mRNA_F-distichus_contig103907.347.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig103907.347.1
Unique NamemRNA_F-distichus_contig103907.347.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig103907.347.1 vs. uniprot
Match: D8LP03_ECTSI (LETM1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP03_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 1.480e-16
Identity = 38/42 (90.48%), Postives = 40/42 (95.24%), Query Frame = 1 
Query:    1 SAVGHVLVFSFIQRFFPDFFPSTYTDRRQNLLKMYTEVDKKA 126
            S VGHVLVFSFIQRFFP+FFPSTYTDRRQNLLKMYTEV+KK 
Sbjct:  538 SPVGHVLVFSFIQRFFPNFFPSTYTDRRQNLLKMYTEVEKKV 579
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BLAST of mRNA_F-distichus_contig103907.347.1 vs. uniprot
Match: A0A6H5LQ87_9PHAE (LETM1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LQ87_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 3.780e-16
Identity = 37/42 (88.10%), Postives = 40/42 (95.24%), Query Frame = 1 
Query:    1 SAVGHVLVFSFIQRFFPDFFPSTYTDRRQNLLKMYTEVDKKA 126
            + VGHVLVFSFIQRFFP+FFPSTYTDRRQNLLKMYTEV+KK 
Sbjct:  721 TPVGHVLVFSFIQRFFPNFFPSTYTDRRQNLLKMYTEVEKKV 762
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BLAST of mRNA_F-distichus_contig103907.347.1 vs. uniprot
Match: A0A836CA55_9STRA (LETM1 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA55_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 1.580e-14
Identity = 34/40 (85.00%), Postives = 38/40 (95.00%), Query Frame = 1 
Query:    1 SAVGHVLVFSFIQRFFPDFFPSTYTDRRQNLLKMYTEVDK 120
            S VGHVLVFSFIQR+FPDFFPST+T+RRQNLLKMY EV+K
Sbjct:  230 SPVGHVLVFSFIQRYFPDFFPSTFTERRQNLLKMYEEVEK 269
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BLAST of mRNA_F-distichus_contig103907.347.1 vs. uniprot
Match: A0A7S1NU99_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1NU99_9EUGL)

HSP 1 Score: 72.8 bits (177), Expect = 7.590e-14
Identity = 32/41 (78.05%), Postives = 39/41 (95.12%), Query Frame = 1 
Query:    1 SAVGHVLVFSFIQRFFPDFFPSTYTDRRQNLLKMYTEVDKK 123
            S +GHVLVFSFIQRFFP+FFPS+++DRRQNLLKMY E++KK
Sbjct:  691 SPIGHVLVFSFIQRFFPEFFPSSFSDRRQNLLKMYEEIEKK 731
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BLAST of mRNA_F-distichus_contig103907.347.1 vs. uniprot
Match: A0A4D9D1V1_9STRA (LETM1 domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D1V1_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 1.260e-12
Identity = 31/41 (75.61%), Postives = 36/41 (87.80%), Query Frame = 1 
Query:    1 SAVGHVLVFSFIQRFFPDFFPSTYTDRRQNLLKMYTEVDKK 123
            + +GHVLVFS IQR FPDFFPST+T+RRQNL KMY E+DKK
Sbjct:  674 TPIGHVLVFSLIQRIFPDFFPSTFTERRQNLSKMYDEIDKK 714
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BLAST of mRNA_F-distichus_contig103907.347.1 vs. uniprot
Match: A0A7S0U8H3_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0U8H3_HEMAN)

HSP 1 Score: 68.6 bits (166), Expect = 2.360e-12
Identity = 32/39 (82.05%), Postives = 34/39 (87.18%), Query Frame = 1 
Query:    1 SAVGHVLVFSFIQRFFPDFFPSTYTDRRQNLLKMYTEVD 117
            S VGHVLVFSFIQRFFPDFFPS YTDRRQ LL+MY  V+
Sbjct:  466 SPVGHVLVFSFIQRFFPDFFPSPYTDRRQKLLRMYQAVE 504
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BLAST of mRNA_F-distichus_contig103907.347.1 vs. uniprot
Match: A0A7S2XTH3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XTH3_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 2.730e-12
Identity = 30/39 (76.92%), Postives = 35/39 (89.74%), Query Frame = 1 
Query:    1 SAVGHVLVFSFIQRFFPDFFPSTYTDRRQNLLKMYTEVD 117
            S VGHVLVFSFIQRFFPDFFPS++TDRRQNL +MY  ++
Sbjct:  267 SPVGHVLVFSFIQRFFPDFFPSSFTDRRQNLARMYESIE 305
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BLAST of mRNA_F-distichus_contig103907.347.1 vs. uniprot
Match: A0A7S1R4U4_ALECA (Hypothetical protein n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1R4U4_ALECA)

HSP 1 Score: 64.7 bits (156), Expect = 2.930e-12
Identity = 26/38 (68.42%), Postives = 36/38 (94.74%), Query Frame = 1 
Query:    1 SAVGHVLVFSFIQRFFPDFFPSTYTDRRQNLLKMYTEV 114
            + +GHVLVFSFIQ+FFPDFFPST+T+RRQN++K+Y ++
Sbjct:   69 TPIGHVLVFSFIQKFFPDFFPSTFTERRQNVVKIYQDI 106
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BLAST of mRNA_F-distichus_contig103907.347.1 vs. uniprot
Match: A0A7S3UWA8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UWA8_HETAK)

HSP 1 Score: 67.8 bits (164), Expect = 4.160e-12
Identity = 29/41 (70.73%), Postives = 37/41 (90.24%), Query Frame = 1 
Query:    1 SAVGHVLVFSFIQRFFPDFFPSTYTDRRQNLLKMYTEVDKK 123
            + VGHVL+FSFIQRFFPDFFP+ YTD+RQNLLK+Y  +++K
Sbjct:  315 TPVGHVLIFSFIQRFFPDFFPTPYTDQRQNLLKLYETIEEK 355
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BLAST of mRNA_F-distichus_contig103907.347.1 vs. uniprot
Match: L1IDU4_GUITC (LETM1 domain-containing protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1IDU4_GUITC)

HSP 1 Score: 67.8 bits (164), Expect = 4.400e-12
Identity = 30/39 (76.92%), Postives = 35/39 (89.74%), Query Frame = 1 
Query:    1 SAVGHVLVFSFIQRFFPDFFPSTYTDRRQNLLKMYTEVD 117
            S VGHVLVFSFIQRFFPDFFP+ YTDRRQNL+++Y  V+
Sbjct:  655 SPVGHVLVFSFIQRFFPDFFPTPYTDRRQNLMRIYQSVE 693
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig103907.347.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LP03_ECTSI1.480e-1690.48LETM1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5LQ87_9PHAE3.780e-1688.10LETM1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A836CA55_9STRA1.580e-1485.00LETM1 domain-containing protein n=1 Tax=Tribonema ... [more]
A0A7S1NU99_9EUGL7.590e-1478.05Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A4D9D1V1_9STRA1.260e-1275.61LETM1 domain-containing protein n=1 Tax=Nannochlor... [more]
A0A7S0U8H3_HEMAN2.360e-1282.05Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A7S2XTH3_9STRA2.730e-1276.92Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S1R4U4_ALECA2.930e-1268.42Hypothetical protein n=1 Tax=Alexandrium catenella... [more]
A0A7S3UWA8_HETAK4.160e-1270.73Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
L1IDU4_GUITC4.400e-1276.92LETM1 domain-containing protein n=2 Tax=Guillardia... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig103907contigF-distichus_contig103907:1427..1558 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score81.3
Seed ortholog evalue1.3e-13
Seed eggNOG ortholog2880.D8LP03
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.calcium export from the mitochondrion
EggNOG OGsKOG1043@1,KOG1043@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size132
Cds size132
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928958.584925-CDS-F-distichus_contig103907:1426..15581622928958.584925-CDS-F-distichus_contig103907:1426..1558Fucus distichus monoicousCDSF-distichus_contig103907 1427..1558 +
1690885082.1726813-CDS-F-distichus_contig103907:1426..15581690885082.1726813-CDS-F-distichus_contig103907:1426..1558Fucus distichus monoicousCDSF-distichus_contig103907 1427..1558 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig103907.347.1prot_F-distichus_contig103907.347.1Fucus distichus monoicouspolypeptideF-distichus_contig103907 1427..1558 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig103907.347.1

>prot_F-distichus_contig103907.347.1 ID=prot_F-distichus_contig103907.347.1|Name=mRNA_F-distichus_contig103907.347.1|organism=Fucus distichus monoicous|type=polypeptide|length=44bp
SAVGHVLVFSFIQRFFPDFFPSTYTDRRQNLLKMYTEVDKKAR*
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mRNA from alignment at F-distichus_contig103907:1427..1558+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig103907.347.1 ID=mRNA_F-distichus_contig103907.347.1|Name=mRNA_F-distichus_contig103907.347.1|organism=Fucus distichus monoicous|type=mRNA|length=132bp|location=Sequence derived from alignment at F-distichus_contig103907:1427..1558+ (Fucus distichus monoicous)
TCTGCAGTGGGTCACGTGCTGGTGTTCTCCTTCATCCAGAGATTCTTCCC
GGACTTCTTTCCTTCGACCTACACCGACCGCCGCCAAAACCTCCTCAAGA
TGTACACCGAAGTCGACAAGAAGGCGAGATAA
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Coding sequence (CDS) from alignment at F-distichus_contig103907:1427..1558+

>mRNA_F-distichus_contig103907.347.1 ID=mRNA_F-distichus_contig103907.347.1|Name=mRNA_F-distichus_contig103907.347.1|organism=Fucus distichus monoicous|type=CDS|length=264bp|location=Sequence derived from alignment at F-distichus_contig103907:1427..1558+ (Fucus distichus monoicous)
TCTGCAGTGGGTCACGTGCTGGTGTTCTCCTTCATCCAGAGATTCTTCCC
GGACTTCTTTCCTTCGACCTACACCGACCGCCGCCAAAACCTCCTCAAGA
TGTACACCGAAGTCGACAAGAAGGCGAGATAATCTGCAGTGGGTCACGTG
CTGGTGTTCTCCTTCATCCAGAGATTCTTCCCGGACTTCTTTCCTTCGAC
CTACACCGACCGCCGCCAAAACCTCCTCAAGATGTACACCGAAGTCGACA
AGAAGGCGAGATAA
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