mRNA_F-distichus_contig97318.19185.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig97318.19185.1
Unique NamemRNA_F-distichus_contig97318.19185.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig97318.19185.1 vs. uniprot
Match: A0A7S2H0X4_9STRA (E3 ubiquitin-protein ligase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H0X4_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 1.140e-17
Identity = 37/64 (57.81%), Postives = 49/64 (76.56%), Query Frame = 1 
Query:    1 IDLVRLPHAYTELHAEVTSRARGRISHPAVCLVCGELLDAHGAGKCTEHAGLCGAGVGVVFLLQ 192
            +D+V LPHAYTELH+++TS+      HPAVCL+CG +L   G G+CT+HA +CG GVG+ FLLQ
Sbjct:  166 VDMVDLPHAYTELHSDLTSQTSSE--HPAVCLMCGAVLCGDGKGECTKHAKICGLGVGIFFLLQ 227
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BLAST of mRNA_F-distichus_contig97318.19185.1 vs. uniprot
Match: A0A6H5JZR4_9PHAE (E3 ubiquitin-protein ligase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZR4_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 1.240e-16
Identity = 44/91 (48.35%), Postives = 49/91 (53.85%), Query Frame = 1 
Query:    1 IDLVRLPHAYTELHAEVTSRARGRI---------------------------SHPAVCLVCGELLDAHGAGKCTEHAGLCGAGVGVVFLLQ 192
            IDLVRLPHAYTELHA+V+S                                  HPAVCLVCGE+LDA G G+CT HA  CG G G+ FLLQ
Sbjct:  178 IDLVRLPHAYTELHAQVSSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGHPAVCLVCGEVLDASGRGECTRHAAECGCGTGLFFLLQ 268
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BLAST of mRNA_F-distichus_contig97318.19185.1 vs. uniprot
Match: B8C4U6_THAPS (E3 ubiquitin-protein ligase n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C4U6_THAPS)

HSP 1 Score: 66.2 bits (160), Expect = 4.420e-11
Identity = 31/59 (52.54%), Postives = 41/59 (69.49%), Query Frame = 1 
Query:   16 LPHAYTELHAEVTSRARGRISHPAVCLVCGELLDAHGAGKCTEHAGLCGAGVGVVFLLQ 192
            LP +YT+L+AE+ +         A+CLVCGE+LDA G G+CT+HA  CG G G+ FLLQ
Sbjct: 2841 LPKSYTDLYAELGAMCPDS-DQTAICLVCGEVLDASGKGECTKHAFKCGGGAGIFFLLQ 2898
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BLAST of mRNA_F-distichus_contig97318.19185.1 vs. uniprot
Match: A0A7S3DLX9_9STRA (E3 ubiquitin-protein ligase n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DLX9_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 2.870e-10
Identity = 31/59 (52.54%), Postives = 41/59 (69.49%), Query Frame = 1 
Query:   16 LPHAYTELHAEVTSRARGRISHPAVCLVCGELLDAHGAGKCTEHAGLCGAGVGVVFLLQ 192
            +P AYT+L+AE+ +         AVCLVCGE+L+A G G+CT H+  CGAG G+ FLLQ
Sbjct: 1560 MPVAYTDLYAELGA-LMPECEQTAVCLVCGEVLNAGGKGECTRHSFKCGAGAGIFFLLQ 1617
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BLAST of mRNA_F-distichus_contig97318.19185.1 vs. uniprot
Match: A0A7S2ML06_9STRA (E3 ubiquitin-protein ligase n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2ML06_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 3.100e-10
Identity = 31/59 (52.54%), Postives = 41/59 (69.49%), Query Frame = 1 
Query:   16 LPHAYTELHAEVTSRARGRISHPAVCLVCGELLDAHGAGKCTEHAGLCGAGVGVVFLLQ 192
            LP +YT+L+AE+ +         A+CLVCGE+L+A G G+CT HA  CGAG G+ FLLQ
Sbjct:  185 LPTSYTDLYAELGALCPDS-EQTALCLVCGEILNAGGKGECTNHAFECGAGAGIFFLLQ 242
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BLAST of mRNA_F-distichus_contig97318.19185.1 vs. uniprot
Match: A0A7S4S5A1_9STRA (E3 ubiquitin-protein ligase n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4S5A1_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 5.320e-10
Identity = 31/59 (52.54%), Postives = 41/59 (69.49%), Query Frame = 1 
Query:   16 LPHAYTELHAEVTSRARGRISHPAVCLVCGELLDAHGAGKCTEHAGLCGAGVGVVFLLQ 192
            LP +YT+L+AE+ +         A+CLVCGE+L+A G G+CT HA  CGAG G+ FLLQ
Sbjct:  929 LPTSYTDLYAELGALCPDS-EQTALCLVCGEVLNAGGKGECTNHAFECGAGAGIFFLLQ 986
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BLAST of mRNA_F-distichus_contig97318.19185.1 vs. uniprot
Match: A0A7S1Z354_9STRA (E3 ubiquitin-protein ligase n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1Z354_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 5.360e-10
Identity = 31/59 (52.54%), Postives = 41/59 (69.49%), Query Frame = 1 
Query:   16 LPHAYTELHAEVTSRARGRISHPAVCLVCGELLDAHGAGKCTEHAGLCGAGVGVVFLLQ 192
            LP +YT+L+AE+ +         A+CLVCGE+L+A G G+CT HA  CGAG G+ FLLQ
Sbjct: 1506 LPTSYTDLYAELGALCPDS-EQTALCLVCGEVLNAGGKGECTNHAFECGAGAGIFFLLQ 1563
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BLAST of mRNA_F-distichus_contig97318.19185.1 vs. uniprot
Match: A0A448Z6T2_9STRA (E3 ubiquitin-protein ligase n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z6T2_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 5.380e-10
Identity = 30/59 (50.85%), Postives = 42/59 (71.19%), Query Frame = 1 
Query:   16 LPHAYTELHAEVTSRARGRISHPAVCLVCGELLDAHGAGKCTEHAGLCGAGVGVVFLLQ 192
            +P +YT+L+AE+ S+        AVCLVCGE+++A G G+CT H+  CGAG G+ FLLQ
Sbjct: 2438 VPTSYTDLYAEL-SQLLPDSEQTAVCLVCGEVMNAGGRGECTRHSNQCGAGAGMFFLLQ 2495
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BLAST of mRNA_F-distichus_contig97318.19185.1 vs. uniprot
Match: A0A7S3KZJ0_9STRA (E3 ubiquitin-protein ligase n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3KZJ0_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 7.350e-10
Identity = 30/59 (50.85%), Postives = 40/59 (67.80%), Query Frame = 1 
Query:   16 LPHAYTELHAEVTSRARGRISHPAVCLVCGELLDAHGAGKCTEHAGLCGAGVGVVFLLQ 192
            +P +YT+L+AE+           AVCLVCGE+L+A G G+CT H+  CGAG G+ FLLQ
Sbjct: 2382 MPTSYTDLYAEL-GNLMPECEQTAVCLVCGEVLNAGGKGECTRHSYKCGAGAGMFFLLQ 2439
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BLAST of mRNA_F-distichus_contig97318.19185.1 vs. uniprot
Match: A0A7S2UM39_9STRA (E3 ubiquitin-protein ligase n=2 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UM39_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 1.880e-9
Identity = 31/66 (46.97%), Postives = 43/66 (65.15%), Query Frame = 1 
Query:    7 LVRLPHAYTELHAEVTSRARGRI----SHPAVCLVCGELLDAHGAGKCTEHAGLCGAGVGVVFLLQ 192
            +  LP +YT+L+A++     G I       A+CLVCGE+L+A G G+CT+HA  CG G G+ FLLQ
Sbjct: 2005 IAMLPTSYTDLYAQL-----GPIFPDSEQTALCLVCGEVLNAGGKGECTKHAAACGGGAGIFFLLQ 2065
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig97318.19185.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A7S2H0X4_9STRA1.140e-1757.81E3 ubiquitin-protein ligase n=1 Tax=Dictyocha spec... [more]
A0A6H5JZR4_9PHAE1.240e-1648.35E3 ubiquitin-protein ligase n=1 Tax=Ectocarpus sp.... [more]
B8C4U6_THAPS4.420e-1152.54E3 ubiquitin-protein ligase n=1 Tax=Thalassiosira ... [more]
A0A7S3DLX9_9STRA2.870e-1052.54E3 ubiquitin-protein ligase n=1 Tax=Amphiprora pal... [more]
A0A7S2ML06_9STRA3.100e-1052.54E3 ubiquitin-protein ligase n=1 Tax=Helicotheca ta... [more]
A0A7S4S5A1_9STRA5.320e-1052.54E3 ubiquitin-protein ligase n=1 Tax=Ditylum bright... [more]
A0A7S1Z354_9STRA5.360e-1052.54E3 ubiquitin-protein ligase n=1 Tax=Ditylum bright... [more]
A0A448Z6T2_9STRA5.380e-1050.85E3 ubiquitin-protein ligase n=1 Tax=Pseudo-nitzsch... [more]
A0A7S3KZJ0_9STRA7.350e-1050.85E3 ubiquitin-protein ligase n=1 Tax=Amphora coffei... [more]
A0A7S2UM39_9STRA1.880e-946.97E3 ubiquitin-protein ligase n=2 Tax=Attheya septen... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig97318contigF-distichus_contig97318:79..282 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.0
Seed ortholog evalue3.8e-09
Seed eggNOG ortholog35128.Thaps22947
KEGG koko:K10625,ko:K10626,ko:K11978
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000151,GO:0000280,GO:0001101,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006259,GO:0006310,GO:0006325,GO:0006342,GO:0006355,GO:0006464,GO:0006508,GO:0006511,GO:0006725,GO:0006807,GO:0006950,GO:0006952,GO:0006996,GO:0007049,GO:0007127,GO:0007131,GO:0007140,GO:0007141,GO:0007276,GO:0007283,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009605,GO:0009607,GO:0009620,GO:0009719,GO:0009725,GO:0009737,GO:0009889,GO:0009890,GO:0009892,GO:0009894,GO:0009966,GO:0009968,GO:0009987,GO:0010029,GO:0010033,GO:0010243,GO:0010468,GO:0010498,GO:0010528,GO:0010529,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0010646,GO:0010648,GO:0016043,GO:0016458,GO:0016567,GO:0016569,GO:0016570,GO:0016574,GO:0016597,GO:0016740,GO:0019216,GO:0019219,GO:0019222,GO:0019538,GO:0019787,GO:0019941,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0023051,GO:0023057,GO:0030163,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031406,GO:0032006,GO:0032007,GO:0032446,GO:0032501,GO:0032504,GO:0032991,GO:0033522,GO:0033993,GO:0034641,GO:0035825,GO:0036094,GO:0036211,GO:0040029,GO:0042221,GO:0043161,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043177,GO:0043200,GO:0043201,GO:0043207,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044464,GO:0044703,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0048232,GO:0048285,GO:0048519,GO:0048523,GO:0048580,GO:0048583,GO:0048585,GO:0048609,GO:0050789,GO:0050793,GO:0050794,GO:0050832,GO:0050896,GO:0050994,GO:0051171,GO:0051172,GO:0051239,GO:0051252,GO:0051253,GO:0051276,GO:0051321,GO:0051603,GO:0051704,GO:0051707,GO:0051716,GO:0060255,GO:0061630,GO:0061659,GO:0061982,GO:0065007,GO:0070647,GO:0070728,GO:0070887,GO:0071229,GO:0071230,GO:0071233,GO:0071310,GO:0071417,GO:0071495,GO:0071596,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097305,GO:0098542,GO:0140013,GO:0140096,GO:1900140,GO:1901360,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902494,GO:1902531,GO:1902532,GO:1902679,GO:1903046,GO:1903506,GO:1903507,GO:1990234,GO:2000026,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.Ring finger
EggNOG OGs2XE00@2836,KOG1139@1,KOG1139@2759,KOG1140@1,KOG1140@2759
EC2.3.2.27
COG Functional cat.O
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04121
Exons1
Model size204
Cds size204
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931153.1570933-CDS-F-distichus_contig97318:78..2821622931153.1570933-CDS-F-distichus_contig97318:78..282Fucus distichus monoicousCDSF-distichus_contig97318 79..282 +
1690886181.215849-CDS-F-distichus_contig97318:78..2821690886181.215849-CDS-F-distichus_contig97318:78..282Fucus distichus monoicousCDSF-distichus_contig97318 79..282 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig97318.19185.1prot_F-distichus_contig97318.19185.1Fucus distichus monoicouspolypeptideF-distichus_contig97318 79..282 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig97318.19185.1

>prot_F-distichus_contig97318.19185.1 ID=prot_F-distichus_contig97318.19185.1|Name=mRNA_F-distichus_contig97318.19185.1|organism=Fucus distichus monoicous|type=polypeptide|length=68bp
IDLVRLPHAYTELHAEVTSRARGRISHPAVCLVCGELLDAHGAGKCTEHA
GLCGAGVGVVFLLQVTD*
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mRNA from alignment at F-distichus_contig97318:79..282+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig97318.19185.1 ID=mRNA_F-distichus_contig97318.19185.1|Name=mRNA_F-distichus_contig97318.19185.1|organism=Fucus distichus monoicous|type=mRNA|length=204bp|location=Sequence derived from alignment at F-distichus_contig97318:79..282+ (Fucus distichus monoicous)
ATTGACCTCGTGCGCTTACCGCACGCCTACACGGAGCTGCACGCCGAGGT
AACCTCGAGGGCACGGGGCCGGATCTCTCACCCTGCGGTATGCCTGGTGT
GTGGGGAACTCCTGGACGCGCACGGCGCCGGCAAGTGCACGGAGCATGCG
GGCTTGTGTGGCGCTGGCGTCGGAGTGGTGTTCCTCTTGCAGGTAACTGA
CTAA
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Coding sequence (CDS) from alignment at F-distichus_contig97318:79..282+

>mRNA_F-distichus_contig97318.19185.1 ID=mRNA_F-distichus_contig97318.19185.1|Name=mRNA_F-distichus_contig97318.19185.1|organism=Fucus distichus monoicous|type=CDS|length=408bp|location=Sequence derived from alignment at F-distichus_contig97318:79..282+ (Fucus distichus monoicous)
ATTGACCTCGTGCGCTTACCGCACGCCTACACGGAGCTGCACGCCGAGGT
AACCTCGAGGGCACGGGGCCGGATCTCTCACCCTGCGGTATGCCTGGTGT
GTGGGGAACTCCTGGACGCGCACGGCGCCGGCAAGTGCACGGAGCATGCG
GGCTTGTGTGGCGCTGGCGTCGGAGTGGTGTTCCTCTTGCAGGTAACTGA
CTAAATTGACCTCGTGCGCTTACCGCACGCCTACACGGAGCTGCACGCCG
AGGTAACCTCGAGGGCACGGGGCCGGATCTCTCACCCTGCGGTATGCCTG
GTGTGTGGGGAACTCCTGGACGCGCACGGCGCCGGCAAGTGCACGGAGCA
TGCGGGCTTGTGTGGCGCTGGCGTCGGAGTGGTGTTCCTCTTGCAGGTAA
CTGACTAA
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