mRNA_F-distichus_contig10276.243.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig10276.243.1
Unique NamemRNA_F-distichus_contig10276.243.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig10276.243.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig10276contigF-distichus_contig10276:9846..11048 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size377
Cds size267
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig10276.243.1prot_F-distichus_contig10276.243.1Fucus distichus monoicouspolypeptideF-distichus_contig10276 9913..11005 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928944.8812022-UTR-F-distichus_contig10276:9845..99121622928944.8812022-UTR-F-distichus_contig10276:9845..9912Fucus distichus monoicousUTRF-distichus_contig10276 9846..9912 -
1690885076.7803335-UTR-F-distichus_contig10276:9845..99121690885076.7803335-UTR-F-distichus_contig10276:9845..9912Fucus distichus monoicousUTRF-distichus_contig10276 9846..9912 -
1622928944.9320717-UTR-F-distichus_contig10276:11005..110481622928944.9320717-UTR-F-distichus_contig10276:11005..11048Fucus distichus monoicousUTRF-distichus_contig10276 11006..11048 -
1690885076.8157291-UTR-F-distichus_contig10276:11005..110481690885076.8157291-UTR-F-distichus_contig10276:11005..11048Fucus distichus monoicousUTRF-distichus_contig10276 11006..11048 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928944.9039357-CDS-F-distichus_contig10276:9912..99221622928944.9039357-CDS-F-distichus_contig10276:9912..9922Fucus distichus monoicousCDSF-distichus_contig10276 9913..9922 -
1690885076.789487-CDS-F-distichus_contig10276:9912..99221690885076.789487-CDS-F-distichus_contig10276:9912..9922Fucus distichus monoicousCDSF-distichus_contig10276 9913..9922 -
1622928944.920619-CDS-F-distichus_contig10276:10748..110051622928944.920619-CDS-F-distichus_contig10276:10748..11005Fucus distichus monoicousCDSF-distichus_contig10276 10749..11005 -
1690885076.8045468-CDS-F-distichus_contig10276:10748..110051690885076.8045468-CDS-F-distichus_contig10276:10748..11005Fucus distichus monoicousCDSF-distichus_contig10276 10749..11005 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig10276.243.1

>prot_F-distichus_contig10276.243.1 ID=prot_F-distichus_contig10276.243.1|Name=mRNA_F-distichus_contig10276.243.1|organism=Fucus distichus monoicous|type=polypeptide|length=89bp
MYCAGYSPTWFSEAIGKTRDSRNRNRRVRIDSSASDRYVEPRRPRYREDS
ASGRGKAKRVMAALTTDSDTESDSPAASERDKRTHRKG*
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mRNA from alignment at F-distichus_contig10276:9846..11048-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig10276.243.1 ID=mRNA_F-distichus_contig10276.243.1|Name=mRNA_F-distichus_contig10276.243.1|organism=Fucus distichus monoicous|type=mRNA|length=1203bp|location=Sequence derived from alignment at F-distichus_contig10276:9846..11048- (Fucus distichus monoicous)
GGGGCAGCAGGAAATCATCGACCTGTGCGGGTTCGTCCGGAAAATGTACT
GCGCTGGGTATTCCCCCACATGGTTCTCGGAGGCTATCGGTAAGACTCGA
GACAGCCGCAACAGGAACCGCCGCGTACGGATCGACTCCTCCGCCAGCGA
CCGTTACGTTGAACCGCGCCGACCACGTTACCGCGAAGACTCCGCCAGCG
GCCGCGGAAAAGCAAAACGGGTAATGGCGGCACTTACCACGGATAGCGAT
ACTGAATCGGACTCTCCTGCTGCTTCTGAACGCGATAAACGGACCCACAG
GCAAGCACTCCCACGCATCTTTCACGCGCCCGAACCCCCAGGTATCGCGC
CGCCATTCCCCCCCCGGATCGCTCGGCCCCGAGGAGTGCGGCGAAATACC
CCGCCATGCCCCTCCCCCGATTTACGAGCGCCCCGCGAGGCGACCATATC
TCCGGGAAACCAATCCCCGGACAGGTCCCTGCACCCTTTACTTACACCAC
AGCCCCTCGGGATCATCACCACTGCCACTATAGCTACTCTCAATCAGCAT
TTGGCAAGTATCGGCCTTCTGCCGCGGACGGCCGTAACACCATTGGAAGA
ACCAACCACAGACACCGCCTCCTTACCACGCGCAACTCACGATATGCCGC
CGATTCCCCCGCGAACGTTACCTGTGCCCCCGCGCCGAAACGCCCCTGTA
CCCGACCCGGTCTTCGTCGATACATATCTCACGAACGACGCGATACCCCA
TTTACCTGACAACCGATCGCCCGACTCCCGCAGCTCCCATGCACAGCACC
GATTTCCCCACGAATTTACCTCAAACATGCAAGCAGAATACCGCACGCTT
GACACCAGGCGCGTACCGCGAGTTCAGCTCCTACAAATCTCGCCCCACAC
GGACAGAACGGCTGCCACGCAACTTCTCGTGCAATCCATGCGCGATGCCT
TGTCAGGAATTTTTTATGTAGCTGACCCGTGAGGTTCGTTGACCATGAGG
TTCCCTACATGAGTTCCCGGCTGGCATGCACCACTTCTGAAACTAACGAA
AGCTGCCATTATACCCAACCGCGATGACACGCACACCTTACACCGCCTCG
TCGATGACCTTTTTGCCCAACTCCAGAAAAGGCTAGCTTCCGGCGTAGAC
GGACCCGGAGCGTTCAAGACTCTTTTGACGAACGTAGCGGATCACTTTGA
CCG
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Coding sequence (CDS) from alignment at F-distichus_contig10276:9846..11048-

>mRNA_F-distichus_contig10276.243.1 ID=mRNA_F-distichus_contig10276.243.1|Name=mRNA_F-distichus_contig10276.243.1|organism=Fucus distichus monoicous|type=CDS|length=534bp|location=Sequence derived from alignment at F-distichus_contig10276:9846..11048- (Fucus distichus monoicous)
ATGTACTGCGCTGGGTATTCCCCCACATGGTTCTCGGAGGCTATCGGTAA
GACTCGAGACAGCCGCAACAGGAACCGCCGCGTACGGATCGACTCCTCCG
CCAGCGACCGTTACGTTGAACCGCGCCGACCACGTTACCGCGAAGACTCC
GCCAGCGGCCGCGGAAAAGCAAAACGGGTAATGGCGGCACTTACCACGGA
TAGCGATACTGAATCGGACTCTCCTGCTGCTTCTGAACGCGATAAACGGA
CCCACAGATGTACTGCGCTGGGTATTCCCCCACATGGTTCTCGGAGGCTA
TCGGTAAGACTCGAGACAGCCGCAACAGGAACCGCCGCGTACGGATCGAC
TCCTCCGCCAGCGACCGTTACGTTGAACCGCGCCGACCACGTTACCGCGA
AGACTCCGCCAGCGGCCGCGGAAAAGCAAAACGGGTAATGGCGGCACTTA
CCACGGATAGCGATACTGAATCGGACTCTCCTGCTGCTTCTGAACGCGAT
AAACGGACCCACAGAAAAGGCTAGAAAAGGCTAG
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