mRNA_F-distichus_contig1025.214.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig1025.214.1
Unique NamemRNA_F-distichus_contig1025.214.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
[Close]
BLAST of mRNA_F-distichus_contig1025.214.1 vs. uniprot
Match: D7G7G6_ECTSI (WW domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7G6_ECTSI)

HSP 1 Score: 73.9 bits (180), Expect = 5.550e-10
Identity = 54/103 (52.43%), Postives = 60/103 (58.25%), Query Frame = 1 
Query:    4 EMEIDVMKGLVLAQQQRIERQRKKMLELERDLRDYKTEVLPGGEWPQETSSLTAPRLSRLPATSNSTLRPSRSLPEKLDLAGERGVAITPSVTSRDGCKSDRD 312
            EME+DVMKGLVLAQ QRIERQR +M ELERDLRDY+   + GGEWP         R   LPA     L PSRS P  LD       A T +  S +G K D D
Sbjct:  329 EMEVDVMKGLVLAQHQRIERQRTRMQELERDLRDYRRATVLGGEWPPPPWL----RQLNLPAWKGG-LTPSRSAPAGLDRFTGARFAATGN-NSGNGSKIDND 425
[Close]
BLAST of mRNA_F-distichus_contig1025.214.1 vs. uniprot
Match: A0A6H5KG19_9PHAE (WW domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG19_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 4.250e-7
Identity = 33/46 (71.74%), Postives = 38/46 (82.61%), Query Frame = 1 
Query:    4 EMEIDVMKGLVLAQQQRIERQRKKMLELERDLRDYKTEVLPGGEWP 141
            EME+DVMKGLVLAQ QRIE+QR +M ELER LRDY+   + GGEWP
Sbjct:  453 EMEVDVMKGLVLAQHQRIEKQRTRMQELERSLRDYRRATVIGGEWP 498
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig1025.214.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G7G6_ECTSI5.550e-1052.43WW domain-containing protein n=1 Tax=Ectocarpus si... [more]
A0A6H5KG19_9PHAE4.250e-771.74WW domain-containing protein n=1 Tax=Ectocarpus sp... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig1025contigF-distichus_contig1025:14609..17316 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size1729
Cds size918
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig1025.214.1prot_F-distichus_contig1025.214.1Fucus distichus monoicouspolypeptideF-distichus_contig1025 14615..16511 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928941.894286-UTR-F-distichus_contig1025:14608..146141622928941.894286-UTR-F-distichus_contig1025:14608..14614Fucus distichus monoicousUTRF-distichus_contig1025 14609..14614 +
1690885075.5093203-UTR-F-distichus_contig1025:14608..146141690885075.5093203-UTR-F-distichus_contig1025:14608..14614Fucus distichus monoicousUTRF-distichus_contig1025 14609..14614 +
1622928941.9943-UTR-F-distichus_contig1025:16511..173161622928941.9943-UTR-F-distichus_contig1025:16511..17316Fucus distichus monoicousUTRF-distichus_contig1025 16512..17316 +
1690885075.5573585-UTR-F-distichus_contig1025:16511..173161690885075.5573585-UTR-F-distichus_contig1025:16511..17316Fucus distichus monoicousUTRF-distichus_contig1025 16512..17316 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928941.9097853-CDS-F-distichus_contig1025:14614..147091622928941.9097853-CDS-F-distichus_contig1025:14614..14709Fucus distichus monoicousCDSF-distichus_contig1025 14615..14709 +
1690885075.5214508-CDS-F-distichus_contig1025:14614..147091690885075.5214508-CDS-F-distichus_contig1025:14614..14709Fucus distichus monoicousCDSF-distichus_contig1025 14615..14709 +
1622928941.9261577-CDS-F-distichus_contig1025:15021..151381622928941.9261577-CDS-F-distichus_contig1025:15021..15138Fucus distichus monoicousCDSF-distichus_contig1025 15022..15138 +
1690885075.5295222-CDS-F-distichus_contig1025:15021..151381690885075.5295222-CDS-F-distichus_contig1025:15021..15138Fucus distichus monoicousCDSF-distichus_contig1025 15022..15138 +
1622928941.946749-CDS-F-distichus_contig1025:15425..159411622928941.946749-CDS-F-distichus_contig1025:15425..15941Fucus distichus monoicousCDSF-distichus_contig1025 15426..15941 +
1690885075.5381136-CDS-F-distichus_contig1025:15425..159411690885075.5381136-CDS-F-distichus_contig1025:15425..15941Fucus distichus monoicousCDSF-distichus_contig1025 15426..15941 +
1622928941.9647942-CDS-F-distichus_contig1025:16321..165111622928941.9647942-CDS-F-distichus_contig1025:16321..16511Fucus distichus monoicousCDSF-distichus_contig1025 16322..16511 +
1690885075.5473688-CDS-F-distichus_contig1025:16321..165111690885075.5473688-CDS-F-distichus_contig1025:16321..16511Fucus distichus monoicousCDSF-distichus_contig1025 16322..16511 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig1025.214.1

>prot_F-distichus_contig1025.214.1 ID=prot_F-distichus_contig1025.214.1|Name=mRNA_F-distichus_contig1025.214.1|organism=Fucus distichus monoicous|type=polypeptide|length=306bp
MEIDVMKGLVLAQQQRIERQRKKMLELERDLRDYKTEVLPGGEWPQETSS
LTAPRLSRLPATSNSTLRPSRSLPEKLDLAGERGVAITPSVTSRDGCKSD
RDPVSSKPLSLHSKQRVVQWAGLCQSCTEQEQSDELKSTRRSSAFDGRLS
SSAEGATSGAGTRKQWRSPSGCADTFVSGCLSSRQARSLGGSPPQHASEQ
QNTPPREGETGGLKVEEDALPGSRVPAIGSKTGHARNFSAGTRLGTTRST
RMRLTANPRQRSLDHCKHGQHVAAVNCGIACESNIAGSKPSVALGAAANA
FANSV*
back to top

mRNA from alignment at F-distichus_contig1025:14609..17316+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig1025.214.1 ID=mRNA_F-distichus_contig1025.214.1|Name=mRNA_F-distichus_contig1025.214.1|organism=Fucus distichus monoicous|type=mRNA|length=2708bp|location=Sequence derived from alignment at F-distichus_contig1025:14609..17316+ (Fucus distichus monoicous)
CCGGAAATGGAGATTGACGTGATGAAGGGCTTAGTGTTGGCGCAGCAGCA
GAGGATTGAGAGACAAAGAAAAAAAATGCTCGAGCTCGAGCGAGACCTAA
GGTACATGTGGAGAGCGGATTAGCCACCCTCGAACTGTCATTCGAGAGAC
GGGTCTAAGGCCCAAAACTAATACATGTCATCAGGTAGACAGTCCCACGC
TGCTGTGGACATCGCTGAACCTTGATTAGGTTCGTCGCACGTCGACCTTG
ACGATTTTTTCGCGGTGAAGTGCAGCTGGTCATGCACGTCACGCAGTCTT
CTTACCACAAATAACCACCACGTTCTTCTGGACAACAATAACGCAGACTT
GTTGAAGCTACGAATCGTGGGCGTGAGATAACCCACGAATGAATCGACTG
CCGTTTTTTCCAGGGACTACAAAACAGAGGTGTTACCCGGCGGTGAATGG
CCTCAGGAAACATCGTCACTAACGGCGCCAAGGCTTTCAAGGCTGCCCGC
AACATCCAACTCAACACTTCGGCCATCGAGGTTGTTTCTTGGTTGCGGCG
GCGAAATGCCACCACGAGGAAAGCAAACAGAACCAGAATGCATCCAAAAA
TGATCCGTTGGTCTAATCGGTGTTGTTTGTTGATTTCATGGACATGTTTC
GGCTGCTGTGCCCAAAAGCGAAGAGGCGTGATGGATCGGTTCTCCTTCAG
CACGTACACCCTCTATTCTTACAGGGTAGGTATCAGACAGCTTTCACTTA
TCTTTCCATGTAGTGGATGGACTCTTTGAGCAGCGAGAGATGGAACGGTC
TTCGTTCTCTCTGGCAGATCTTTACCGGAGAAACTGGATCTCGCCGGAGA
GCGTGGAGTTGCGATCACTCCCTCCGTGACTTCTCGAGACGGCTGCAAGA
GCGATCGCGACCCGGTCTCGTCGAAACCCCTCAGCTTACACTCGAAGCAG
CGAGTTGTTCAATGGGCAGGGTTATGTCAATCTTGCACAGAGCAGGAGCA
AAGCGACGAGCTGAAGAGTACGAGACGTTCCAGCGCATTCGATGGGAGGC
TTTCTTCAAGCGCCGAAGGTGCAACAAGTGGCGCTGGTACACGGAAGCAA
TGGCGAAGTCCTTCAGGCTGCGCGGACACGTTCGTGTCCGGATGCCTCAG
TTCAAGGCAGGCGAGGTCTTTGGGGGGGTCACCTCCTCAGCACGCAAGCG
AACAACAGAATACTCCTCCAAGAGAGGGAGAGACAGGTGGACTGAAGGTT
GAAGAGGACGCGCTGCCGGGGAGCCGGGTGCCAGCGATTGGCTCGAAAAC
GGGGCACGCTCGCAACTTCTCTGCTGGCACAAGGTAGCGCTTTGCAATCG
GTATACTTCCCTGGCATGACTCCTCATCATCATAGGTAGACCGGTCCCCA
ACATTTACTCGCTCACAGAACGTGAAAACTTGCACGAAAAAACGCTTTAG
ACTCTTGATGGAGGGCCTAGGGGAAGGGAGGCCGAACCAACGTCACGCCG
TAAGGCCGCGATATCATTTGTGGGTCAGAGATAGAAAGGGTTTGTGCCTG
TGCGCACGAGAGGGAGGTAGAGATGAGAAATATAAGGCAGTACAGCACAC
TAGTGCTGCTAAGTGTCTTAGAACGTTTCCGCTAAAACACGCCTGTTCAC
TCACTGATGATCTTGCAAACCATGCATGCTTTTAACGACGGCCAAATTTA
CCGCCCGCTGTAGGCTGGGGACGACAAGATCAACTCGGATGAGGCTGACC
GCAAACCCCAGGCAGCGCTCTCTCGACCACTGCAAACACGGACAGCATGT
CGCCGCAGTAAACTGTGGAATCGCCTGCGAAAGCAATATCGCCGGTTCGA
AGCCCTCTGTGGCACTGGGAGCTGCTGCAAACGCTTTCGCCAACTCCGTT
TAGACGGCAGCGGCAGCAAATTGGAGAACTCCGGGTCTTAGATAGATAGC
GTGTCCGAAATGCCCCGTCTCTGAATGTCTCCATAGGGGAACGTGTAAAA
GGAAGTCGCAGTGTGCACAGGGGACGAAAACGACAAACGGCTCGCCGGAA
GATCAACCGGTCTCACGCGAAACGCGGACAGCAGCAGTAGTCAATGCAAC
AACAATATCGGCGGTGACCTGACCATCAGGAACTCCAGCCACAATCGCGC
CCCTGAAAAGCCTGCAGGTGTCGAGGGTAAGAAGCTGAGCGCCGCGCGAG
AGAGGACGGCGGTCTACCGAGAAGACGCTGCTTGTGATCACTCCGCCAAT
CATGACTGCTGACGAAATTGCGAGGCGCCTAATAGTGGCGGGTAGGATAC
AGGTGGTCAGTAGACGGAGGCGGGAGAATACTCAGGGCGACAGTGCTGCA
GTTGACCGTAGTATTAGCGACGAACGGTAGACACCTTGTAGCCCCGCTTG
CCGAATCGTGGGGTGCCGACACTACTGCAATATGTACAGCTGCTGCGGTA
ATCTTTAGGCTATAAATAAAAGTGGTGTTGCAGAAGCGACAAGTATTCTT
GTAGTGCCGGCGAGACAAGGCCTGGACCTTGAACGCATCATTTTGAGACC
TCGAGGCGTCCGTCCCAGGTCGGTCTGAGAGGCACCTGCGCATCCCTCTC
ACTTGCCTCGATAGTGACTGAAATTATAATCAGATTTATGACTCATTCCG
TTGGGAACACGGACCCGTCGATCGGTACACGGATCCAGCGTTCGAAAAAT
GGATTCAG
back to top

Coding sequence (CDS) from alignment at F-distichus_contig1025:14609..17316+

>mRNA_F-distichus_contig1025.214.1 ID=mRNA_F-distichus_contig1025.214.1|Name=mRNA_F-distichus_contig1025.214.1|organism=Fucus distichus monoicous|type=CDS|length=1836bp|location=Sequence derived from alignment at F-distichus_contig1025:14609..17316+ (Fucus distichus monoicous)
ATGGAGATTGACGTGATGAAGGGCTTAGTGTTGGCGCAGCAGCAGAGGAT
TGAGAGACAAAGAAAAAAAATGCTCGAGCTCGAGCGAGACCTAAGATGGA
GATTGACGTGATGAAGGGCTTAGTGTTGGCGCAGCAGCAGAGGATTGAGA
GACAAAGAAAAAAAATGCTCGAGCTCGAGCGAGACCTAAGGGACTACAAA
ACAGAGGTGTTACCCGGCGGTGAATGGCCTCAGGAAACATCGTCACTAAC
GGCGCCAAGGCTTTCAAGGCTGCCCGCAACATCCAACTCAACACTTCGGC
CATCGAGGGACTACAAAACAGAGGTGTTACCCGGCGGTGAATGGCCTCAG
GAAACATCGTCACTAACGGCGCCAAGGCTTTCAAGGCTGCCCGCAACATC
CAACTCAACACTTCGGCCATCGAGATCTTTACCGGAGAAACTGGATCTCG
CCGGAGAGCGTGGAGTTGCGATCACTCCCTCCGTGACTTCTCGAGACGGC
TGCAAGAGCGATCGCGACCCGGTCTCGTCGAAACCCCTCAGCTTACACTC
GAAGCAGCGAGTTGTTCAATGGGCAGGGTTATGTCAATCTTGCACAGAGC
AGGAGCAAAGCGACGAGCTGAAGAGTACGAGACGTTCCAGCGCATTCGAT
GGGAGGCTTTCTTCAAGCGCCGAAGGTGCAACAAGTGGCGCTGGTACACG
GAAGCAATGGCGAAGTCCTTCAGGCTGCGCGGACACGTTCGTGTCCGGAT
GCCTCAGTTCAAGGCAGGCGAGGTCTTTGGGGGGGTCACCTCCTCAGCAC
GCAAGCGAACAACAGAATACTCCTCCAAGAGAGGGAGAGACAGGTGGACT
GAAGGTTGAAGAGGACGCGCTGCCGGGGAGCCGGGTGCCAGCGATTGGCT
CGAAAACGGGGCACGCTCGCAACTTCTCTGCTGGCACAAGATCTTTACCG
GAGAAACTGGATCTCGCCGGAGAGCGTGGAGTTGCGATCACTCCCTCCGT
GACTTCTCGAGACGGCTGCAAGAGCGATCGCGACCCGGTCTCGTCGAAAC
CCCTCAGCTTACACTCGAAGCAGCGAGTTGTTCAATGGGCAGGGTTATGT
CAATCTTGCACAGAGCAGGAGCAAAGCGACGAGCTGAAGAGTACGAGACG
TTCCAGCGCATTCGATGGGAGGCTTTCTTCAAGCGCCGAAGGTGCAACAA
GTGGCGCTGGTACACGGAAGCAATGGCGAAGTCCTTCAGGCTGCGCGGAC
ACGTTCGTGTCCGGATGCCTCAGTTCAAGGCAGGCGAGGTCTTTGGGGGG
GTCACCTCCTCAGCACGCAAGCGAACAACAGAATACTCCTCCAAGAGAGG
GAGAGACAGGTGGACTGAAGGTTGAAGAGGACGCGCTGCCGGGGAGCCGG
GTGCCAGCGATTGGCTCGAAAACGGGGCACGCTCGCAACTTCTCTGCTGG
CACAAGGCTGGGGACGACAAGATCAACTCGGATGAGGCTGACCGCAAACC
CCAGGCAGCGCTCTCTCGACCACTGCAAACACGGACAGCATGTCGCCGCA
GTAAACTGTGGAATCGCCTGCGAAAGCAATATCGCCGGTTCGAAGCCCTC
TGTGGCACTGGGAGCTGCTGCAAACGCTTTCGCCAACTCCGTTTAGGCTG
GGGACGACAAGATCAACTCGGATGAGGCTGACCGCAAACCCCAGGCAGCG
CTCTCTCGACCACTGCAAACACGGACAGCATGTCGCCGCAGTAAACTGTG
GAATCGCCTGCGAAAGCAATATCGCCGGTTCGAAGCCCTCTGTGGCACTG
GGAGCTGCTGCAAACGCTTTCGCCAACTCCGTTTAG
back to top