mRNA_F-distichus_contig10310.277.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig10310.277.1
Unique NamemRNA_F-distichus_contig10310.277.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig10310.277.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig10310contigF-distichus_contig10310:1917..3194 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size691
Cds size537
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig10310.277.1prot_F-distichus_contig10310.277.1Fucus distichus monoicouspolypeptideF-distichus_contig10310 2589..3125 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928949.1293883-UTR-F-distichus_contig10310:1916..19971622928949.1293883-UTR-F-distichus_contig10310:1916..1997Fucus distichus monoicousUTRF-distichus_contig10310 1917..1997 -
1690885078.781243-UTR-F-distichus_contig10310:1916..19971690885078.781243-UTR-F-distichus_contig10310:1916..1997Fucus distichus monoicousUTRF-distichus_contig10310 1917..1997 -
1622928949.146943-UTR-F-distichus_contig10310:2584..25881622928949.146943-UTR-F-distichus_contig10310:2584..2588Fucus distichus monoicousUTRF-distichus_contig10310 2585..2588 -
1690885078.7935202-UTR-F-distichus_contig10310:2584..25881690885078.7935202-UTR-F-distichus_contig10310:2584..2588Fucus distichus monoicousUTRF-distichus_contig10310 2585..2588 -
1622928949.1998088-UTR-F-distichus_contig10310:3125..31941622928949.1998088-UTR-F-distichus_contig10310:3125..3194Fucus distichus monoicousUTRF-distichus_contig10310 3126..3194 -
1690885078.818219-UTR-F-distichus_contig10310:3125..31941690885078.818219-UTR-F-distichus_contig10310:3125..3194Fucus distichus monoicousUTRF-distichus_contig10310 3126..3194 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928949.1634333-CDS-F-distichus_contig10310:2588..31251622928949.1634333-CDS-F-distichus_contig10310:2588..3125Fucus distichus monoicousCDSF-distichus_contig10310 2589..3125 -
1690885078.8094456-CDS-F-distichus_contig10310:2588..31251690885078.8094456-CDS-F-distichus_contig10310:2588..3125Fucus distichus monoicousCDSF-distichus_contig10310 2589..3125 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig10310.277.1

>prot_F-distichus_contig10310.277.1 ID=prot_F-distichus_contig10310.277.1|Name=mRNA_F-distichus_contig10310.277.1|organism=Fucus distichus monoicous|type=polypeptide|length=179bp
MVDVFNIKCRTEGCGKWPSYGVRGSKTAEYCAQHAPDAMVNVKSSKCKTG
GCGKYGGVANKRTAEYYRTQHARLKCGVEGYREGEVDPHYSGTETIGNVL
PNGTKLQAVHPPATTSPLSAGGQASRKRVRHPEFKSTASMRPISRESAVR
VGIMQDSDGQTSPVKRDYSVKAEVQLFL*
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mRNA from alignment at F-distichus_contig10310:1917..3194-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig10310.277.1 ID=mRNA_F-distichus_contig10310.277.1|Name=mRNA_F-distichus_contig10310.277.1|organism=Fucus distichus monoicous|type=mRNA|length=1278bp|location=Sequence derived from alignment at F-distichus_contig10310:1917..3194- (Fucus distichus monoicous)
AAGCAGCCGTTGTACGGAGTGGCAGGTACAAAAACTCCGGAGTACTTTGC
ACAACACGCACTGGATGGGATGGTCGACGTCTTCAACATAAAGTGCAGAA
CCGAAGGCTGTGGAAAGTGGCCATCGTATGGAGTGAGAGGTTCGAAAACT
GCAGAGTACTGTGCTCAGCACGCACCGGACGCGATGGTCAACGTCAAGAG
CAGTAAGTGCAAAACTGGAGGCTGCGGCAAGTACGGCGGAGTGGCCAACA
AAAGAACGGCGGAGTACTACCGTACACAGCACGCCAGACTAAAGTGCGGT
GTCGAAGGATACAGGGAGGGAGAGGTTGACCCACATTATTCCGGGACGGA
AACCATTGGAAACGTACTTCCGAACGGTACTAAACTTCAAGCTGTTCATC
CTCCTGCCACCACAAGCCCTCTGTCGGCAGGTGGCCAGGCATCTCGTAAG
CGAGTACGTCACCCGGAATTTAAGTCTACGGCCTCGATGCGACCTATCTC
ACGAGAGTCGGCTGTAAGAGTGGGGATTATGCAGGATAGTGACGGGCAAA
CGTCTCCCGTCAAACGGGATTATTCTGTGAAAGCAGAGGTGCAGCTCTTC
TTGTAGCCAGGTACGCTATACGTGACCCCATGCTCTATCTTCTAAATGTC
ATTTTTTGTGTCCTTGCTCTTACAGGACTGACGAGGTTATTTTTCTTGCC
CAAAGCGTATCATGAGGTTGTCTTTTGTTTGTTTCTTTTATTTTGTGTCT
CTTCTGTAACCCTCCCTAGCGATGATGTCCTTTGCCGACAAATTTCCTGT
CCGTTTCCTTCTGTCTGCCTTCCCTGAGTTTTTTTTTCTCAATGTGTTCC
CGGTTTGATTTGGATAATTTCCGTCTATCTTGTGGCCACGGCTGGATTCT
AAGCGGATCAGACAATGTGAGATAAACAACAACAACAACAATGCCAACTG
TAGTACTACGATTCTGGCGACCGTAGCTCAATCGTTGGATTTTCCTTTGA
TCAGGTAGAATGCGTACCCCGTCTCATTCATGAATTCCACGCTGGCTTTG
ATCGCAAGGCTGTGAGTTCAGCTCAAGGGCGCCTATTCCTCTTAGACTCT
CAAGACCTTGCAGCTGCACCAATTACCCTCACGAAATACATCACTAGTGC
TCATCCCCATGGCCTTGTTCTCCCGTACCCCCGTCTTTCGAACTCAGGTG
ATGTGGTCAAGAGGATGGTCATGATATTTTTTCTGTAGCCGCGGAGATGC
TGATGAGTTCGGTGAGGTTTCTACCGTG
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Coding sequence (CDS) from alignment at F-distichus_contig10310:1917..3194-

>mRNA_F-distichus_contig10310.277.1 ID=mRNA_F-distichus_contig10310.277.1|Name=mRNA_F-distichus_contig10310.277.1|organism=Fucus distichus monoicous|type=CDS|length=1074bp|location=Sequence derived from alignment at F-distichus_contig10310:1917..3194- (Fucus distichus monoicous)
ATGGTCGACGTCTTCAACATAAAGTGCAGAACCGAAGGCTGTGGAAAGTG
GCCATCGTATGGAGTGAGAGGTTCGAAAACTGCAGAGTACTGTGCTCAGC
ACGCACCGGACGCGATGGTCAACGTCAAGAGCAGTAAGTGCAAAACTGGA
GGCTGCGGCAAGTACGGCGGAGTGGCCAACAAAAGAACGGCGGAGTACTA
CCGTACACAGCACGCCAGACTAAAGTGCGGTGTCGAAGGATACAGGGAGG
GAGAGGTTGACCCACATTATTCCGGGACGGAAACCATTGGAAACGTACTT
CCGAACGGTACTAAACTTCAAGCTGTTCATCCTCCTGCCACCACAAGCCC
TCTGTCGGCAGGTGGCCAGGCATCTCGTAAGCGAGTACGTCACCCGGAAT
TTAAGTCTACGGCCTCGATGCGACCTATCTCACGAGAGTCGGCTGTAAGA
GTGGGGATTATGCAGGATAGTGACGGGCAAACGTCTCCCGTCAAACGGGA
TTATTCTGTGAAAGCAGAGGTGCAGCTCTTCTTGTAGATGGTCGACGTCT
TCAACATAAAGTGCAGAACCGAAGGCTGTGGAAAGTGGCCATCGTATGGA
GTGAGAGGTTCGAAAACTGCAGAGTACTGTGCTCAGCACGCACCGGACGC
GATGGTCAACGTCAAGAGCAGTAAGTGCAAAACTGGAGGCTGCGGCAAGT
ACGGCGGAGTGGCCAACAAAAGAACGGCGGAGTACTACCGTACACAGCAC
GCCAGACTAAAGTGCGGTGTCGAAGGATACAGGGAGGGAGAGGTTGACCC
ACATTATTCCGGGACGGAAACCATTGGAAACGTACTTCCGAACGGTACTA
AACTTCAAGCTGTTCATCCTCCTGCCACCACAAGCCCTCTGTCGGCAGGT
GGCCAGGCATCTCGTAAGCGAGTACGTCACCCGGAATTTAAGTCTACGGC
CTCGATGCGACCTATCTCACGAGAGTCGGCTGTAAGAGTGGGGATTATGC
AGGATAGTGACGGGCAAACGTCTCCCGTCAAACGGGATTATTCTGTGAAA
GCAGAGGTGCAGCTCTTCTTGTAG
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