mRNA_F-distichus_contig10432.389.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig10432.389.1
Unique NamemRNA_F-distichus_contig10432.389.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
[Close]
BLAST of mRNA_F-distichus_contig10432.389.1 vs. uniprot
Match: D7G0H5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0H5_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 1.160e-11
Identity = 48/120 (40.00%), Postives = 61/120 (50.83%), Query Frame = 1 
Query:  103 EHAAGIQQQSK-------------RLVSDRFVCEFRADFKGLGMSLDVDDEGRLVVLEVGE-------------------DGEAAAFADLQRGNLYIVTVGVDQKHPKQPADELLRRLMT 366
            +HAA IQQ  K             +  S+RF CEF  DF+G+GM LDVD+ GRLVV EV                      GEA  +  L + NL+IV VG+  +  +  ADELLR+LMT
Sbjct:   10 KHAAEIQQDKKDKXXXXXQGPEAQQESSERFTCEFHDDFQGIGMLLDVDECGRLVVQEVSIGYKEQTRRRTYLHVDKVNLQGEAGKYPTLCQQNLHIVAVGIAGEREESAADELLRQLMT 129
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig10432.389.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G0H5_ECTSI1.160e-1140.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig10432contigF-distichus_contig10432:6774..8002 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size367
Cds size366
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig10432.389.1prot_F-distichus_contig10432.389.1Fucus distichus monoicouspolypeptideF-distichus_contig10432 6774..8002 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928963.077427-CDS-F-distichus_contig10432:6773..69021622928963.077427-CDS-F-distichus_contig10432:6773..6902Fucus distichus monoicousCDSF-distichus_contig10432 6774..6902 -
1690885084.0489662-CDS-F-distichus_contig10432:6773..69021690885084.0489662-CDS-F-distichus_contig10432:6773..6902Fucus distichus monoicousCDSF-distichus_contig10432 6774..6902 -
1622928963.0927606-CDS-F-distichus_contig10432:7470..76021622928963.0927606-CDS-F-distichus_contig10432:7470..7602Fucus distichus monoicousCDSF-distichus_contig10432 7471..7602 -
1690885084.064449-CDS-F-distichus_contig10432:7470..76021690885084.064449-CDS-F-distichus_contig10432:7470..7602Fucus distichus monoicousCDSF-distichus_contig10432 7471..7602 -
1622928963.2496827-CDS-F-distichus_contig10432:7897..80021622928963.2496827-CDS-F-distichus_contig10432:7897..8002Fucus distichus monoicousCDSF-distichus_contig10432 7898..8002 -
1690885084.0768325-CDS-F-distichus_contig10432:7897..80021690885084.0768325-CDS-F-distichus_contig10432:7897..8002Fucus distichus monoicousCDSF-distichus_contig10432 7898..8002 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig10432.389.1

>prot_F-distichus_contig10432.389.1 ID=prot_F-distichus_contig10432.389.1|Name=mRNA_F-distichus_contig10432.389.1|organism=Fucus distichus monoicous|type=polypeptide|length=122bp
KILKITVENKRRAALGGLGTRRPYQRERTRMARLEHAAGIQQQSKRLVSD
RFVCEFRADFKGLGMSLDVDDEGRLVVLEVGEDGEAAAFADLQRGNLYIV
TVGVDQKHPKQPADELLRRLMT
back to top

mRNA from alignment at F-distichus_contig10432:6774..8002-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig10432.389.1 ID=mRNA_F-distichus_contig10432.389.1|Name=mRNA_F-distichus_contig10432.389.1|organism=Fucus distichus monoicous|type=mRNA|length=1229bp|location=Sequence derived from alignment at F-distichus_contig10432:6774..8002- (Fucus distichus monoicous)
AAAATCTTGAAGATAACCGTGGAAAACAAGCGCCGGGCGGCGCTCGGAGG
CCTTGGCACTCGGAGACCTTATCAGAGAGAGAGAACCAGAATGGCCAGAC
TAGAAGTAAGCAGTTGTTGCTTGTGTATTGAGGATGCCAGGATATAGTGC
ACCTGCGTTTCATCCGCGTGCTGTTGTGCGTAATTCAAGAACGTACCAGT
ACCCTTAGGTGCCTAAGCTTTTTTGAAGTAATCGTCGTATTTGCGTCGAA
AATCACGAAGTACTAAGCTGTCGGGGAAGATACGCAAACGCCAGCAAAAT
GAGGTTCTCACGTCGCACATGCCGTCGGCGAGCAAGGGTGATATTTCTCG
ATGCTCAATTTCGTTTTAAATTTTGCTCTACTCGCTCTGTATCCTTTCAG
CATGCCGCAGGGATCCAGCAGCAGTCGAAACGATTAGTATCCGACCGGTT
CGTTTGTGAGTTCCGGGCCGATTTCAAAGGATTAGGGATGTCCTTGGACG
TGGACGACGAAGGGCGACTTGTGGTACTAGAGGTGAGCTGATGGACTCAG
GAGCTTAGACGAAGGCCGTAAACTCTTGGAAGTACCTTAAACTCTTCAAG
TCCCTGATTTTTTACTCAATACGTTCAGCGTCTGCGAGCTTTGGGAGGCA
TGTGTTTGCGAGGAGGATCGTAAAGGTCATCCAAGCAAATACAGTCCGTA
TAAAACATTGGAGAATCCTTGTAATACCATGTAGAGTTTTTGTCCTTACA
CCCAATGTTCCCACCTAAACCTTTTGATTGCTCATGAGGTTTAGCCGCGT
TCATTTTTTTTCTTAAAACTGTGTTTGCTGTTTGGCGTTTAGATCCAGCT
TAGCAGTAAAGCCGGGGACACGTCTCTGTAACCAGTAATGGCCCTGCGTT
TAACTAGCGCTTTAGCGGCAAACCACTGGCAACACGCCGCTGCCGGGACT
CATTTCCGTGCGACCTTCCAGCCCAGGTCAGGTAAAACGGCGAAGTCGCG
ATATTCACTACAATGCGTTAGCGTAAATATTTCAGCGGTGATAAGCCACC
GGCAACGCACCGATGTCAACCCGCATTTTCCGTTCAATCTTTCCGTGCAG
GTCGGGGAAGACGGCGAAGCCGCCGCGTTCGCTGACCTCCAGCGAGGTAA
CCTCTACATTGTCACCGTAGGAGTGGACCAGAAGCACCCAAAACAACCTG
CAGATGAACTCCTGCGGCGGTTGATGACG
back to top

Coding sequence (CDS) from alignment at F-distichus_contig10432:6774..8002-

>mRNA_F-distichus_contig10432.389.1 ID=mRNA_F-distichus_contig10432.389.1|Name=mRNA_F-distichus_contig10432.389.1|organism=Fucus distichus monoicous|type=CDS|length=732bp|location=Sequence derived from alignment at F-distichus_contig10432:6774..8002- (Fucus distichus monoicous)
AAAATCTTGAAGATAACCGTGGAAAACAAGCGCCGGGCGGCGCTCGGAGG
CCTTGGCACTCGGAGACCTTATCAGAGAGAGAGAACCAGAATGGCCAGAC
TAGAAAAAATCTTGAAGATAACCGTGGAAAACAAGCGCCGGGCGGCGCTC
GGAGGCCTTGGCACTCGGAGACCTTATCAGAGAGAGAGAACCAGAATGGC
CAGACTAGAACATGCCGCAGGGATCCAGCAGCAGTCGAAACGATTAGTAT
CCGACCGGTTCGTTTGTGAGTTCCGGGCCGATTTCAAAGGATTAGGGATG
TCCTTGGACGTGGACGACGAAGGGCGACTTGTGGTACTAGAGCATGCCGC
AGGGATCCAGCAGCAGTCGAAACGATTAGTATCCGACCGGTTCGTTTGTG
AGTTCCGGGCCGATTTCAAAGGATTAGGGATGTCCTTGGACGTGGACGAC
GAAGGGCGACTTGTGGTACTAGAGGTCGGGGAAGACGGCGAAGCCGCCGC
GTTCGCTGACCTCCAGCGAGGTAACCTCTACATTGTCACCGTAGGAGTGG
ACCAGAAGCACCCAAAACAACCTGCAGATGAACTCCTGCGGCGGTTGATG
ACGGTCGGGGAAGACGGCGAAGCCGCCGCGTTCGCTGACCTCCAGCGAGG
TAACCTCTACATTGTCACCGTAGGAGTGGACCAGAAGCACCCAAAACAAC
CTGCAGATGAACTCCTGCGGCGGTTGATGACG
back to top