mRNA_F-distichus_contig9906.19350.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig9906.19350.1
Unique NamemRNA_F-distichus_contig9906.19350.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig9906.19350.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig9906contigF-distichus_contig9906:3290..4870 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1279
Cds size771
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig9906.19350.1prot_F-distichus_contig9906.19350.1Fucus distichus monoicouspolypeptideF-distichus_contig9906 3363..4133 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931172.4001667-UTR-F-distichus_contig9906:3289..33621622931172.4001667-UTR-F-distichus_contig9906:3289..3362Fucus distichus monoicousUTRF-distichus_contig9906 3290..3362 +
1690886189.7081497-UTR-F-distichus_contig9906:3289..33621690886189.7081497-UTR-F-distichus_contig9906:3289..3362Fucus distichus monoicousUTRF-distichus_contig9906 3290..3362 +
1622931172.4366267-UTR-F-distichus_contig9906:4133..41371622931172.4366267-UTR-F-distichus_contig9906:4133..4137Fucus distichus monoicousUTRF-distichus_contig9906 4134..4137 +
1690886189.7333176-UTR-F-distichus_contig9906:4133..41371690886189.7333176-UTR-F-distichus_contig9906:4133..4137Fucus distichus monoicousUTRF-distichus_contig9906 4134..4137 +
1622931172.4610603-UTR-F-distichus_contig9906:4439..48701622931172.4610603-UTR-F-distichus_contig9906:4439..4870Fucus distichus monoicousUTRF-distichus_contig9906 4440..4870 +
1690886189.7455177-UTR-F-distichus_contig9906:4439..48701690886189.7455177-UTR-F-distichus_contig9906:4439..4870Fucus distichus monoicousUTRF-distichus_contig9906 4440..4870 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931172.417902-CDS-F-distichus_contig9906:3362..41331622931172.417902-CDS-F-distichus_contig9906:3362..4133Fucus distichus monoicousCDSF-distichus_contig9906 3363..4133 +
1690886189.7183645-CDS-F-distichus_contig9906:3362..41331690886189.7183645-CDS-F-distichus_contig9906:3362..4133Fucus distichus monoicousCDSF-distichus_contig9906 3363..4133 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig9906.19350.1

>prot_F-distichus_contig9906.19350.1 ID=prot_F-distichus_contig9906.19350.1|Name=mRNA_F-distichus_contig9906.19350.1|organism=Fucus distichus monoicous|type=polypeptide|length=257bp
MVDVKNRKCRTEVCGKMPNSGMTDTKTVRYCSQHAPDGMDDVHCRKCIAE
GCGDIPSFGVIGEKTTEYCAGHASDGRVNIRSVTRKAEGCGKRRSFGVAG
TETAEYCAQHAVGGRVKVNSRKCRIGGRGKKMCFGVTNARTAEYGAQHAR
LKCNVDGYRERAVGQQHSGKETVGNIILSDGIHTTVHPPPTQASSPSGGS
RGSRKRVRHPETTSTTSKRAVARESTEGTVTMPDIGGRKSPVKRDSSMKT
EVQLSL*
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mRNA from alignment at F-distichus_contig9906:3290..4870+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig9906.19350.1 ID=mRNA_F-distichus_contig9906.19350.1|Name=mRNA_F-distichus_contig9906.19350.1|organism=Fucus distichus monoicous|type=mRNA|length=1581bp|location=Sequence derived from alignment at F-distichus_contig9906:3290..4870+ (Fucus distichus monoicous)
CGGCAAGAGGCCATCGTATGGGGTGGCAGGTTCGAAGAAGTCCGAGTACT
GTGCACAACACGCCCTGGAAGTGATGGTAGACGTCAAGAACAGGAAGTGC
AGAACCGAAGTTTGCGGCAAGATGCCGAACTCCGGAATGACAGATACTAA
AACGGTGAGGTACTGCTCACAGCACGCACCGGACGGGATGGATGACGTCC
ATTGCAGAAAGTGCATAGCCGAAGGATGCGGAGACATTCCGTCGTTCGGA
GTGATAGGTGAAAAAACCACGGAGTACTGTGCAGGGCATGCCTCGGACGG
GAGGGTCAATATCCGCAGCGTCACTCGCAAAGCCGAAGGCTGCGGCAAGA
GGCGATCGTTCGGAGTTGCAGGCACGGAAACGGCGGAGTACTGTGCACAG
CATGCCGTGGGTGGGAGGGTTAAGGTCAACAGCAGAAAGTGCAGAATCGG
AGGCCGCGGCAAGAAGATGTGTTTTGGAGTGACCAATGCAAGAACGGCGG
AGTACGGTGCTCAGCATGCCAGATTGAAATGCAATGTCGACGGATACAGG
GAGAGAGCCGTTGGACAACAACACTCCGGAAAGGAAACAGTTGGTAACAT
AATTCTGAGTGACGGCATACATACAACCGTTCATCCTCCTCCCACTCAGG
CAAGCTCTCCGTCGGGTGGTAGCCGGGGCTCTCGTAAGCGAGTAAGACAT
CCAGAAACCACGTCTACCACTTCGAAGCGAGCTGTCGCACGAGAGTCGAC
TGAAGGAACGGTGACTATGCCGGATATCGGTGGGCGAAAATCTCCCGTCA
AACGAGATTCTTCTATGAAGACGGAGGTGCAGCTCTCCTTGTAACCAGGT
ACGCTTCACGTGACCACAAGCTCAATCTGCTTAAATATAAGGTTTTATAT
GGCATCACTACAAATCCGGTGACCGGAGCTCTTTGTTGGTTTTTGCTTTT
GTTCGGATTGAATGAGTACCCTGTCTTGTTCGTAACTCTTGCCTTGTGTT
TCGTCGCAAGATTGTAAGTTCAGCTCAAGGGTCTCTCTTTTCCTCTTAGA
CCCTCGCGACCTTGCGTCTGCAGCTATTCCTTCGCGAAACAGACCACTCG
TGCTTACCCTAATTACATTGTTTGTCTGTTTCCCCGTATTTCGACTTCAG
GTGCTGTGGTCAAGATCGTGGTCATGATATTTGTATTATGGCTGCCGAGA
CGCTGGTGGTTCTGGTGAGAGTCGTACGTTTGCGTAACCTCGGAACAGCT
TCATTAGTTTCTACTGGTTACTTGCCATATCAGGCATACACACACTGCTG
TTCCATCCTCGAACTGGTACCAGAAGTCTTGATGTAGCGACAAGAAGTAT
CGGTAGATGGCACCGGACCCGAGGACGATGTTATGGAGGACGATCCTCTA
AATCCTACGGCCGTCCCGATTCCGATTTCGATGGGGGTGAGCGTTTTAGT
TTTGTAGAAAGTTCGTCGCGAATGCGCACTCGTCTGACAAATTAATGAGC
AGGTAAATGTACTGTTTGAAGTTTAGTCACAAGCCAGGCTCACATCGTAG
GGGTGGGGGTGATGAATGGGGTACCGAACTT
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Coding sequence (CDS) from alignment at F-distichus_contig9906:3290..4870+

>mRNA_F-distichus_contig9906.19350.1 ID=mRNA_F-distichus_contig9906.19350.1|Name=mRNA_F-distichus_contig9906.19350.1|organism=Fucus distichus monoicous|type=CDS|length=1542bp|location=Sequence derived from alignment at F-distichus_contig9906:3290..4870+ (Fucus distichus monoicous)
ATGGTAGACGTCAAGAACAGGAAGTGCAGAACCGAAGTTTGCGGCAAGAT
GCCGAACTCCGGAATGACAGATACTAAAACGGTGAGGTACTGCTCACAGC
ACGCACCGGACGGGATGGATGACGTCCATTGCAGAAAGTGCATAGCCGAA
GGATGCGGAGACATTCCGTCGTTCGGAGTGATAGGTGAAAAAACCACGGA
GTACTGTGCAGGGCATGCCTCGGACGGGAGGGTCAATATCCGCAGCGTCA
CTCGCAAAGCCGAAGGCTGCGGCAAGAGGCGATCGTTCGGAGTTGCAGGC
ACGGAAACGGCGGAGTACTGTGCACAGCATGCCGTGGGTGGGAGGGTTAA
GGTCAACAGCAGAAAGTGCAGAATCGGAGGCCGCGGCAAGAAGATGTGTT
TTGGAGTGACCAATGCAAGAACGGCGGAGTACGGTGCTCAGCATGCCAGA
TTGAAATGCAATGTCGACGGATACAGGGAGAGAGCCGTTGGACAACAACA
CTCCGGAAAGGAAACAGTTGGTAACATAATTCTGAGTGACGGCATACATA
CAACCGTTCATCCTCCTCCCACTCAGGCAAGCTCTCCGTCGGGTGGTAGC
CGGGGCTCTCGTAAGCGAGTAAGACATCCAGAAACCACGTCTACCACTTC
GAAGCGAGCTGTCGCACGAGAGTCGACTGAAGGAACGGTGACTATGCCGG
ATATCGGTGGGCGAAAATCTCCCGTCAAACGAGATTCTTCTATGAAGACG
GAGGTGCAGCTCTCCTTGTAAATGGTAGACGTCAAGAACAGGAAGTGCAG
AACCGAAGTTTGCGGCAAGATGCCGAACTCCGGAATGACAGATACTAAAA
CGGTGAGGTACTGCTCACAGCACGCACCGGACGGGATGGATGACGTCCAT
TGCAGAAAGTGCATAGCCGAAGGATGCGGAGACATTCCGTCGTTCGGAGT
GATAGGTGAAAAAACCACGGAGTACTGTGCAGGGCATGCCTCGGACGGGA
GGGTCAATATCCGCAGCGTCACTCGCAAAGCCGAAGGCTGCGGCAAGAGG
CGATCGTTCGGAGTTGCAGGCACGGAAACGGCGGAGTACTGTGCACAGCA
TGCCGTGGGTGGGAGGGTTAAGGTCAACAGCAGAAAGTGCAGAATCGGAG
GCCGCGGCAAGAAGATGTGTTTTGGAGTGACCAATGCAAGAACGGCGGAG
TACGGTGCTCAGCATGCCAGATTGAAATGCAATGTCGACGGATACAGGGA
GAGAGCCGTTGGACAACAACACTCCGGAAAGGAAACAGTTGGTAACATAA
TTCTGAGTGACGGCATACATACAACCGTTCATCCTCCTCCCACTCAGGCA
AGCTCTCCGTCGGGTGGTAGCCGGGGCTCTCGTAAGCGAGTAAGACATCC
AGAAACCACGTCTACCACTTCGAAGCGAGCTGTCGCACGAGAGTCGACTG
AAGGAACGGTGACTATGCCGGATATCGGTGGGCGAAAATCTCCCGTCAAA
CGAGATTCTTCTATGAAGACGGAGGTGCAGCTCTCCTTGTAA
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