mRNA_F-distichus_contig9845.19282.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig9845.19282.1
Unique NamemRNA_F-distichus_contig9845.19282.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
BLAST of mRNA_F-distichus_contig9845.19282.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE)

HSP 1 Score: 163 bits (413), Expect = 2.040e-39
Identity = 159/532 (29.89%), Postives = 238/532 (44.74%), Query Frame = 1
Query:    4 WRKAEETEMLGLVENYVYKQVAR-PKDKLVVGTKMLYT*KIGQDGKVEKYKCRLVAQGF*LVEGVHYTEKYSPTPATASIRMLLAMAVAKDRELRHFDAEQACLKANIDEKIYIEIPRGVPGVSG--------------GSRT------------------TEEGHLRTRTGGEVLDQQVL*RHYGDWIRAG--KCGSVCVTQRR*RRGGDGGGGTRKRHSCARQRPSDKG*IRD*AWTEAHIEGHGRRRVLHGLSHHKEQQGAQVEARPTLVHGVDGKNI*RQEGN*DTGCVRGANALKGGRTTEPGGGGNEEAPVPGGSGGATITRQDIACAVRAVATFCGNLGPAHKKAVMKIL*YLLHTK*WGIAYG-GQGCRLCMEAYSDSGFGAWLDTRRSVSGAVLVLAKGAISWHSRMQEVTASGTSEAEYVALPEVVNEILPRRQEQECMEPSMRVDAVNAFEDNEGAIKLATNRHASRRTKYIDVKHHLMRDASGARKVRVAYVRSEDQHADLLTKPLDMQKFYKHAKFILN 1491
            W  A   E+ GL+    +   A+ P    V+  + ++  K  + GK+ K K RLVA+GF    GV Y E +SPT   AS R+++A+A   + EL H+D EQA +++ +D ++++++P G   +SG               SRT                  ++   LR   G EV+    +  H  D + AG      V V            G  R    CA  R  + G I      E++I     R VL   +     + + + A PT     D +++   EG  D        +L                        A  TR DI+ AVRAVA        +H KA  KIL YLL T    + +            Y D+ F +  + RRSVSGA++++A   + W S+ Q+  +  TSEAEY+A+ + V E L      + + PS +   ++  EDNEGAI LA N  +S R+K+IDV+HH +R+ +    + V +V SE+QHAD+LTK L    F  H  F L 
Sbjct:  730 WEGAMSAEVEGLIRAGTFTLAAKVPIGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKYGVDYLETFSPTANAASHRLVVALACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDPCVLRFMMGDEVVGMVAI--HVDDILYAGTKSLAEVVVAALGDSLPTKNLGEVRFFLGCAFVRDREAGTIE--MSQESYI-----RSVLERFN---VCRTSSIPASPTN----DYRSVMEDEGAGDVPFREVVGSLM---------------------WIANQTRPDISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTLKFKPDNSVDASTLVYVDADFASKANDRRSVSGAIVLVASMPVVWISKTQKCVSQSTSEAEYLAMGDGVKEALFVNGMLQFLRPSAKPRKIDVLEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSEEQHADILTKALPRDLFEVHRDFALG 1224          
BLAST of mRNA_F-distichus_contig9845.19282.1 vs. uniprot
Match: A0A6H5KKK1_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK1_9PHAE)

HSP 1 Score: 162 bits (411), Expect = 3.060e-39
Identity = 159/532 (29.89%), Postives = 238/532 (44.74%), Query Frame = 1
Query:    4 WRKAEETEMLGLVENYVYKQVAR-PKDKLVVGTKMLYT*KIGQDGKVEKYKCRLVAQGF*LVEGVHYTEKYSPTPATASIRMLLAMAVAKDRELRHFDAEQACLKANIDEKIYIEIPRGVPGVSG--------------GSRT------------------TEEGHLRTRTGGEVLDQQVL*RHYGDWIRAG--KCGSVCVTQRR*RRGGDGGGGTRKRHSCARQRPSDKG*IRD*AWTEAHIEGHGRRRVLHGLSHHKEQQGAQVEARPTLVHGVDGKNI*RQEGN*DTGCVRGANALKGGRTTEPGGGGNEEAPVPGGSGGATITRQDIACAVRAVATFCGNLGPAHKKAVMKIL*YLLHTK*WGIAYG-GQGCRLCMEAYSDSGFGAWLDTRRSVSGAVLVLAKGAISWHSRMQEVTASGTSEAEYVALPEVVNEILPRRQEQECMEPSMRVDAVNAFEDNEGAIKLATNRHASRRTKYIDVKHHLMRDASGARKVRVAYVRSEDQHADLLTKPLDMQKFYKHAKFILN 1491
            W  A   E+ GL+    +   A+ P    V+  + ++  K  + GK+ K K RLVA+GF    GV Y E +SPT   AS R+++A+A   + EL H+D EQA +++ +D ++++++P G   +SG               SRT                  ++   LR   G EV+    +  H  D + AG      V V            G  R    CA  R  + G I      E++I     R VL   +     + + + A PT     D +++   EG  D        +L                        A  TR DI+ AVRAVA        +H KA  KIL YLL T    + +            Y D+ F +  + RRSVSGA++++A   + W S+ Q+  +  TSEAEY+A+ + V E L      + + PS +   ++  EDNEGAI LA N  +S R+K+IDV+HH +R+ +    + V +V SE+QHAD+LTK L    F  H  F L 
Sbjct:  463 WEGAMSAEVEGLIRAGTFTLAAKVPISCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKYGVDYLETFSPTANAASHRLVVALACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDPCVLRFMMGDEVVGMVAI--HVDDILYAGTKSLAEVVVAALGDSLPTKNLGEVRFFLGCAFVRDREAGTIE--MSQESYI-----RSVLERFN---VCRTSSIPASPTN----DYRSVMEDEGAGDVPFREVVGSLM---------------------WIANQTRPDISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTLKFKPDNSVDASTLVYVDADFASKANDRRSVSGAIVLVASMPVVWISKTQKCVSQSTSEAEYLAMGDGVKEALFVNGMLQFLRPSAKPRKIDVLEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSEEQHADILTKALPRDLFEVHRDFGLG 957          
BLAST of mRNA_F-distichus_contig9845.19282.1 vs. uniprot
Match: A0A6H5KEZ8_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEZ8_9PHAE)

HSP 1 Score: 147 bits (370), Expect = 1.200e-37
Identity = 88/210 (41.90%), Postives = 122/210 (58.10%), Query Frame = 1
Query:  868 ATITRQDIACAVRAVATFCGNLGPAHKKAVMKIL*YLLHTK*WGIAYG-GQGCRLCMEAYSDSGFGAWLDTRRSVSGAVLVLAKGAISWHSRMQEVTASGTSEAEYVALPEVVNEILPRRQEQECMEPSMRVDAVNAFEDNEGAIKLATNRHASRRTKYIDVKHHLMRDASGARKVRVAYVRSEDQHADLLTKPLDMQKFYKHAKFILNV 1494
            AT TR DIA AVRAVA +C +    H  A M IL Y   T  +GI++  G      ++ Y+D+ F +    RRSVSG ++    GA+SW SR Q+     T+EAEYVAL EVV  IL  RQ    M P + +  +  FEDN+GAI+LA N  ++  +K+IDV+HH +R+    +++ V +V S  Q AD LTK L    F  H  F++N+
Sbjct:    6 ATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGEVVKVILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSLSKDAFESHRDFVMNL 215          
BLAST of mRNA_F-distichus_contig9845.19282.1 vs. uniprot
Match: A0A6A4CLK4_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=10 Tax=Phytophthora TaxID=4783 RepID=A0A6A4CLK4_9STRA)

HSP 1 Score: 153 bits (387), Expect = 2.960e-37
Identity = 139/517 (26.89%), Postives = 237/517 (45.84%), Query Frame = 1
Query:    1 EWRKAEETEMLGLVENYVYKQVARPKDKLVVGTKMLYT*KIGQDGKVEKYKCRLVAQGF*LVEGVHYTEKYSPTP-ATASIRMLLAMAVAKDRELRHFDAEQACLKANIDEKIYIEIPRGVPGVSGGSRTTEEGHLRTRTGGEVLDQQVL*RHYGDWIRAGKCGS-VCVTQRR*RRGGDGGGGTRKRHSC--------ARQRPSDKG*IRD*AWTEAHIEGHGRRRVLHGLSHHKEQQGAQVEARPTLVHGVDGKNI*RQEGN*-DTGCVRGANALKGGRTTEPGGGGNEEA----PVPGGSGG----ATITRQDIACAVRAVATFCGNLGPAHKKAVMKIL*YLLHTK*WGIAYGGQGCRLCMEAYSDSGFGAWLDTRRSVSGAVLVLAKGAISWHSRMQEVTASGTSEAEYVALPEVVNEILPRRQEQECMEPSMRVDAVNAFEDNEGAIKLATNRHASRRTKYIDVKHHLMRDASGARKVRVAYVRSEDQHADLLTKPLDMQKFYKHAKFILNV 1494
            +WR+A + E+L    N  +  V R      +G + ++  K  Q G+V +YK RLVA+GF    G+ + E YSP     +++R++L++  A +  +   DA+ A L + + +++Y+E+P G+    G      +     +      ++ +     G+  ++  CG+  CV  +R + G          + C        A +   +   ++D       ++  G  + + G+    +     ++ +PT       ++  ++     D  C  G   LK  +T  PG    + A    P     G      T TR DIA  V  ++ F  N    H  A +++L YL  T   GI Y G    + ++AYSD+ +G  LD RRS SG +++     + + S+ Q   A  ++EAEY+AL   V E+L  R     M    R +A   +EDN+GAI L  N     RTK++D++HH   +      V+V YV +++Q AD+LTK L      K  KF+ +V
Sbjct:    8 QWREAMDAELLSHERNGTWTLVPRGTASRTIGCRWVFAKKRDQYGRVVRYKARLVAKGFKQKYGIDFFETYSPVANMNSTLRVVLSVCAAYEYRMEQLDADTAFLNSELKDRVYMEVPFGIENARGYQYQLNKAIYGLKQAASAWNKTIHRVFLGNGFKS--CGADQCVYVKRSKNGFI--------YVCLYVDDMIIAAKTSEEIRDVKDALKNAFKMKELGPAKFILGMEIDHDMTAGTLKIKPTRYIDDVVEHFGQENAKPVDNPCAAG---LKLSKTQSPGTDAEQNAMRSKPYRSLIGCLLYITTCTRPDIAFVVTQLSRFLENPEKQHWNAAVRVLRYLKSTLQHGIIYHGGTHTVTLKAYSDADWGTSLDDRRSGSGVMVMTGNAPVVFKSKFQRTVALSSAEAEYMALSLCVQEVLWTRAMLTVMGTLQR-NATTIWEDNQGAIALVHNAGYHARTKHVDIRHHFTTENVERGTVKVEYVDTKNQLADILTKALGT----KTLKFLRDV 506          
BLAST of mRNA_F-distichus_contig9845.19282.1 vs. uniprot
Match: H3H572_PHYRM (Uncharacterized protein n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H572_PHYRM)

HSP 1 Score: 156 bits (394), Expect = 6.040e-37
Identity = 137/505 (27.13%), Postives = 235/505 (46.53%), Query Frame = 1
Query:    4 WRKAEETEMLGLVENYVYKQVARPKDKLVVGTKMLYT*KIGQDGKVEKYKCRLVAQGF*LVEGVHYTEKYSPTPATASIRMLLAMAVAKDRELRHFDAEQACLKANIDEKIYIEIPRGVPGVSGGSRTTEEGHLRTRTGGEVLDQQVL*RHYGDWIRAG--KCGS-VCVTQRR*RRGGDGGGGTRKRHS----------CARQRPSDKG*IRD*AWTEAHIEGHGRRRVLHGLSHHKEQQGAQVEARPTLVHGVDGKNI*RQEGN*DTG-CVRGANALK-GGRTTEPGGGGNEEAPVPGGSGG----ATITRQDIACAVRAVATFCGNLGPAHKKAVMKIL*YLLHTK*WGIAYGGQGCRLCMEAYSDSGFGAWLDTRRSVSGAVLVLAKGAISWHSRMQEVTASGTSEAEYVALPEVVNEILPRRQEQECMEPSMRVDAVNAFEDNEGAIKLATNRHASRRTKYIDVKHHLMRDASGARKVRVAYVRSEDQHADLLTKPLDMQK 1461
            W KA  +E+    +N  +  V R      +G + ++  K  + G+V +YK RLVA+GF    GV + E YSP     SIR++L++ VAK       DA+ A L +++ E++++E+P G+          ++     +       Q +    +  +++ G   CG+  CV  +          GT+  +            A +   +   ++    +   ++  G  + + G+    ++  + +  + T           +Q+       C  G    K    TT          P     G      T TR D+A  V  ++ F  N G  H KA +++L YL  TK +GI Y G   ++ MEAY+D+ +G+ LD RRSVSG ++++    + + S+ Q   A  ++EAEY+AL     E+L  R   + +    +V A   +EDN+GAI LA+N   + RTK++D++HH +R+      + V YV +EDQ AD+LTK L  ++
Sbjct:  852 WIKAMNSELKAHADNGSWTLVRRTSGARPIGCRWVFAKKRNEHGRVVRYKARLVAKGFKQKFGVDFFETYSPVANMNSIRVVLSVVVAKAYVTEQLDADTAFLNSDLKEQVFMEVPYGILNAEHMMCKLDKAIYGLKQAASAWHQTI----HAVFMKIGFHSCGADQCVYVK----------GTKDNYVYVCLYVDDMIIAAKTNKEIDEVKMALKSAFKMKELGEVKFILGMEIDHDRTASTLMIKQTRYIDDVTSRFNQQDAKAVVNPCESGMKLTKMQSPTTNAEREDMRNKPYRSLIGCLLYITTCTRPDVAYIVTQLSRFLENPGQQHWKAAIRVLRYLKTTKEFGIVYNGNNGKVAMEAYTDADWGSNLDDRRSVSGIMIMVGGAPVIFKSKYQRTVALSSAEAEYMALSLCTQEVLWTRTMLKDLGHE-QVGATQVWEDNQGAIALASNAGYNARTKHVDIRHHFIRENVARDIILVGYVGTEDQLADMLTKALGTKR 1341          
BLAST of mRNA_F-distichus_contig9845.19282.1 vs. uniprot
Match: A0A2N9FUY1_FAGSY (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9FUY1_FAGSY)

HSP 1 Score: 152 bits (384), Expect = 1.350e-36
Identity = 142/502 (28.29%), Postives = 221/502 (44.02%), Query Frame = 1
Query:    1 EWRKAEETEMLGLVENYVYKQVARPKDKLVVGTKMLYT*KIGQDGKVEKYKCRLVAQGF*LVEGVHYTEKYSPTPATASIRMLLAMAVAKDRELRHFDAEQACLKANIDEKIYIEIPRGVPGVSGGSRTTEEGHLR--TRTGGEVLDQQVL*RHYGDWIRAGKCGSVCVTQRR*RRGGDGGGGTRKRHSCARQRPSDKG*IRD*AWTEAHIEGHGRRRVLHGLSHHKEQQGAQVEARPTLVHGVDGKNI*RQEGN*DTGCVRGANALKGGRTTEPGGGGNEEAPVPGGSGGATI------TRQDIACAVRAVATFCGNLGPAHKKAVMKIL*YLLHTK*WGIAYGGQGCRLCMEAYSDSGFGAWLDTRRSVSGAVLVLAKGAISWHSRMQEVTASGTSEAEYVALPEVVNE-ILPRRQEQECMEPSMRVDAVNAFEDNEGAIKLATNRHASRRTKYIDVKHHLMRDASGARKVRVAYVRSEDQHADLLTKPLDMQKFYKHAK 1479
            EW  A + EM  + +N V++ V  P     +G K +   K   DG +++YK RLVA+G+   EG+ Y + +SP    ASIR++L++   +D EL   D + A L   +DE+IY+  P G        +  EE H     R+   +L   +L  +  D +  G      VT               K+   +     D G        +   +   R + L  LS     QG  ++      H  + K I   +   + GC    +        +     N+ + VP  S   ++      TR DI  AV  V+ +  N GPAH +AV +IL YL  T    + Y G   RL    YSD+ + +  D R+S SG   +L  GA+SW S+ Q   A  T E+EYVA    V E +  RR  Q     +   DAV  + D+  A+  A +     + K+I++++H +RD     +V + ++ +    AD LTKP+    F+ H K
Sbjct:   86 EWMTAMQEEMSSMDKNNVWELVDLPPGHKTIGNKWVLKVKRKADGSIDRYKARLVAKGYTQREGIDYEDTFSPVVRFASIRLILSIVAKQDLELFQMDVKTAFLNGELDEEIYMAQPAGFEAKGHERKMIEEDHCMYLKRSKRSIL---ILSLYVDDILLVGNDMDSIVTT--------------KKWLSSTFEMKDMGEANFVLGVKITRD---RSKKLLSLS-----QGTYIKKILERFHMHNSKPI---DTPMEKGCTLSLDQCPKNDEEK-----NQMSKVPYASAIRSLMYAMLCTRPDICFAVGMVSRYQSNPGPAHWRAVKRILRYLRGTSDHALCYHGGDLRL--TGYSDADWASDKDERKSTSGYAFILGGGAVSWCSKKQSCIALSTMESEYVACSAAVQEAVWLRRFLQRLGVTAHAEDAVLLYSDSTSALAYAKDPKYHGKAKHIELRYHYIRDMVSQGEVILQHISTGSMVADPLTKPIARDLFFSHTK 552          
BLAST of mRNA_F-distichus_contig9845.19282.1 vs. uniprot
Match: A0A2N9GH76_FAGSY (Integrase catalytic domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GH76_FAGSY)

HSP 1 Score: 154 bits (390), Expect = 1.820e-36
Identity = 140/512 (27.34%), Postives = 222/512 (43.36%), Query Frame = 1
Query:    1 EWRKAEETEMLGLVENYVYKQVARPKDKLVVGTKMLYT*KIGQDGKVEKYKCRLVAQGF*LVEGVHYTEKYSPTPATASIRMLLAMAVAKDRELRHFDAEQACLKANIDEKIYIEIPRGVPGVSGGSRTTEEGHL--RTRTGGEVLDQQVL*RHYGDWIRAGKCGSVCVTQRR*RRGGDGGGGTRKRHSCARQRPSDKG*IRD*AWTEAHIE--GHGRRRVLHGLSHHKE--------QQGAQVEARPTLVHGVDGKNI*RQEGN*DTGCVRGANALKGGRTTEPGGGGNEEAPVPGGSGGATI------TRQDIACAVRAVATFCGNLGPAHKKAVMKIL*YLLHTK*WGIAYGGQGCRLCMEAYSDSGFGAWLDTRRSVSGAVLVLAKGAISWHSRMQEVTASGTSEAEYVALPEVVNE-ILPRRQEQECMEPSMRVDAVNAFEDNEGAIKLATNRHASRRTKYIDVKHHLMRDASGARKVRVAYVRSEDQHADLLTKPLDMQKFYKHAK 1479
            EW  A + EM  + +N V++ V  P  +  +G K +   K   DG +++YK RLVA+G+   EG+ Y + +SP    ASIR++L++   +D EL   D + A L   +DE+IY+  P G        +  EE H     R+   +L   +L  +  D + AG      VT ++                                W  +  E    G    + G+   ++         QG  ++      H  + K I   +   + GC    +        +     N+ + VP  S   ++      TR DI  AV  V+ +  N GPAH +AV +IL YL  T    + Y G   RL    YSD+ + +  D R+S SG   +L  GA+SW S+ Q   A  T E+EYVA    V E +  RR  Q     +   DAV  + D+  A+  A +     + K+I++++H ++D     KV + ++ +    AD LTKP+    F+ H K
Sbjct:  661 EWMTAMQEEMSSMDKNNVWELVDLPPGRKTIGNKWVLKVKRKADGSIDRYKARLVAKGYTQREGIDYEDTFSPVVRFASIRLILSIVAKQDLELFQMDVKTAFLNGELDEEIYMAQPAGFEAKGHERKMIEEDHCVYLKRSKRSIL---ILSLYVDDILLAGNDMDSIVTTKK--------------------------------WLSSTFEMKDMGEANFVLGVKITRDCSKKLLSLSQGTYIKKILERFHMHNSKPI---DTPMEKGCTLSLDQCPKNDEEK-----NQMSKVPYASAIGSLMYAMLCTRPDICFAVGMVSRYQSNPGPAHWRAVKRILRYLRGTSDHALCYHGGDLRL--TGYSDADWASDKDERKSTSGYAFILGGGAVSWCSKKQSCIALSTMESEYVACSAAVQEAVWLRRFLQRLGVTAHAEDAVLLYSDSTSALAYAKDPKYHGKAKHIELRYHYIQDMVSQGKVILQHISTSSMVADPLTKPIARDLFFSHTK 1127          
BLAST of mRNA_F-distichus_contig9845.19282.1 vs. uniprot
Match: A0A2N9HQ47_FAGSY (Integrase catalytic domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9HQ47_FAGSY)

HSP 1 Score: 154 bits (389), Expect = 2.370e-36
Identity = 143/502 (28.49%), Postives = 223/502 (44.42%), Query Frame = 1
Query:    1 EWRKAEETEMLGLVENYVYKQVARPKDKLVVGTKMLYT*KIGQDGKVEKYKCRLVAQGF*LVEGVHYTEKYSPTPATASIRMLLAMAVAKDRELRHFDAEQACLKANIDEKIYIEIPRGVPGVSGGSRTTEEGHL--RTRTGGEVLDQQVL*RHYGDWIRAGKCGSVCVTQRR*RRGGDGGGGTRKRHSCARQRPSDKG*IRD*AWTEAHIEGHGRRRVLHGLSHHKEQQGAQVEARPTLVHGVDGKNI*RQEGN*DTGCVRGANALKGGRTTEPGGGGNEEAPVPGGSGGATI------TRQDIACAVRAVATFCGNLGPAHKKAVMKIL*YLLHTK*WGIAYGGQGCRLCMEAYSDSGFGAWLDTRRSVSGAVLVLAKGAISWHSRMQEVTASGTSEAEYVALPEVVNE-ILPRRQEQECMEPSMRVDAVNAFEDNEGAIKLATNRHASRRTKYIDVKHHLMRDASGARKVRVAYVRSEDQHADLLTKPLDMQKFYKHAK 1479
            EW  A + EM  + +N V++ V  P  +  +G K +   K   DG +++YK RLVA+G+   EG+ Y + +SP    ASIR++L++   +D EL   D + A L   +DE+IY+  P G        +  EE H     R+   +L   +L  +  D + AG      VT               K+   +     D G        +   +   R + L  LS     QG  ++      H  + K I   +   + GC    +        +     N+ + VP  S   ++      TR DI  AV  V+ +  N GPAH +AV +IL YL  T    + Y G   RL    YSD+ + +  D R+S SG   +L  GA+SW S+ Q   A  T E+EYVA    V E +  RR  Q     +   DAV  + D+  A+  A +     + K+I++++H +RD     +V + ++ +    AD LTKP+    F+ H K
Sbjct:  600 EWMTAMQEEMSSMDKNNVWELVDLPPGRKTIGNKWVLKVKRKADGSIDRYKARLVAKGYTQREGIDYEDTFSPVVRFASIRLILSIVAKQDLELFQMDVKTAFLNGELDEEIYMAQPEGFEVKGHERKMIEEDHCVYLKRSKRSIL---ILSLYVDDILLAGNDMDSIVTT--------------KKWLSSTFEMKDMGEANFVLGVKITRD---RSKKLLSLS-----QGTYIKKILERFHMHNSKPI---DTPMEKGCTLSLDQCPKNDEEK-----NQMSKVPYASAIGSLMYAMLCTRPDICFAVGMVSRYQSNPGPAHWRAVKRILRYLRGTSDHALCYHGGDLRL--TGYSDADWASDKDERKSTSGYAFILGGGAVSWCSKKQSCIALSTMESEYVACSAAVQEAVWLRRFLQRLGVTAHAEDAVLLYSDSTSALAYAKDPKYHGKAKHIELRYHYIRDMVSQGEVILQHISTGSMVADPLTKPIARDLFFSHTK 1066          
BLAST of mRNA_F-distichus_contig9845.19282.1 vs. uniprot
Match: A0A6A3JPU3_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3JPU3_9STRA)

HSP 1 Score: 152 bits (384), Expect = 6.790e-36
Identity = 135/505 (26.73%), Postives = 228/505 (45.15%), Query Frame = 1
Query:    1 EWRKAEETEMLGLVENYVYKQVARPKDKLVVGTKMLYT*KIGQDGKVEKYKCRLVAQGF*LVEGVHYTEKYSPTPATASIRMLLAMAVAKDRELRHFDAEQACLKANIDEKIYIEIPRGVPGVSGGSRTTEEGHLRTRTGGEVLDQQVL*RHYGDWIRAGKCGS-VCVTQRR*RRGGDGGGGTRKRHSC--------ARQRPSDKG*IRD*AWTEAHIEGHGRRRVLHGLSHHKEQQGAQVEARPT-----LVHGVDGKNI*RQE--------GN*DTGCVRGANALKGGRTTEPGGGGNEEAPVPGGSGGATITRQDIACAVRAVATFCGNLGPAHKKAVMKIL*YLLHTK*WGIAYGGQGCRLCMEAYSDSGFGAWLDTRRSVSGAVLVLAKGAISWHSRMQEVTASGTSEAEYVALPEVVNEILPRRQEQECMEPSMRVDAVNAFEDNEGAIKLATNRHASRRTKYIDVKHHLMRDASGARKVRVAYVRSEDQHADLLTKPL 1449
            +WR+A + E+L    N  +  V R      +G + ++  K  Q G+V +YK RLVA+GF    G+ + E YSP     SIR+++++  A +  +   DA+ A L + + +++Y+E+P G+           +     +      ++ +     G+  ++  CG+  CV  +R + G          + C        A +   D   ++D       ++  G  + + G+    +     ++ + T     L      ++  RQE        G    GC+                               T TR DIA  V  ++ F  N G  H  A +++L YL  T+  GI Y G    + ++AYSD+ +G  LD RRSVSG ++++    + + S+ Q   A  ++EAEY+AL   V E+L  R     M    R +A   +EDN+GAI LA N     RTK++D++HH +R+      V+V YV +++Q AD+LTK L
Sbjct:  294 QWREAMDAELLSHERNGTWTLVPRGTANRTIG-RWVFAKKRDQYGRVVRYKARLVAKGFKQKYGIDFFETYSPVANMNSIRVVVSVCAAYEYRMEQLDADTAFLNSELKDRVYMEVPFGIENARDYQCQLNKAIYGLKQAASAWNKTIHRVFLGNGFKS--CGADQCVYVKRSKNGFI--------YVCLYVDDMIIAAKTSEDIREVKDALKNALKMKELGPAKFIVGMEIDHDMTAGTLKIKQTRYIDDLASSCRRRS--RQERMQSRTQCGRNLIGCLLYIT---------------------------TCTRPDIAFVVTQLSRFLENPGQQHWNAAVRVLRYLKSTRQHGIIYQGGTHSVTLKAYSDADWGTNLDDRRSVSGVMVMIGNAPVVFKSKFQRTVALSSAEAEYMALSLCVQEVLWTRAMLTDMGTLQR-NATTIWEDNQGAIALAQNAGYHARTKHVDIRHHFIRENVKRGTVKVEYVDTKNQLADILTKAL 757          
BLAST of mRNA_F-distichus_contig9845.19282.1 vs. uniprot
Match: A0A2N9IFW4_FAGSY (CCHC-type domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9IFW4_FAGSY)

HSP 1 Score: 152 bits (384), Expect = 1.000e-35
Identity = 153/503 (30.42%), Postives = 220/503 (43.74%), Query Frame = 1
Query:    4 WRKAEETEMLGLVENYVYKQVARPKDKLVVGTKMLYT*KIGQDGKVEKYKCRLVAQGF*LVEGVHYTEKYSPTPATASIRMLLAMAVAKDRELRHFDAEQACLKANIDEKIYIEIPRGVPGVSGGSRTTEEGHLRTRTGGEVLDQQVL*RHYGDWIRAGKCGSVCVTQRR*RRGGDGGGGTRKRHSCARQRPSDKG*IRD*AWTEAHIEG----HGRRRVLHGLSHHKEQQGAQVEARPTLVHGVDGKNI*RQEGN*DTGCVRGANALKGGRTTEPGGGGNEE---APVPGGSGGATI----TRQDIACAVRAVATFCGNLGPAHKKAVMKIL*YLLHTK*WGIAYGGQGCRLCMEAYSDSGFGAWLDTRRSVSGAVLVLAKGAISWHSRMQEVTASGTSEAEYVALPEVVNE-ILPRRQEQEC-MEPSMRVDAVNAFEDNEGAIKLATNRHASRRTKYIDVKHHLMRDASGARKVRVAYVRSEDQHADLLTKPLDMQKFYKH 1473
            W+KA E+EM  +  N V+  V +P+    +G K +Y  K+G  GKVE YK RLVA+G+    G+ Y E +SP     SIR+LL++A   D E+   D + A L  NI E+IY++ P G              H+                    W R  +  S                   K    +     D G         ++I G      R++ L GLS  +     ++ AR ++     G +  R       G     N     +T E      E+    P     G        TR DI  AV  V+ +  N GP H  AV  IL YL  TK + + +G +   L ++ Y+DS F + +D R+S+SG V  L KGAISW S  Q+ TA  T+EAEY+A  E   E +  R+  QE  + PS+    +    DN GAI  A    A +RTK+I+ + HL+ D      V + ++ S +  AD  TK L  + F KH
Sbjct:  563 WKKAMESEMDSMYTNQVWTLVDKPEGIKPIGCKWIYKRKLGPTGKVETYKARLVAKGYTQKVGIDYEETFSPVAMLKSIRILLSIAAHYDYEIWQMDVKTAFLNGNIREEIYMDQPVGF-------------HI-------------------SWARIKRAMSSI-----------------KMWLSSHFAMKDLG-------EASYILGIKLFRDRKKRLLGLS--QVNYIDKILARFSMQDSKKGFSPFRH------GVHLSKNMCP--KTQEE----REKMRNCPYASAVGSLMYAMLCTRPDICYAVSIVSRYQSNPGPEHWTAVKHILKYLNRTKHYFLVFGSKD--LNIQGYTDSNFQSDIDDRKSISGFVFTLGKGAISWRSCKQDTTADSTTEAEYIAASEAAKEAVWIRKFIQELGVVPSIE-SPIKIHCDNNGAIANAVEPRAHKRTKHIERRFHLIHDIIHRGDVEITHIASANNVADPFTKALPQKVFEKH 992          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig9845.19282.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JRL9_9PHAE2.040e-3929.89Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5KKK1_9PHAE3.060e-3929.89Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5KEZ8_9PHAE1.200e-3741.90Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
A0A6A4CLK4_9STRA2.960e-3726.89Retrovirus-related Pol polyprotein from transposon... [more]
H3H572_PHYRM6.040e-3727.13Uncharacterized protein n=2 Tax=Phytophthora ramor... [more]
A0A2N9FUY1_FAGSY1.350e-3628.29Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2N9GH76_FAGSY1.820e-3627.34Integrase catalytic domain-containing protein n=1 ... [more]
A0A2N9HQ47_FAGSY2.370e-3628.49Integrase catalytic domain-containing protein n=1 ... [more]
A0A6A3JPU3_9STRA6.790e-3626.73Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2N9IFW4_FAGSY1.000e-3530.42CCHC-type domain-containing protein n=1 Tax=Fagus ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig9845contigF-distichus_contig9845:8485..9984 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score99.8
Seed ortholog evalue1.2e-18
Seed eggNOG ortholog164328.Phyra85763
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QGIS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size1500
Cds size468
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931164.269135-CDS-F-distichus_contig9845:8484..89521622931164.269135-CDS-F-distichus_contig9845:8484..8952Fucus distichus monoicousCDSF-distichus_contig9845 8485..8952 -
1690886186.2690887-CDS-F-distichus_contig9845:8484..89521690886186.2690887-CDS-F-distichus_contig9845:8484..8952Fucus distichus monoicousCDSF-distichus_contig9845 8485..8952 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931164.286442-UTR-F-distichus_contig9845:8952..99841622931164.286442-UTR-F-distichus_contig9845:8952..9984Fucus distichus monoicousUTRF-distichus_contig9845 8953..9984 -
1690886186.279542-UTR-F-distichus_contig9845:8952..99841690886186.279542-UTR-F-distichus_contig9845:8952..9984Fucus distichus monoicousUTRF-distichus_contig9845 8953..9984 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig9845.19282.1prot_F-distichus_contig9845.19282.1Fucus distichus monoicouspolypeptideF-distichus_contig9845 8485..8952 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig9845.19282.1

>prot_F-distichus_contig9845.19282.1 ID=prot_F-distichus_contig9845.19282.1|Name=mRNA_F-distichus_contig9845.19282.1|organism=Fucus distichus monoicous|type=polypeptide|length=156bp
MEAYSDSGFGAWLDTRRSVSGAVLVLAKGAISWHSRMQEVTASGTSEAEY
VALPEVVNEILPRRQEQECMEPSMRVDAVNAFEDNEGAIKLATNRHASRR
TKYIDVKHHLMRDASGARKVRVAYVRSEDQHADLLTKPLDMQKFYKHAKF
ILNVV*
back to top

mRNA from alignment at F-distichus_contig9845:8485..9984-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig9845.19282.1 ID=mRNA_F-distichus_contig9845.19282.1|Name=mRNA_F-distichus_contig9845.19282.1|organism=Fucus distichus monoicous|type=mRNA|length=1500bp|location=Sequence derived from alignment at F-distichus_contig9845:8485..9984- (Fucus distichus monoicous)
GAATGGCGGAAGGCAGAGGAGACAGAGATGCTTGGATTGGTCGAGAACTA CGTTTATAAGCAAGTGGCTCGGCCAAAGGATAAGCTCGTGGTTGGCACAA AAATGCTCTACACGTGAAAAATCGGACAGGACGGCAAGGTCGAGAAGTAC AAGTGCCGACTTGTCGCTCAAGGGTTCTAGCTGGTGGAAGGTGTACACTA CACGGAAAAGTACTCGCCCACGCCAGCGACCGCGTCAATCCGGATGCTGT TGGCGATGGCAGTGGCCAAGGACAGAGAGCTGCGCCATTTTGACGCGGAG CAGGCATGTTTGAAGGCGAATATTGACGAAAAAATATACATTGAGATCCC CCGAGGAGTTCCAGGAGTTTCCGGGGGCAGTAGGACGACTGAAGAAGGCC ATTTACGGACTCGTACAGGCGGGGAGGTGCTGGATCAACAAGTTTTGTGA CGACATTACGGCGATTGGATTCGAGCAGGCAAATGCGGATCCGTGTGTGT TACACAACGTCGTTGACGGCGAGGCGGAGATGGTGGTGGTGGTACACGTA AACGACATTCTTGCGCACGCCAAAGACCAAGCGACAAAGGCTAGATTCGA GACTGAGCTTGGACAGAAGCTCATATTGAAGGACATGGGCGGCGCCGGGT ACTACATGGGCTGTCACATCACAAAGAACAGCAAGGCGCGCAAGTTGAAG CTCGACCAACACTTGTACATGGAGTCGATGGTAAAAATATTTGACGTCAA GAAGGCAACTAAGATACCGGCTGCGTCAGAGGTGCCAACGCTCTCAAAGG TGGACGAACCACGGAACCCGGTGGAGGAGGAAATGAGGAAGCTCCCGTAC CGGGAGGCAGTGGGGGCGCGACGATAACACGGCAGGACATTGCGTGCGCC GTACGCGCTGTGGCCACGTTCTGTGGAAACCTTGGGCCGGCGCATAAGAA GGCAGTGATGAAGATCTTGTAGTATCTCCTTCACACGAAGTAATGGGGGA TTGCGTACGGTGGACAGGGCTGTAGACTCTGCATGGAAGCATACTCGGAC TCGGGTTTCGGAGCCTGGCTGGATACGAGACGATCGGTTTCGGGTGCGGT GTTGGTGCTGGCGAAGGGGGCGATCAGCTGGCATTCAAGGATGCAAGAAG TGACAGCATCGGGTACCTCGGAGGCAGAGTACGTTGCTTTACCAGAGGTG GTAAATGAAATTCTACCTCGCAGACAGGAGCAGGAGTGCATGGAACCGTC AATGAGGGTCGATGCAGTGAATGCGTTCGAAGACAATGAGGGGGCCATCA AGCTGGCCACAAACAGGCATGCTAGTCGTAGGACGAAGTACATTGATGTG AAACACCATCTGATGAGGGACGCGTCTGGCGCACGAAAGGTTAGAGTAGC GTATGTGAGGTCCGAAGATCAGCACGCGGACTTGCTCACCAAGCCGCTAG ACATGCAAAAGTTTTACAAGCACGCGAAGTTTATCCTAAATGTAGTGTGA
back to top

Coding sequence (CDS) from alignment at F-distichus_contig9845:8485..9984-

>mRNA_F-distichus_contig9845.19282.1 ID=mRNA_F-distichus_contig9845.19282.1|Name=mRNA_F-distichus_contig9845.19282.1|organism=Fucus distichus monoicous|type=CDS|length=936bp|location=Sequence derived from alignment at F-distichus_contig9845:8485..9984- (Fucus distichus monoicous)
ATGGAAGCATACTCGGACTCGGGTTTCGGAGCCTGGCTGGATACGAGACG
ATCGGTTTCGGGTGCGGTGTTGGTGCTGGCGAAGGGGGCGATCAGCTGGC
ATTCAAGGATGCAAGAAGTGACAGCATCGGGTACCTCGGAGGCAGAGTAC
GTTGCTTTACCAGAGGTGGTAAATGAAATTCTACCTCGCAGACAGGAGCA
GGAGTGCATGGAACCGTCAATGAGGGTCGATGCAGTGAATGCGTTCGAAG
ACAATGAGGGGGCCATCAAGCTGGCCACAAACAGGCATGCTAGTCGTAGG
ACGAAGTACATTGATGTGAAACACCATCTGATGAGGGACGCGTCTGGCGC
ACGAAAGGTTAGAGTAGCGTATGTGAGGTCCGAAGATCAGCACGCGGACT
TGCTCACCAAGCCGCTAGACATGCAAAAGTTTTACAAGCACGCGAAGTTT
ATCCTAAATGTAGTGTGAATGGAAGCATACTCGGACTCGGGTTTCGGAGC
CTGGCTGGATACGAGACGATCGGTTTCGGGTGCGGTGTTGGTGCTGGCGA
AGGGGGCGATCAGCTGGCATTCAAGGATGCAAGAAGTGACAGCATCGGGT
ACCTCGGAGGCAGAGTACGTTGCTTTACCAGAGGTGGTAAATGAAATTCT
ACCTCGCAGACAGGAGCAGGAGTGCATGGAACCGTCAATGAGGGTCGATG
CAGTGAATGCGTTCGAAGACAATGAGGGGGCCATCAAGCTGGCCACAAAC
AGGCATGCTAGTCGTAGGACGAAGTACATTGATGTGAAACACCATCTGAT
GAGGGACGCGTCTGGCGCACGAAAGGTTAGAGTAGCGTATGTGAGGTCCG
AAGATCAGCACGCGGACTTGCTCACCAAGCCGCTAGACATGCAAAAGTTT
TACAAGCACGCGAAGTTTATCCTAAATGTAGTGTGA
back to top