPFEYFGKKPPFQNDVVYVEDVYVLRDPFHSLHSKGE----------RVVCMGGRCSLCLSPVCASSSCSLF 76
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BLAST of mRNA_F-distichus_contig10492.430.1 vs. uniprot
Match: UPI001069289D (cysteine-rich DPF motif domain-containing protein 1-like n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI001069289D)

HSP 1 Score: 57.4 bits (137), Expect = 5.450e-8
Identity = 29/82 (35.37%), Postives = 41/82 (50.00%), Query Frame = 3 
Query:  189 MSFTCSLCRETFRVDYHGRKPPFCPELVFMEDVFCMMDPFSGGVQGEGGDGALQRRCLPTVLGGTCANCSRSVCA--RCSLF 428
            M F C  C  +   DY G++PPFC E++ +E V+ + DPF+             R     +LGG CA C   VC   +CS+F
Sbjct:    8 MVFQCKNCNFSTHYDYFGKQPPFCKEIILLESVYVIKDPFT-------------RETGIVILGGHCALCHTEVCCDQKCSVF 76
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig10492.430.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L4Q1_9PHAE3.270e-1366.67Cysteine-rich DPF motif domain-containing protein ... [more]
A0A7S3D3U6_9EUKA2.820e-839.51Cysteine-rich DPF motif domain-containing protein ... [more]
UPI001069289D5.450e-835.37cysteine-rich DPF motif domain-containing protein ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig10492contigF-distichus_contig10492:4631..8788 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.1
Seed ortholog evalue5.3e-10
Seed eggNOG ortholog192875.XP_004343823.1
Preferred nameCDPF1
KEGG koko:K22073
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Cysteine-rich domain
EggNOG OGsKOG4543@1,KOG4543@2759
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-08_006030.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03029
Exons2
Model size429
Cds size240
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig10492.430.1prot_F-distichus_contig10492.430.1Fucus distichus monoicouspolypeptideF-distichus_contig10492 4631..8600 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928970.240432-CDS-F-distichus_contig10492:4630..47111622928970.240432-CDS-F-distichus_contig10492:4630..4711Fucus distichus monoicousCDSF-distichus_contig10492 4631..4711 -
1690885086.270939-CDS-F-distichus_contig10492:4630..47111690885086.270939-CDS-F-distichus_contig10492:4630..4711Fucus distichus monoicousCDSF-distichus_contig10492 4631..4711 -
1622928970.2559-CDS-F-distichus_contig10492:8441..86001622928970.2559-CDS-F-distichus_contig10492:8441..8600Fucus distichus monoicousCDSF-distichus_contig10492 8442..8600 -
1690885086.281786-CDS-F-distichus_contig10492:8441..86001690885086.281786-CDS-F-distichus_contig10492:8441..8600Fucus distichus monoicousCDSF-distichus_contig10492 8442..8600 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928970.2688289-UTR-F-distichus_contig10492:8600..87881622928970.2688289-UTR-F-distichus_contig10492:8600..8788Fucus distichus monoicousUTRF-distichus_contig10492 8601..8788 -
1690885086.2902403-UTR-F-distichus_contig10492:8600..87881690885086.2902403-UTR-F-distichus_contig10492:8600..8788Fucus distichus monoicousUTRF-distichus_contig10492 8601..8788 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig10492.430.1

>prot_F-distichus_contig10492.430.1 ID=prot_F-distichus_contig10492.430.1|Name=mRNA_F-distichus_contig10492.430.1|organism=Fucus distichus monoicous|type=polypeptide|length=80bp
MSFTCSLCRETFRVDYHGRKPPFCPELVFMEDVFCMMDPFSGGVQGEGGD
GALQRRCLPTVLGGTCANCSRSVCARCSLF
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mRNA from alignment at F-distichus_contig10492:4631..8788-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig10492.430.1 ID=mRNA_F-distichus_contig10492.430.1|Name=mRNA_F-distichus_contig10492.430.1|organism=Fucus distichus monoicous|type=mRNA|length=4158bp|location=Sequence derived from alignment at F-distichus_contig10492:4631..8788- (Fucus distichus monoicous)
AATATAAACCGCAAACAAAAAAATGCGCCCTCGCTACTGTCTGTACTTTC
CATCTTTCAAGACCGCCTAGTCAACCCCGAAAATTTGGTGCGCTCTCCGG
GATTTTGTAACGGTAGTCACGAGCATCGATCGACTTGAGGAAGGCATCAA
AGAATCACCAGTCTCTACCGGTCAAATACAGTACTCACATGTCTTTTACG
TGCTCTCTGTGCCGGGAGACGTTCCGCGTGGATTACCACGGTAGAAAACC
ACCTTTCTGTCCTGAGCTGGTTTTCATGGAGGACGTGTTCTGCATGATGG
ACCCATTTTCGGGAGGGGTGCAAGGAGAAGGAGGCGATGGTGCACTGGTG
AGTTGACTTCGATTACATAATTGGCAATATTCCCGCCTCGGGTTGCGATC
AGTCGTTGCCGCCCGAGCATCTTGACTTCAATTGCATACCAGTACATAGC
TACGAACAACAGAGTACAAGATAGCAGTACTGTACCTACCTTTTTTCGAA
CAAGATAGTTGATGTACTGGTATGATGTATGATGTACCACTGTACCAGGT
ACAGGCTACACACCATCGCCGTGTACAGTGGATTCAGCCTGGCTGTGGAG
AATGAGCGGGCTGACGCGGGACGGGACGGCCGAACATATCTCGCGAGACC
AAATTCTAGGGCACGAACGGGCACACGGGAAAGACCACATTCCCTGTTCA
GCTGATCACGAGCAGGATTGGCAACCATACCTGTTGATGCCAAATCTATA
AAATATGTGATGGCCACACCACGAGTACTGTTGTAGTTACATACCTAGTC
TGCACGTGTGATACTGTACACCCAGTGTACCAGGTCCTACATGTGTTGAT
ACTGTACTGAAAGGACCGTACAAGTCTCATCAGCGCCACTGAAAGTTTTT
CCTCTCGTCTACCAGGTACGGCGCAGTGCCATATCACAGACGTATACAGT
ACGTGAATGTGTACTTGTGCCGTGTGTACCGTGGTTCTATTCCGACTTGT
AGCATTTTACCCGTTGTAAAACAGAAAATGTTAAAACACAACTTGAACTC
TTTCATACTATTAATAGGTCTAAATGTCCAACGGGTGGAGAACGATTAAT
TCGTTAGTACACAAAATTCGAACACGGTCGACGAGGGAAAGGAACGGCTG
AATCCTTCTCGCGATTAAAATTAAGGCACGCACCGCAGAAGGGAGGTGGA
TGAGAAATCCTGTGTGACCTTCCTCCTGTGTGACCCCGGCTGGTACGTCC
ATTGATATCCAGAATGGATGGGAAGAAAACAACAGAAAACAACAACATAC
CAGAGGCCAGGTGAATTTCTGGGAAACTTGGCTACCGTGGGCTATCATAG
TAGTATTAATACTATTAATAGTAAATAGTGAACCCCTCATTGATACCATA
GCAAAATCGGAACGCATCCCTACCTTAGATACATGGCCAGTCGGGAGAAA
TCCCGTGAGTAAGCACAAGATTCACCCTGAGAATGGAGAATGAGGAGGCT
GACACGGGACGGGACTGCCGAACCCGTCTCGAGAGACCAAATTCTCAGGC
GCGAACGCGTACAGGGGAAAAATAATTTCAGCTGACCACGAGCAGGATTG
GCAACCTTACTCGGTTAATCCATTCTCTTGCTGCTATATGTGTGACCATG
CATACTTGAGAAAAAAAAATGATCCTGTATCTGTGAGACCATACATCCAT
CATGAAATCATCTTCTATGGTCATTTTTCCCCCCTGACTGGGGGATGCTC
AGAAGGTCTAGGCACGTTCTGTTTTTTCTTCCAAAACTCTGAACGCATCT
AAACCTTCTGGGTATCCACGCCACGCCCAGGGGGAAAATTGTCAAACGAT
TTACGTGGGAACATTGGCTGTAAGGACAAAAGCGCTACCTGAAAGGGTTT
CCCAACGTACAGTGGTCACATAGGGTCAACAGTATAATATGGGGGAGAAG
CCCACAGTTATACTGTACACGTACAATAATCACCATGTATGGACACCTAA
ACAAAACCAAACATGTATGTCCAATATATTTGGACTAAGAGTCCCAGACT
ACAGTAGTAATATGGTCATGGAGAAGGATAAAGTTAAGAATTTAAATGAT
CTTATTATACTAATAATGTTCATGGTTGTTTTATTGAGCAGGGAGCCCAA
ATGTGGCTTATATTCCCGGCCGGAGTGGTATTTTTCATTTCGGTAAAGGG
AATGTACAACTCATACTGTAGATGTGAAAGGCCTCTAAGTTACAACAGGC
CCTTAAAAACTGATAAAACATCGGGTAAAAGTAGTCACATAGGGTCAAAT
GGAGACTATCGGGGGAAGCCCACCGTTATACTGTACTCAAACATTATTAA
TCGCCATGCAGAGACACCAACGCAAGAACAAGGAAATAAAAGGGTCATAT
TAACTCAAAACAAAGCCAAGGGACACTAATAATAGGAGTCTAGACTAGGT
GTACAAAATATTTGGACTCAAAGCTTCGGGCTAAAGCAATATGGCCATAG
AATGAAGTCAAGGAACTAAACTAATGTTAGTTTAGATAAGATTCATTGTT
GCTATTTCGATGAAAGGAAGAATCTAAAATTCATAGAGATATAAAAGACC
TCAAAATTACACCAGGCCCATAGAGACTTAAGTTATACCTGGTATACATT
GATGAAAACAGACTTAGGGTGTAGCGTATAGTATTCAGGAGGGCATCCAC
TTTGAGGGAAATAATCACATAGGGTCAAAGGGAAAGTATCAGGGGAAGCC
ACCCGTTATACTGTACTACTTAATCATCATGCAGGGTCATCAAAATAAGC
GGGACGGCCGAACCTGTCTTGCGAGACCAAACTCTCAGGCACGAATAAGG
ACAGGGAAAAAATATTTTTTCAGGATTTACAGACAACCTTACGTACCGGG
TTGATCCATGCGGTACTAGCCTCCGATATTTTCAACATCCCCACTTCATA
CCATTAATTGTATATAATAGTATATAATAGTATAGTAGGTGTGGGAAAAG
AGAGGCTCACATTAGTTGGTCCTTGGTGACCTGCAAGGGCATCATCTGTT
CGTTACTGGAACCACCTTGAGGATTTTTGTTAATGTCCTGTGCCGGCGTA
CTCTTGGCAGTGAACGCCATCCGTACGCAACTGCGTGACCCGATAAACAC
GGGACTGGCCCGATGACGTATGGCGGTATCAATGAATGGGCGCTGCGGCG
GAAATCTGGAGGATTCCCTTGAGTAAGCACCAGCTTCAGCCTGAGTGTGG
AGAATGAACAGGCTGGCGCAGGATGGGACGGCCGAACCCGTCTCGCGAAA
CCAAATTCTCAGGCGCGAACGGGGATAGAGAAATATTAATTTTCCCTGTT
CAGCTGACCTCGAGCAGGGATGGCAACCTTACCCGGTTGATCCCCACTCT
GCTCTATGCGATGACCATACACAGGTGATGACTGACCACGAGCAGGATTG
GCAACCTTACCCGGTTGATCCATACTCTGCTATACATACGTGATGCCTAT
ACATACAAATGGGACTCTCTTCTCTCTCTCCCAGCCTTACAAAGCGACTC
ACGGTCCACACTTGTTCGCCGTTTGGCTGGGAAAGTAACGTTATTTTACC
TACAATAGATAACGCCTCCCCGATAGATCCCCCCCCCTGCCTTTTCTTAT
CACAAACAATATATAAGCATGACTGTATCTACTGAACTGTGAAACCCATT
TCTCAAAACCGAGGGGTGAGGGAAGAAAAAGTACCTTTTTTTCCATACAC
CTTTTTTCTTGTAGAAAAGGGACGATTACAAGCGCGAGGGCGACGTTTTA
TCGGTGTTCGAAAGGAGTTGGCCGGCCGCAGCTGGTGGCAACGAACATCC
TTGAACACCGATCCTTTGGCTGTTTAATGCCCAGTTTCCTTCGGGAGTAG
TTCGAAATCTACAACTAATAGTAGTGAAGGGAAGCTATTTTAAAGTCTTC
CTCGCGAAGTCTTCGTCGCAAAGGGCCAGGCTTTTTATCCTTTGACAGCT
TCTATAATATTTACTAGAATGATATAGCCTAGACCATGCTGCCTACCCGT
CCCCCCCGAAACCACGTGCGCCCCCAGCAGAGAAGATGCCTTCCGACAGT
TCTTGGGGGGACTTGCGCCAACTGCAGCCGATCAGTCTGCGCGCGATGCA
GCCTGTTC
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Coding sequence (CDS) from alignment at F-distichus_contig10492:4631..8788-

>mRNA_F-distichus_contig10492.430.1 ID=mRNA_F-distichus_contig10492.430.1|Name=mRNA_F-distichus_contig10492.430.1|organism=Fucus distichus monoicous|type=CDS|length=480bp|location=Sequence derived from alignment at F-distichus_contig10492:4631..8788- (Fucus distichus monoicous)
ATGTCTTTTACGTGCTCTCTGTGCCGGGAGACGTTCCGCGTGGATTACCA
CGGTAGAAAACCACCTTTCTGTCCTGAGCTGGTTTTCATGGAGGACGTGT
TCTGCATGATGGACCCATTTTCGGGAGGGGTGCAAGGAGAAGGAGGCGAT
GGTGCACTGATGTCTTTTACGTGCTCTCTGTGCCGGGAGACGTTCCGCGT
GGATTACCACGGTAGAAAACCACCTTTCTGTCCTGAGCTGGTTTTCATGG
AGGACGTGTTCTGCATGATGGACCCATTTTCGGGAGGGGTGCAAGGAGAA
GGAGGCGATGGTGCACTGCAGAGAAGATGCCTTCCGACAGTTCTTGGGGG
GACTTGCGCCAACTGCAGCCGATCAGTCTGCGCGCGATGCAGCCTGTTCC
AGAGAAGATGCCTTCCGACAGTTCTTGGGGGGACTTGCGCCAACTGCAGC
CGATCAGTCTGCGCGCGATGCAGCCTGTTC
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