mRNA_F-distichus_contig104460.396.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig104460.396.1
Unique NamemRNA_F-distichus_contig104460.396.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig104460.396.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig104460contigF-distichus_contig104460:4..344 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size343
Cds size339
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928963.9533741-CDS-F-distichus_contig104460:3..3421622928963.9533741-CDS-F-distichus_contig104460:3..342Fucus distichus monoicousCDSF-distichus_contig104460 4..342 +
1690885084.2889068-CDS-F-distichus_contig104460:3..3421690885084.2889068-CDS-F-distichus_contig104460:3..342Fucus distichus monoicousCDSF-distichus_contig104460 4..342 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig104460.396.1prot_F-distichus_contig104460.396.1Fucus distichus monoicouspolypeptideF-distichus_contig104460 4..342 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig104460.396.1

>prot_F-distichus_contig104460.396.1 ID=prot_F-distichus_contig104460.396.1|Name=mRNA_F-distichus_contig104460.396.1|organism=Fucus distichus monoicous|type=polypeptide|length=113bp
LFAGRSGSGFDVGCTNYLGGTGASSTAEGGGYRGPSAPLWEGGTNPLACA
PISTAAAAHETGANAMRDGTIMPQPGLTQMASTAGLGDGDWSFLCPRLTG
MAKAPGDPGFVVP
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mRNA from alignment at F-distichus_contig104460:4..344+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig104460.396.1 ID=mRNA_F-distichus_contig104460.396.1|Name=mRNA_F-distichus_contig104460.396.1|organism=Fucus distichus monoicous|type=mRNA|length=341bp|location=Sequence derived from alignment at F-distichus_contig104460:4..344+ (Fucus distichus monoicous)
CTCTTCGCTGGAAGGTCCGGATCAGGATTTGATGTCGGATGCACGAATTA
TCTTGGCGGTACGGGTGCGAGTTCGACGGCTGAGGGGGGGGGCTACCGGG
GTCCCTCGGCACCGCTTTGGGAAGGCGGGACAAATCCACTTGCTTGTGCC
CCGATTTCAACAGCTGCAGCGGCCCATGAAACGGGTGCCAACGCCATGCG
CGATGGTACCATCATGCCGCAGCCCGGGCTGACCCAAATGGCGAGCACCG
CTGGCTTAGGGGACGGTGATTGGTCATTCCTCTGCCCAAGGCTGACTGGC
ATGGCGAAGGCTCCTGGCGATCCAGGCTTCGTCGTGCCTCC
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Coding sequence (CDS) from alignment at F-distichus_contig104460:4..344+

>mRNA_F-distichus_contig104460.396.1 ID=mRNA_F-distichus_contig104460.396.1|Name=mRNA_F-distichus_contig104460.396.1|organism=Fucus distichus monoicous|type=CDS|length=678bp|location=Sequence derived from alignment at F-distichus_contig104460:4..344+ (Fucus distichus monoicous)
CTCTTCGCTGGAAGGTCCGGATCAGGATTTGATGTCGGATGCACGAATTA
TCTTGGCGGTACGGGTGCGAGTTCGACGGCTGAGGGGGGGGGCTACCGGG
GTCCCTCGGCACCGCTTTGGGAAGGCGGGACAAATCCACTTGCTTGTGCC
CCGATTTCAACAGCTGCAGCGGCCCATGAAACGGGTGCCAACGCCATGCG
CGATGGTACCATCATGCCGCAGCCCGGGCTGACCCAAATGGCGAGCACCG
CTGGCTTAGGGGACGGTGATTGGTCATTCCTCTGCCCAAGGCTGACTGGC
ATGGCGAAGGCTCCTGGCGATCCAGGCTTCGTCGTGCCTCTCTTCGCTGG
AAGGTCCGGATCAGGATTTGATGTCGGATGCACGAATTATCTTGGCGGTA
CGGGTGCGAGTTCGACGGCTGAGGGGGGGGGCTACCGGGGTCCCTCGGCA
CCGCTTTGGGAAGGCGGGACAAATCCACTTGCTTGTGCCCCGATTTCAAC
AGCTGCAGCGGCCCATGAAACGGGTGCCAACGCCATGCGCGATGGTACCA
TCATGCCGCAGCCCGGGCTGACCCAAATGGCGAGCACCGCTGGCTTAGGG
GACGGTGATTGGTCATTCCTCTGCCCAAGGCTGACTGGCATGGCGAAGGC
TCCTGGCGATCCAGGCTTCGTCGTGCCT
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