mRNA_F-distichus_contig10257.223.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig10257.223.1
Unique NamemRNA_F-distichus_contig10257.223.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig10257.223.1 vs. uniprot
Match: D7FLP0_ECTSI (Peptidylprolyl isomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLP0_ECTSI)

HSP 1 Score: 107 bits (266), Expect = 4.280e-26
Identity = 51/63 (80.95%), Postives = 57/63 (90.48%), Query Frame = 1 
Query:   19 LIWRTGMKQVIVGMDKGVEGMRVGGSREIAIPSTLGYGARGTGPIPANQDLMFRVELIDVLGK 207
            L +R GMK VI GMD+GVEGMRVGGSREI+IP+ LGYGARGTGPIP NQDL+FRVEL+DVLGK
Sbjct:  307 LRFRVGMKNVIAGMDRGVEGMRVGGSREISIPAALGYGARGTGPIPPNQDLVFRVELVDVLGK 369
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BLAST of mRNA_F-distichus_contig10257.223.1 vs. uniprot
Match: A0A6H5JKN3_9PHAE (Peptidylprolyl isomerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKN3_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 1.270e-25
Identity = 51/63 (80.95%), Postives = 57/63 (90.48%), Query Frame = 1 
Query:   19 LIWRTGMKQVIVGMDKGVEGMRVGGSREIAIPSTLGYGARGTGPIPANQDLMFRVELIDVLGK 207
            L +R GMK VI GMD+GVEGMRVGGSREI+IP+ LGYGARGTGPIP NQDL+FRVEL+DVLGK
Sbjct:  422 LQFRVGMKNVIAGMDRGVEGMRVGGSREISIPAALGYGARGTGPIPPNQDLVFRVELVDVLGK 484
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BLAST of mRNA_F-distichus_contig10257.223.1 vs. uniprot
Match: A0A7S2D527_9STRA (Peptidylprolyl isomerase n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D527_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 5.280e-16
Identity = 34/59 (57.63%), Postives = 45/59 (76.27%), Query Frame = 1 
Query:   25 WRTGMKQVIVGMDKGVEGMRVGGSREIAIPSTLGYGARGTGPIPANQDLMFRVELIDVL 201
            +R G+++V+ GMDKGVEGM+VGG REI IP  +GYG +  GPIP N  L F+VELI ++
Sbjct:  104 FRLGLREVVAGMDKGVEGMKVGGHREIKIPPAMGYGNKAVGPIPPNSTLTFKVELIAIV 162
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BLAST of mRNA_F-distichus_contig10257.223.1 vs. uniprot
Match: A0A835YI76_9STRA (Peptidylprolyl isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YI76_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 1.080e-15
Identity = 36/61 (59.02%), Postives = 47/61 (77.05%), Query Frame = 1 
Query:   25 WRTGMKQVIVGMDKGVEGMRVGGSREIAIPSTLGYGARGTGPIPANQDLMFRVELIDVLGK 207
            +R G+ +VI GM++GVEGMRVGG RE+ IP+ L YG  G GPI  NQDL+F +EL+DV G+
Sbjct:  399 FRVGLGRVIKGMERGVEGMRVGGQREVYIPAALAYGKSGAGPIGPNQDLVFHIELVDVGGR 459
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BLAST of mRNA_F-distichus_contig10257.223.1 vs. uniprot
Match: UPI001E4F5B1A (FKBP-type peptidyl-prolyl cis-trans isomerase n=1 Tax=Massilia sp. IC2-278 TaxID=2887200 RepID=UPI001E4F5B1A)

HSP 1 Score: 75.5 bits (184), Expect = 1.330e-15
Identity = 38/65 (58.46%), Postives = 46/65 (70.77%), Query Frame = 1 
Query:    4 VSGECLIWRTGMKQVIVGMDKGVEGMRVGGSREIAIPSTLGYGARGTGPIPANQDLMFRVELIDV 198
            V G    +  GM  VI G D+GV GM+VGG R + IPS LGYGARG+GPIP N +L+F VEL+DV
Sbjct:   89 VGGAPFTFPLGMGAVIKGWDEGVVGMKVGGKRTLIIPSPLGYGARGSGPIPPNANLIFDVELVDV 153
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BLAST of mRNA_F-distichus_contig10257.223.1 vs. uniprot
Match: A0A7S2HCT7_9STRA (Peptidylprolyl isomerase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HCT7_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 1.360e-15
Identity = 36/60 (60.00%), Postives = 47/60 (78.33%), Query Frame = 1 
Query:   19 LIWRTGMKQVIVGMDKGVEGMRVGGSREIAIPSTLGYGARGTGPIPANQDLMFRVELIDV 198
            L +R G+++V+ GMD G+EGMRVGG REI IP+ +GYG + TGPIPAN DL F VEL+ +
Sbjct:  350 LSFRVGLREVVPGMDIGLEGMRVGGIREIHIPAAMGYGKKQTGPIPANSDLKFEVELLSI 409
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BLAST of mRNA_F-distichus_contig10257.223.1 vs. uniprot
Match: A0A7L9TZ61_9BURK (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Massilia sp. LPB0304 TaxID=2769491 RepID=A0A7L9TZ61_9BURK)

HSP 1 Score: 74.7 bits (182), Expect = 2.030e-15
Identity = 38/65 (58.46%), Postives = 44/65 (67.69%), Query Frame = 1 
Query:    4 VSGECLIWRTGMKQVIVGMDKGVEGMRVGGSREIAIPSTLGYGARGTGPIPANQDLMFRVELIDV 198
            V GE   +  GM  VI G D+GV GM+VGG R + IPS LGYGARG GPIP    L+F VEL+DV
Sbjct:   80 VGGEPFSFPLGMGAVIKGWDQGVAGMKVGGKRTLVIPSELGYGARGAGPIPPGATLLFDVELLDV 144
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BLAST of mRNA_F-distichus_contig10257.223.1 vs. uniprot
Match: A0A3S0PET7_9GAMM (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Dyella dinghuensis TaxID=1920169 RepID=A0A3S0PET7_9GAMM)

HSP 1 Score: 73.9 bits (180), Expect = 3.780e-15
Identity = 38/65 (58.46%), Postives = 47/65 (72.31%), Query Frame = 1 
Query:    7 SGECLIWRTGMKQVIVGMDKGVEGMRVGGSREIAIPSTLGYGARGTG-PIPANQDLMFRVELIDV 198
            SG  L +  G  QV+ GMDKGV+GMRVGG RE+ IPS+LGYG RG G  IP N  L+F +EL++V
Sbjct:   77 SGHPLTFTIGADQVVPGMDKGVKGMRVGGKREVIIPSSLGYGRRGAGGDIPPNSALIFDIELMEV 141
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BLAST of mRNA_F-distichus_contig10257.223.1 vs. uniprot
Match: UPI0017854D08 (FKBP-type peptidyl-prolyl cis-trans isomerase n=1 Tax=unclassified Massilia TaxID=2609279 RepID=UPI0017854D08)

HSP 1 Score: 73.9 bits (180), Expect = 4.150e-15
Identity = 38/65 (58.46%), Postives = 44/65 (67.69%), Query Frame = 1 
Query:    4 VSGECLIWRTGMKQVIVGMDKGVEGMRVGGSREIAIPSTLGYGARGTGPIPANQDLMFRVELIDV 198
            V G+   +  GM  VI G D+GV GM+VGG R + IPS LGYGARG GPIP    L+F VELIDV
Sbjct:   81 VGGDPFTFPLGMGGVIKGWDQGVAGMKVGGKRTLIIPSELGYGARGAGPIPPGATLLFDVELIDV 145
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BLAST of mRNA_F-distichus_contig10257.223.1 vs. uniprot
Match: A0A1A0H1X0_9ASCO (Peptidylprolyl isomerase n=1 Tax=Metschnikowia bicuspidata var. bicuspidata NRRL YB-4993 TaxID=869754 RepID=A0A1A0H1X0_9ASCO)

HSP 1 Score: 71.6 bits (174), Expect = 2.760e-14
Identity = 35/66 (53.03%), Postives = 45/66 (68.18%), Query Frame = 1 
Query:   10 GECLIWRTGMKQVIVGMDKGVEGMRVGGSREIAIPSTLGYGARGTGPIPANQDLMFRVELIDVLGK 207
            G  ++++ G  +VI G D+G+  M VG  R + IPS LGYG R  GPIPAN DL+F VEL+DV GK
Sbjct:   66 GRPIVFKLGTGRVIKGWDQGILDMCVGEQRTLYIPSELGYGLRNVGPIPANSDLIFDVELVDVSGK 131
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig10257.223.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLP0_ECTSI4.280e-2680.95Peptidylprolyl isomerase n=1 Tax=Ectocarpus silicu... [more]
A0A6H5JKN3_9PHAE1.270e-2580.95Peptidylprolyl isomerase n=1 Tax=Ectocarpus sp. CC... [more]
A0A7S2D527_9STRA5.280e-1657.63Peptidylprolyl isomerase n=1 Tax=Florenciella parv... [more]
A0A835YI76_9STRA1.080e-1559.02Peptidylprolyl isomerase n=1 Tax=Tribonema minus T... [more]
UPI001E4F5B1A1.330e-1558.46FKBP-type peptidyl-prolyl cis-trans isomerase n=1 ... [more]
A0A7S2HCT7_9STRA1.360e-1560.00Peptidylprolyl isomerase n=1 Tax=Dictyocha speculu... [more]
A0A7L9TZ61_9BURK2.030e-1558.46Peptidyl-prolyl cis-trans isomerase n=1 Tax=Massil... [more]
A0A3S0PET7_9GAMM3.780e-1558.46Peptidyl-prolyl cis-trans isomerase n=1 Tax=Dyella... [more]
UPI0017854D084.150e-1558.46FKBP-type peptidyl-prolyl cis-trans isomerase n=1 ... [more]
A0A1A0H1X0_9ASCO2.760e-1453.03Peptidylprolyl isomerase n=1 Tax=Metschnikowia bic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig10257contigF-distichus_contig10257:10148..10875 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score109.4
Seed ortholog evalue7e-22
Seed eggNOG ortholog2880.D7FLP0
Preferred nameFKBP15
KEGG koko:K01802,ko:K07466,ko:K14826,ko:K17478
KEGG Pathwayko03030,ko03420,ko03430,ko03440,ko03460,map03030,map03420,map03430,map03440,map03460
KEGG ModuleM00288
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000075,GO:0000412,GO:0000413,GO:0000414,GO:0000415,GO:0000785,GO:0000792,GO:0000976,GO:0000977,GO:0000978,GO:0000987,GO:0001012,GO:0001067,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003755,GO:0003824,GO:0005488,GO:0005515,GO:0005527,GO:0005528,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005730,GO:0005737,GO:0005829,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006457,GO:0006464,GO:0006807,GO:0006996,GO:0007049,GO:0007154,GO:0007165,GO:0008144,GO:0008150,GO:0008152,GO:0009507,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009719,GO:0009725,GO:0009755,GO:0009892,GO:0009894,GO:0009895,GO:0009987,GO:0010033,GO:0010506,GO:0010507,GO:0010563,GO:0010564,GO:0010605,GO:0010639,GO:0010921,GO:0010923,GO:0010948,GO:0016020,GO:0016043,GO:0016241,GO:0016242,GO:0016569,GO:0016570,GO:0016853,GO:0016859,GO:0018193,GO:0018208,GO:0019220,GO:0019222,GO:0019538,GO:0022402,GO:0022414,GO:0022607,GO:0023052,GO:0030522,GO:0031056,GO:0031057,GO:0031060,GO:0031061,GO:0031323,GO:0031324,GO:0031329,GO:0031330,GO:0031399,GO:0031400,GO:0031497,GO:0031974,GO:0031976,GO:0031981,GO:0031984,GO:0032268,GO:0032269,GO:0032870,GO:0033043,GO:0033044,GO:0033313,GO:0034357,GO:0034622,GO:0034728,GO:0035303,GO:0035305,GO:0035626,GO:0036211,GO:0040020,GO:0042221,GO:0042393,GO:0042651,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043565,GO:0043933,GO:0044085,GO:0044092,GO:0044212,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0045786,GO:0045835,GO:0045936,GO:0048519,GO:0048523,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051174,GO:0051246,GO:0051248,GO:0051276,GO:0051321,GO:0051336,GO:0051346,GO:0051445,GO:0051447,GO:0051598,GO:0051716,GO:0051726,GO:0051783,GO:0051784,GO:0055035,GO:0060255,GO:0061077,GO:0065003,GO:0065004,GO:0065007,GO:0065009,GO:0070013,GO:0070594,GO:0070887,GO:0071103,GO:0071310,GO:0071495,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0097159,GO:0140096,GO:1901363,GO:1901564,GO:1902275,GO:1903046,GO:1905268,GO:1990837,GO:2000241,GO:2000242,GO:2001251
EggNOG free text desc.histone peptidyl-prolyl isomerization
EggNOG OGsCOG0545@1,KOG0552@2759
EC5.2.1.8
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01009,ko03000,ko03009,ko03032,ko03110,ko03400,ko04812
Exons2
Model size210
Cds size210
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928942.775275-CDS-F-distichus_contig10257:10147..102321622928942.775275-CDS-F-distichus_contig10257:10147..10232Fucus distichus monoicousCDSF-distichus_contig10257 10148..10232 -
1690885075.982527-CDS-F-distichus_contig10257:10147..102321690885075.982527-CDS-F-distichus_contig10257:10147..10232Fucus distichus monoicousCDSF-distichus_contig10257 10148..10232 -
1622928942.790094-CDS-F-distichus_contig10257:10750..108751622928942.790094-CDS-F-distichus_contig10257:10750..10875Fucus distichus monoicousCDSF-distichus_contig10257 10751..10875 -
1690885075.9978437-CDS-F-distichus_contig10257:10750..108751690885075.9978437-CDS-F-distichus_contig10257:10750..10875Fucus distichus monoicousCDSF-distichus_contig10257 10751..10875 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig10257.223.1prot_F-distichus_contig10257.223.1Fucus distichus monoicouspolypeptideF-distichus_contig10257 10148..10875 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig10257.223.1

>prot_F-distichus_contig10257.223.1 ID=prot_F-distichus_contig10257.223.1|Name=mRNA_F-distichus_contig10257.223.1|organism=Fucus distichus monoicous|type=polypeptide|length=70bp
MVSGECLIWRTGMKQVIVGMDKGVEGMRVGGSREIAIPSTLGYGARGTGP
IPANQDLMFRVELIDVLGK*
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mRNA from alignment at F-distichus_contig10257:10148..10875-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig10257.223.1 ID=mRNA_F-distichus_contig10257.223.1|Name=mRNA_F-distichus_contig10257.223.1|organism=Fucus distichus monoicous|type=mRNA|length=728bp|location=Sequence derived from alignment at F-distichus_contig10257:10148..10875- (Fucus distichus monoicous)
ATGGTATCGGGTGAATGTTTGATTTGGCGAACAGGCATGAAGCAGGTGAT
CGTCGGCATGGACAAGGGCGTGGAAGGCATGCGCGTTGGCGGCAGCCGAG
AGATCGCAATACCGTCGACTCTGGGGTGAGAGATCGCCGGGTTTTATTTT
TATTTTTTTGTTTGTTTTAAATCTCACTTATAGCCGATAGATCTCATAAT
TGCCATCCTGCCTGGGCAAAAATTAAATCCAACCGGAAGGGCGGAAATAA
GGATAAGGGGTACACCCAGGCCCTTCGCTATAGTAATTAACATATATATA
GAACCTAACCCGAACCCAAGGTCCGCAGTATATATATGTTAATTACAATA
GGAAGGGCCTGGGCGTACCCCTTATTTCCGCCCTTCTGGGTGGATTTAAT
AATTTCGTCCTGCCTGTGGTCACAAAGGAAGAATGACAAGAAAGCTGCAC
TACAGCAGCGAGAGGAATAGCAGTATGGTCTGAAAATATTACGGCGGACT
AAATTTGAAAGAACGGGAGAAAACGGTGGCACTCTTGCTACTGGAGGTCT
TTGGGTTGAAATGAAACCAAATGAAACGGTTGTCGTTGTTGAGAAACTGA
CGTCCGTGTCTACTTTTGGCGACTGTCTCCGGCTGTCACAAAGGTACGGC
GCTCGTGGAACAGGGCCTATTCCTGCAAACCAAGACCTCATGTTCCGGGT
GGAGCTGATCGACGTCCTGGGAAAATGA
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Coding sequence (CDS) from alignment at F-distichus_contig10257:10148..10875-

>mRNA_F-distichus_contig10257.223.1 ID=mRNA_F-distichus_contig10257.223.1|Name=mRNA_F-distichus_contig10257.223.1|organism=Fucus distichus monoicous|type=CDS|length=420bp|location=Sequence derived from alignment at F-distichus_contig10257:10148..10875- (Fucus distichus monoicous)
ATGGTATCGGGTGAATGTTTGATTTGGCGAACAGGCATGAAGCAGGTGAT
CGTCGGCATGGACAAGGGCGTGGAAGGCATGCGCGTTGGCGGCAGCCGAG
AGATCGCAATACCGTCGACTCTGGGATGGTATCGGGTGAATGTTTGATTT
GGCGAACAGGCATGAAGCAGGTGATCGTCGGCATGGACAAGGGCGTGGAA
GGCATGCGCGTTGGCGGCAGCCGAGAGATCGCAATACCGTCGACTCTGGG
GTACGGCGCTCGTGGAACAGGGCCTATTCCTGCAAACCAAGACCTCATGT
TCCGGGTGGAGCTGATCGACGTCCTGGGAAAATGAGTACGGCGCTCGTGG
AACAGGGCCTATTCCTGCAAACCAAGACCTCATGTTCCGGGTGGAGCTGA
TCGACGTCCTGGGAAAATGA
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