mRNA_F-distichus_contig1031.275.1 (mRNA) Fucus distichus monoicous
|
Overview
Homology
BLAST of mRNA_F-distichus_contig1031.275.1 vs. uniprot
Match: D7FYL7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYL7_ECTSI) HSP 1 Score: 221 bits (562), Expect = 3.640e-64 Identity = 121/226 (53.54%), Postives = 167/226 (73.89%), Query Frame = 3
Query: 66 ENAILKKRIKDLTKAAAAKDENLHAIMSQLKALQLEFERVKKRAEFDLVARGGQTQKLAFLEHTVSTLRRDLQTNLERRQNLEGKLSILKRSWQNERSLRLQDLHRQDVVSSQKKNAKEAAECTERKWLEAEQQVEILKNKLESRVCELDVQRQINVTQGNEVRAQAAEIELHRADVLRLKRMLYCRQGEISSEKNTSANLRRELLRVRREFISNTSNRSEQQSAF 743
+N L+ +++ +A K+E L I +L A + E ER KK A+FDLVA G+T+KL LEHTV+TLR DL TN+ERRQ +E K++ L+RSWQNERSLRLQDLHR D +SS K+A++ AE E +WLE+E++ ++L+ K+E ++ EL+ Q ++N Q E+ AQAAEIELHR ++ LK++L R+GEIS+ +T+ +LRREL RVRREFI +TSNRSEQQSA
Sbjct: 31 QNEALEDQVQAFQEALEVKEERLRTIAGELTAARRELERAKKSAKFDLVAAEGRTKKLGILEHTVATLRHDLHTNVERRQKVEEKVATLERSWQNERSLRLQDLHRHDAMSSDTKHAEKVAEDVEGRWLESEKRAQVLEVKVEQKIHELESQSRVNAAQAGEIEAQAAEIELHRKEIFDLKQVLLAREGEISTGCSTATDLRRELSRVRREFIMSTSNRSEQQSAL 256
BLAST of mRNA_F-distichus_contig1031.275.1 vs. uniprot
Match: A0A6H5JZF3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZF3_9PHAE) HSP 1 Score: 145 bits (367), Expect = 6.120e-36 Identity = 96/243 (39.51%), Postives = 135/243 (55.56%), Query Frame = 3
Query: 24 TGGLKEGGLEEALE---ENAILKKRIKDLTKAAAAKDENLHAIMSQLKALQLEFERVKKRAEFDLVARGGQTQKLAFLEHTVSTLRRDLQTNLERRQNLEGKLSILKRSWQNERSLRLQDLHRQDVVSSQKKNAKEAAECTERKWLEAEQQVEILKNKLESRVCELDVQRQINVTQGNEVRAQAAEIELHRADVLRLKRMLYCRQGEISSEKNTSANLRRELLRVRREFISNTSNRSEQQSAF 743
T G ++GG+ L +N L+ +++ +A K+E L I L A + E ER KK A+FDLVA G+T+KL LEHTV+TL DLQTN+ERR WLE+E++ ++L+ K+E ++ EL+ Q ++N Q E+ AQAAEIE HR ++L LK+ +GEIS+ ++T+ +LRREL RVRREFI +TSNRSEQQSA
Sbjct: 14 TPGNEDGGVATDLHVALQNEALENQVQAFQEALEVKEERLRTITGMLTATRKELERAKKSAKFDLVAAEGRTKKLGILEHTVATLHHDLQTNVERR------------------------------------------------WLESEKRAQVLEEKVEQKIHELESQSRVNAAQAGEIEAQAAEIEFHRKEILDLKQ-----EGEISTGRSTATDLRRELSRVRREFIMSTSNRSEQQSAL 203 The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig1031.275.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-distichus_contig1031.275.1 >prot_F-distichus_contig1031.275.1 ID=prot_F-distichus_contig1031.275.1|Name=mRNA_F-distichus_contig1031.275.1|organism=Fucus distichus monoicous|type=polypeptide|length=328bp MDAMDLTGGLKEGGLEEALEENAILKKRIKDLTKAAAAKDENLHAIMSQLback to top mRNA from alignment at F-distichus_contig1031:15612..19788+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-distichus_contig1031.275.1 ID=mRNA_F-distichus_contig1031.275.1|Name=mRNA_F-distichus_contig1031.275.1|organism=Fucus distichus monoicous|type=mRNA|length=4177bp|location=Sequence derived from alignment at F-distichus_contig1031:15612..19788+ (Fucus distichus monoicous)back to top Coding sequence (CDS) from alignment at F-distichus_contig1031:15612..19788+ >mRNA_F-distichus_contig1031.275.1 ID=mRNA_F-distichus_contig1031.275.1|Name=mRNA_F-distichus_contig1031.275.1|organism=Fucus distichus monoicous|type=CDS|length=1968bp|location=Sequence derived from alignment at F-distichus_contig1031:15612..19788+ (Fucus distichus monoicous)back to top |