mRNA_F-distichus_contig9697.19148.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig9697.19148.1
Unique NamemRNA_F-distichus_contig9697.19148.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
BLAST of mRNA_F-distichus_contig9697.19148.1 vs. uniprot
Match: A0A6H5KMS3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KMS3_9PHAE)

HSP 1 Score: 283 bits (725), Expect = 1.860e-87
Identity = 143/168 (85.12%), Postives = 154/168 (91.67%), Query Frame = 2
Query:   11 QEMGQASLASLLERTFVMAAAGNSYQEGLRAFITVCKEAYERGYTVPALTMEVSFVPTKTAGRDLHADEVELRSIWIALVYLTLENAHWPQKVPRAHDIPAPFMDRFAEFVQKVMNAAAKGHTLQTLKLEEVMRRGMEPRTPMEQAVLSQSMRIVFATLDLMKEGWAG 514
            +E  Q SLASL+E TFV+AAAGNSY+ GL+AFI+  KEAYERGYTVPALTMEVSFVPTKTAGRDLH DEVELRS+WIALVYLTLENA+WPQKV RAH+I APFMDRFAEFV+KVMN AA GHTLQTLKLEEVMRRG EPRTPME AVLSQSMRIVFATLDLMKEGW+G
Sbjct:  122 EEAEQQSLASLVESTFVLAAAGNSYEMGLKAFISTIKEAYERGYTVPALTMEVSFVPTKTAGRDLHPDEVELRSVWIALVYLTLENANWPQKVQRAHEISAPFMDRFAEFVKKVMNGAASGHTLQTLKLEEVMRRGAEPRTPMEAAVLSQSMRIVFATLDLMKEGWSG 289          
BLAST of mRNA_F-distichus_contig9697.19148.1 vs. uniprot
Match: A0A836CF30_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CF30_9STRA)

HSP 1 Score: 151 bits (381), Expect = 1.730e-38
Identity = 75/139 (53.96%), Postives = 97/139 (69.78%), Query Frame = 2
Query:   26 ASLASLLERTFVMAAAGNSYQEGLRAFITVCKEAYERGYTVPALTMEVSFVPTKTAGRDLHADEVELRSIWIALVYLTLENAHWPQKVPRAHDIPAPFMDRFAEFVQKVMNAAAKGHTLQTLKLEEVMRRGMEPRTPME 442
            A LAS++ER+FV+A +   Y  GL+AFI+   +AYE G+ VP L+ME+      +AGR L A+EVELR++W+ LVYLTLE A WPQ+VPRA  I APF + F  FV  +M A + G+ L  LKLEE+MR G EPRTP E
Sbjct:   73 ADLASIVERSFVVACSEGDYTRGLQAFISAIMKAYESGFAVPTLSMEIGMCGNNSAGRPLMAEEVELRTVWMTLVYLTLERARWPQRVPRAAGISAPFKNEFDPFVGNIMRAHSSGYDLNRLKLEEMMRGGTEPRTPFE 211          
BLAST of mRNA_F-distichus_contig9697.19148.1 vs. uniprot
Match: A0A7S2CCD5_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2CCD5_9EUKA)

HSP 1 Score: 122 bits (306), Expect = 6.910e-28
Identity = 67/159 (42.14%), Postives = 96/159 (60.38%), Query Frame = 2
Query:   44 LERTFVMAAAG---NSYQEGLRAFITVCKEAYERGYTVPALTMEVSFVPTKTAGRDLHADEVELRSIWIALVYLTLENAHWPQKVPRA---HDIPAPFMDRFAEFVQKVMNAAAKGHTLQTLKLEEVMRRGMEPRTPMEQAVLSQSMRIVFATLDLMKE 502
            +E TFV AA+G    +Y+ GL  F+   ++AY+ G  VPAL +E+S     TAGR L ADE+ELR++W++LVYLT E   +  K   A     + A    +F  F   ++NA  +G+ L TLKLEEV++     RTP EQA+LSQ+MRI +  +   +E
Sbjct:   75 IESTFVQAASGMGGTNYEFGLMEFVRATRDAYDEGIMVPALNLELSMCQQYTAGRPLQADEIELRTVWLSLVYLTFERVGYESKSTEAFPGQSVAADLRHKFYTFTYDIVNAKKQGYDLATLKLEEVLQSSGIERTPTEQAILSQAMRICYLAIKAAEE 233          
BLAST of mRNA_F-distichus_contig9697.19148.1 vs. uniprot
Match: A0A8J2WDQ0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WDQ0_9STRA)

HSP 1 Score: 122 bits (307), Expect = 7.540e-28
Identity = 74/169 (43.79%), Postives = 104/169 (61.54%), Query Frame = 2
Query:   26 ASLASLLERTFVMAAA--GNSYQEGLRAFITVCKEAYERGYTVPALTMEVSFVPTKTAGRDLHADEVELRSIWIALVYLTLENAHWPQKVPRA--HDIPAPFMDRFAEFVQKVMNAAAKGHTLQTLKLEEVMRR---GMEPRTPMEQAVLSQSMRIVFATLDLMKEGWA 511
            A +A +LE TFV A       Y + L+ FI     AYERG+TV AL++E++  P +TAGR L  +EVELRS+W++LVYLTL N     +   +    +PA    +F  FV  V+NAA  G+TL++LKLE+++RR     E    +E+A+L QSMR+VF TL +  E  A
Sbjct:   59 AGVAQILEVTFVNACMQLATGYVDTLKLFIAAALTAYERGFTVNALSLELAQCPQQTAGRPLMQEEVELRSVWLSLVYLTLANVRHESEASESVGASVPAEIRSQFQTFVYDVVNAAQGGYTLESLKLEDMLRRQGTDSESLGAVEKAILGQSMRVVFLTLTVRDEAAA 227          
BLAST of mRNA_F-distichus_contig9697.19148.1 vs. uniprot
Match: A0A7S0L487_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0L487_9EUKA)

HSP 1 Score: 119 bits (297), Expect = 2.000e-26
Identity = 74/171 (43.27%), Postives = 102/171 (59.65%), Query Frame = 2
Query:   11 QEMGQASLASLLERTFVMAA--AGNSYQEGLRAFITVCKEAYERGYTVPALTMEVSFVPTKTAGRDLHADEVELRSIWIALVYLTLENA-HWPQ----KVPRAHDIPAPFMDRFAEFVQKVMNAAAKGHTLQTLKLEEVMRRGMEPRTPMEQAVLSQSMRIVFATLDLMKE 502
            +E+  + +A ++E +FV A   A   Y + ++ FI   K A+ERG +   L   +S    +TAGR L A+E ELR +W  LVYLTLE   H P            +PA   +RFA+FV  V++A AKG TL +L+LE V R G EPR  +E AVLSQSMR+VF T+ ++KE
Sbjct:   69 RELSISQIAEMVETSFVSACMDAARGYIDTMKLFIVAVKAAFERGVSFERLAQALSGCERQTAGRPLMAEEEELRKVWACLVYLTLEETDHHPHYHAAPASPGQTVPAEQRERFADFVTNVVDARAKGITLPSLQLESVWR-GDEPRNAVETAVLSQSMRVVFLTITVLKE 238          
BLAST of mRNA_F-distichus_contig9697.19148.1 vs. uniprot
Match: A0A7S3B6A2_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3B6A2_9EUKA)

HSP 1 Score: 113 bits (283), Expect = 8.800e-25
Identity = 65/162 (40.12%), Postives = 94/162 (58.02%), Query Frame = 2
Query:   44 LERTFVMAAAGNS---YQEGLRAFITVCKEAYERGYTVPALTMEVSFVPTKTAGRDLHADEVELRSIWIALVYLTLENAHWPQKVPR--AHDIPAPFMDRFAEFVQKVMNAAAKGHTLQTLKLEEVMRRGMEP----RTPMEQAVLSQSMRIVFATLDLMKE 502
            +E TFV AA+G +   Y+  L  FI   ++AY+ G TVPAL +E+S     TAGR L  +E++LRS+W++LVYLT E   +           + A    +F  F   ++NA  +G+ L  LKLEE+++   E     RTPMEQAVLSQ+MRI +  +   +E
Sbjct:   72 IEATFVQAASGANGANYEFSLMEFIRATRDAYDEGITVPALNLELSMCKQYTAGRPLQPEEIDLRSVWLSLVYLTFERVGYASSTGTFPGESVAADLRQKFYTFTYDIVNAKKQGYDLAGLKLEEILQSSEEKSATERTPMEQAVLSQAMRICYLAIQAAEE 233          
BLAST of mRNA_F-distichus_contig9697.19148.1 vs. uniprot
Match: A0A7S0F2H4_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0F2H4_9EUKA)

HSP 1 Score: 112 bits (280), Expect = 3.250e-24
Identity = 66/159 (41.51%), Postives = 92/159 (57.86%), Query Frame = 2
Query:   44 LERTFVMAAAGNS---YQEGLRAFITVCKEAYERGYTVPALTMEVSFVPTKTAGRDLHADEVELRSIWIALVYLTLENAHWPQKVPRA---HDIPAPFMDRFAEFVQKVMNAAAKGHTLQTLKLEEVMRRGMEPRTPMEQAVLSQSMRIVFATLDLMKE 502
            +E  FV AA+G S   Y+ GL  FI   ++AY+ G  VPAL +E+S     TAGR L +DE+ELR++W++LVYLT E   +  K         +      +F  F   ++NA  +G  L  LKLEEV++   E R PMEQAVLSQ+MRI +  +   +E
Sbjct:   92 IEAAFVQAASGMSGANYEFGLMEFIRATRDAYDEGVMVPALNLELSMCQQYTAGRPLQSDEIELRTVWLSLVYLTFERVGYESKSTGGFLGQSVAEDLRQKFYTFTYDIVNAKKQGFDLAGLKLEEVLQSD-EERPPMEQAVLSQAMRICYLAIQATEE 249          
BLAST of mRNA_F-distichus_contig9697.19148.1 vs. uniprot
Match: A0A0G4EGE9_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EGE9_VITBC)

HSP 1 Score: 105 bits (263), Expect = 1.120e-21
Identity = 68/196 (34.69%), Postives = 101/196 (51.53%), Query Frame = 2
Query:   20 GQASLASLLERTFVMAAAGNS--YQEGLRAFITVCKEAYERGYTVPALTMEVSFVPTKTAGRDL-------------------------------HADEVELRSIWIALVYLTLENAHWPQKVPRAHDIPAPFMDRFAEFVQKVMNAAAKGHTLQTLKLEEVMRR--GMEPRTPMEQAVLSQSMRIVFATLDLMKE 502
            G   +A  +E+ F+ A +     YQE LR FI     AYE+G+ +PAL +EVS V   +  R L                                 DE ELR+IW++L++LTL+   WPQ       +   F ++F+ FV  V+ A  +G  L+ LKLEE++ R    + RTP+EQA+L QSMRI+F TL ++++
Sbjct:   10 GTHEVAEAIEKAFIAACSRTDLDYQETLRQFIRPVITAYEKGFNMPALLLEVSTVDKPSIERPLMVGEVTWVTDVPASLTRVHDRLFAFLCHGLCQPDEAELRTIWMSLIFLTLQTVGWPQLRESPSQLSISFEEKFSPFVANVVEAHRRGFDLRRLKLEEMISRTGSDKVRTPIEQAMLQQSMRIIFLTLSILED 205          
BLAST of mRNA_F-distichus_contig9697.19148.1 vs. uniprot
Match: A0A7S0I0A6_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0I0A6_9EUKA)

HSP 1 Score: 88.2 bits (217), Expect = 8.100e-16
Identity = 58/172 (33.72%), Postives = 94/172 (54.65%), Query Frame = 2
Query:    8 TQEMGQASLASLLERTFVMAAA--GNSYQEGLRAFITVCKEAYERGYTVPALTMEVSFVPTKTAGRDLHADEVELRSIWIALVYLTLENAHWPQKVPRAHD-IPAPFMDRFAEFVQKVMNAAAKGHTLQTLKLEEVMRRGMEPRTPMEQAVLSQSMRIVFATLDLMKEGWAG 514
            T+ +   ++A +LE +FV A         + L+ FI   K  +E G T+  ++  +     +TAGR L  +E+ELR +W+ LVY TL     P KV    + + A   +++A  V+ V+ A  +G  L +L+L E ++    P   +E+AVLSQSMR++F TL ++KE   G
Sbjct:   58 TKVLDTTTVADMLEASFVRACMDLAKGLVDTLKLFIVAAKAGFEIGSTIEEVSSGLEACERQTAGRPLMPEELELRHLWVCLVYQTLAFVDHPTKVADVGETVGAELREKYAPLVEGVVVAHVQGRDLPSLQLSEFLQ--PVPTDAVEKAVLSQSMRLIFLTLVVLKEEGEG 227          
BLAST of mRNA_F-distichus_contig9697.19148.1 vs. uniprot
Match: R7Q7C3_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q7C3_CHOCR)

HSP 1 Score: 85.5 bits (210), Expect = 6.150e-15
Identity = 58/163 (35.58%), Postives = 91/163 (55.83%), Query Frame = 2
Query:   65 AAAGNSYQEGLRAFITVCKEAYERGYTVPALTMEVSFVPT--KTAGRD--LHADEVELRSIWIALVYLTLENAHWPQK---VPRAHDIPAPFMDRFAE----FVQKVMNAAAKGHTLQTLKLEEVMRR--GMEPRTPMEQAVLSQSMRIVFATLDLMKEGWAG 514
            A  G  Y + ++AF+  C  AY+ GY++ A+ +E++   T  K  GRD  L+  E E R IW+ALVYLTL   ++       P + D+    MD         V+ V +AAA+G++LQT K+E  +++  G +P +  E ++ SQ  RI+FAT +L+ E   G
Sbjct:   82 AGVGPEYDDAIQAFVIACIAAYKAGYSITAIKLELAANETQAKYMGRDISLNDQEKETRLIWLALVYLTLAKFNFASDRTPPPVSADLQGSKMDSLVPGLTGLVESVCDAAARGYSLQTFKMELGLKKDTGDKPLSGAEASIRSQWSRIIFATYNLLPENLRG 244          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig9697.19148.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A6H5KMS3_9PHAE1.860e-8785.12Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CF30_9STRA1.730e-3853.96Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A7S2CCD5_9EUKA6.910e-2842.14Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
A0A8J2WDQ0_9STRA7.540e-2843.79Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S0L487_9EUKA2.000e-2643.27Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A0A7S3B6A2_9EUKA8.800e-2540.12Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A7S0F2H4_9EUKA3.250e-2441.51Hypothetical protein n=1 Tax=Phaeocystis antarctic... [more]
A0A0G4EGE9_VITBC1.120e-2134.69Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
A0A7S0I0A6_9EUKA8.100e-1633.72Hypothetical protein n=1 Tax=Phaeocystis antarctic... [more]
R7Q7C3_CHOCR6.150e-1535.58Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig9697contigF-distichus_contig9697:1426..6774 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score76.6
Seed ortholog evalue1.2e-11
Seed eggNOG ortholog45157.CMT178CT
Hectar predicted targeting categoryother localisation
EggNOG OGs2E65F@1,2SCWR@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-03_001680.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size1930
Cds size501
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig9697.19148.1prot_F-distichus_contig9697.19148.1Fucus distichus monoicouspolypeptideF-distichus_contig9697 2839..6758 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931147.8906553-UTR-F-distichus_contig9697:1425..28381622931147.8906553-UTR-F-distichus_contig9697:1425..2838Fucus distichus monoicousUTRF-distichus_contig9697 1426..2838 -
1690886178.9532132-UTR-F-distichus_contig9697:1425..28381690886178.9532132-UTR-F-distichus_contig9697:1425..2838Fucus distichus monoicousUTRF-distichus_contig9697 1426..2838 -
1622931148.0048969-UTR-F-distichus_contig9697:6758..67741622931148.0048969-UTR-F-distichus_contig9697:6758..6774Fucus distichus monoicousUTRF-distichus_contig9697 6759..6774 -
1690886179.0243113-UTR-F-distichus_contig9697:6758..67741690886179.0243113-UTR-F-distichus_contig9697:6758..6774Fucus distichus monoicousUTRF-distichus_contig9697 6759..6774 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931147.9165924-CDS-F-distichus_contig9697:2838..29611622931147.9165924-CDS-F-distichus_contig9697:2838..2961Fucus distichus monoicousCDSF-distichus_contig9697 2839..2961 -
1690886178.9697468-CDS-F-distichus_contig9697:2838..29611690886178.9697468-CDS-F-distichus_contig9697:2838..2961Fucus distichus monoicousCDSF-distichus_contig9697 2839..2961 -
1622931147.9447603-CDS-F-distichus_contig9697:3738..38101622931147.9447603-CDS-F-distichus_contig9697:3738..3810Fucus distichus monoicousCDSF-distichus_contig9697 3739..3810 -
1690886178.980035-CDS-F-distichus_contig9697:3738..38101690886178.980035-CDS-F-distichus_contig9697:3738..3810Fucus distichus monoicousCDSF-distichus_contig9697 3739..3810 -
1622931147.96692-CDS-F-distichus_contig9697:4433..45681622931147.96692-CDS-F-distichus_contig9697:4433..4568Fucus distichus monoicousCDSF-distichus_contig9697 4434..4568 -
1690886178.9917703-CDS-F-distichus_contig9697:4433..45681690886178.9917703-CDS-F-distichus_contig9697:4433..4568Fucus distichus monoicousCDSF-distichus_contig9697 4434..4568 -
1622931147.989728-CDS-F-distichus_contig9697:6587..67581622931147.989728-CDS-F-distichus_contig9697:6587..6758Fucus distichus monoicousCDSF-distichus_contig9697 6588..6758 -
1690886179.0074086-CDS-F-distichus_contig9697:6587..67581690886179.0074086-CDS-F-distichus_contig9697:6587..6758Fucus distichus monoicousCDSF-distichus_contig9697 6588..6758 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig9697.19148.1

>prot_F-distichus_contig9697.19148.1 ID=prot_F-distichus_contig9697.19148.1|Name=mRNA_F-distichus_contig9697.19148.1|organism=Fucus distichus monoicous|type=polypeptide|length=167bp
MGQASLASLLERTFVMAAAGNSYQEGLRAFITVCKEAYERGYTVPALTME
VSFVPTKTAGRDLHADEVELRSIWIALVYLTLENAHWPQKVPRAHDIPAP
FMDRFAEFVQKVMNAAAKGHTLQTLKLEEVMRRGMEPRTPMEQAVLSQSM
RIVFATLDLMKEGWAG*
back to top

mRNA from alignment at F-distichus_contig9697:1426..6774-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig9697.19148.1 ID=mRNA_F-distichus_contig9697.19148.1|Name=mRNA_F-distichus_contig9697.19148.1|organism=Fucus distichus monoicous|type=mRNA|length=5349bp|location=Sequence derived from alignment at F-distichus_contig9697:1426..6774- (Fucus distichus monoicous)
AGGAGTTACTCAAGAGATGGGACAGGCGTCTTTGGCGAGCTTGCTGGAGA GGACCTTCGTCATGGCGGCGGCGGGCAACAGCTACCAGGAGGGCCTGAGG GCGTTTATAACGGTTTGTAAGGAGGCCTACGAGCGGGGCTACACGGTGCC AGCCTTGACTATGGAAGTTTCGTTTGTGCCCACCAAGGTGAGAGAGCAAC TGTGACTTTTGATTGATCCAATTTATCCATCTCGGTCCCTCCCCACCTCA GTGAACGAGGCACACGAAACCTAAACGGGACCATATTTGTGAAAGCCACC TTATTCGTGATATGTCTTTGTTGCTTCTAGGAGCGCCTCATATGCAGCCA AGACCCAGGTGTGGGTGTACTGCCGCTGATGTAAAGTGCATACCTAGTAT ATATATAGTGTTTTGTATGCAGTATATCGAGATGGAAGCAACATACACAA TCTTTGTCGGGGCACGGCAATTGAAAACCGTTTCAATAGTACAGCACAGT ACAGTGGGGTGCGGCGTCTCGTAACGCTTCATTGGCTTTACAAAAGCACT TGATGAAGTGAGCAATCAACAGGGCGCAGAACAGTCTTGCTGACTGTATG TATGTTTGTATGTATGTATGGTCACACATATAGCAAGACTATGGATCAAC ACGATAAGGTTGCCAATCCTGCACGTGGTCAGCTGAACAGGGAAAATTGA TATTTCCCTGTCCGCGTACGCGCCTGAGAATTTGGTTTCGCGAGACGGGT TCGGCAATCCCGTCCCGCGTGAGCCTGCTCGTCTCCAAACTCAGGCTGAA TCTGGTGCTTGTGTAAGGGATTCCTCCCGAGTTCCGCGGCGACGTCAATT TTTGAAACCGCTATACGTCATCGGGTCAGTCCCGAGTTAATCGGGTCACG CAAATGCGTACCGATGGCGTTCACTGCCGAGAGTCCGCTCGGCACAAGGC AAGTAAACCTCAAGGTAGTTCCGAACGAGTGCTACCTTGGCAGGTCATCA TGGACCAATACATATGCGCCTCTCTTTCCCACACCCACTATTAATATGAA GTGGACATGTTGAAAGTATCGGCGGTTTGTAAGCACCAAGGAATGTTCGA TGGTATTTTTCCCCTTGGGCTGGAATGCTTCTCCTGGTGGAGCGTTTTTG CGCCCATGACCTTCGTATTTGTACTCTTATCGAAAACGTTTCATTATCTC TGCAACAATTCGAAAAAAGTACCCAGGTAGCAAAATATACTGGTGCGCTG TCTTGACCTGTGACTCTTAGAAAACAGAAAAAAATAATTCTTTTTTTTTT TCTGATATATTCTAGACATTTCTGAAAAAAAAAACAAGCGGAGAGGTTTT ATGGGACAAAACCCCCCCGATCCATCCAAACATGTTTTTCTGATACAGGC ATTTCTGATATCGGGGAGCTTAATGGCTCATTTTTTTTGTGTTGGGTGCT CTTGCGTACGTTTGCATGGTACGGTACGTTGAGGCCGGCGAGCTGCATTT ATGTGGTTGTGCGAGGCCCACACGATCGAAGATCACGTCCTGTGCCATGC CACGGTTGGAAGTAGCACAAATCTTCTCGAAAGCCGAGAAATTTCGGCGT CTGCACCCACTACAGTTGTACTCTACCAGAAAGCATCTTCATTGTGTATA CCGTCTACTGCATGTTTCAAATGTTGCTGCCACTCACAACACACCGCGAA GGACTGCTGCGGGTAGGCTCAATACCGTGGCTGCCACCGCCGCAACGCAG TCATCCATGTCTGTCTCCATCCCACGGGAGGTCTATGTTGGAAGACATGT TTGAACGTTTGCGTATGTCCGTCCGGGGGACGCCTTCGTATCTCTTGACG CGGTGATTTCTGATGAAGGTTTTCCTGATGAATTCTTACTCCATCTTTTC CATTATTTTTACCAACTCCTGCTCCGAAAGTAGTTCCCCAGAAAAAAAAG TGATCAGACACCGTTTTTTTCTTACCCCATCAACTAGGTTTTGCGGCCAA TATAAAATAAAATAAAAACGTTTTTCGATCACTTTTTTTTTGTCCCACAA GAGTCAGCCTAATACGTCTACTGTATATGGCGTGTATAGGCGGAGATCTT GACATGAAATCGCTAATATCATGAAATGATGGCGTCTCGCCGGAACGAGA TGTGTTTTTTTTTATGTTTTTTGTTGTTGTATTTTTTTAAATATAAAAAC ATGCAGACCGCGGGACGCGATCTTCACGCCGATGAGGTGGAGCTGCGGTC GATCTGGATCGCCCTCGTTTATCTCACGCTAGAAAACGCACACTGGCCCC AGAAGGTGCCACGGGCTCACGACATCCCTGCACCCTTCATGGTAAGATCC GCCTTACGTCATTTTGCATCATAGCCTGACATGGATTGTTAGCTTTAATA ACAGAATGATATAACTCTACAGCGTGTGAAACCGCTTGATCGTCGGCGCC TACAGCTACCCGTATATATTCCGGTATATTCTATACGAGTAAGTGCTTGC GATAACATTTTCCTAGAAACTGTGTGCTGTATACCTGACTGGTGTTGTTT GTGGGTGGTGATTGATTCTCTTCTTGTGCTCGTTTGTTTGATAAAATGTA GTAAGATGGCCACCTTCCCGTTGACAGAAAGCAGTAGCGGACTTCCGGCG GACACGATTTCGATCGTCTCGCGATGCACGGCACGGCGATCCTCCCCCAC GGCGATTTCGAACAAGTCCTCCCGGTCCACGTCCTCTTAACAGAGCAGCA AGATCGATGAACATTATATGGTCTTACAGATGCCGTGCCGAATGGTACCG TAGCGGTATGGCTTAGGCTATGGTCGTGTCTTCATACCGTACACCGCCTG AGCGTCAACCTATAAGTAGAATCAACCGCGATCTGTTGCGCCCGGTCGGG GGCATTCTATGAGGGGGAAACTTCTTCCAATATATGTATTGCCGGTATCT ACCTGTGTACCCAGGATCGGTTCGCAGAGTTCGTGCAGAAGGTGATGAAC GCCGCCGCGAAGGGACACACGCTTCAGACACTCAAGGTAGGCACATCGCA ACACAAGCAATACCGTATGGAGCATGAATAGAGTAGGATGGAAGACAAAA CAATTTGGTACGGTATGATACGGTAGGGTACAGCGCGATACGGTACGGTA CTCTCAAGTACGGCATGAAAAAGGGGCATGACAGTGCGCTGCGGTAGAAT GGTATGGTATGGCACGGCACGGCATGATGCGTAATATTTCGTTGCGGTTC TGTTGTGGTAAGATCCATTCACCTCGCCATGGTGTGAACTGGTTTGTGCG AAAGCCGTCTCGGTTTAGTCATAGTCTGACCTGCGGTCGTGTTGGCCTTG ATCGTTTTTTCTTCGCCCCGCGCGACGATATCTTGACGCCCTCGAATGGC AGAGGCGATCATGTACTTGTCCACTATCATAGCGACGGAGCATACGATCG CCAAATCTTGGTAGTTACGACTAGTCTTGGGCAGTTAACACTAGTCTTGG TAGGGAGGAGCAAAAGTGTGAAAGCGCGGGACAATTTACCCAACATCTCA TGCCTCGAGGCCGCGATATCTGATCCCTTGACCCAGCGAAATCTAACGGC CTCGAGCCCGCGACATTTAAGTGTATACTGTAGCATGCTATGGACTGCCA TGATCGCCATCGTGGTTACCACAACACAAACACCTTTTCGTACTGTAACG TCCTGTACTATACTTGACCGTGTATGTTTATCCCGTACCGTTTCATGCCG TACAGTTTTATACCGTACCGTGTTATACCGTACCTTGCTGTGCTGTGCTG TGCTGTGCTGTAGCTGGAGGAAGTGATGCGGAGGGGGATGGAACCGCGGA CGCCCATGGAACAAGCGGTGCTCTCCCAGAGCATGCGGATAGTGTTCGCC ACGCTAGACCTCATGAAGGAGGGCTGGGCCGGATAAAGCCGGTTGGACCT CATCAAAAACACGACGGGGACTGAACCAAGTCGGTTGTTGTGACTGTCCA GACGCGGGCCCGGTATAGATCCTCTCTTGCCTGGCCTGGGAGGCAACGCC GTAGCAACCCGCCTTGGAAGTAGTAGTGAAGCGGGATTTGTTGTGTTGGC TGTAACGGAGCGCAGTGCTTTATCGTCATTCTACATGGGAACGTGAAATC ACAACGCGCTCGATCATGCGGCGTTTTAAAGAAACGTAACCCTGTAAAAG AGGCAGGCTAACTATAATATTAGGCTGTTGCTGATGGAGGGCTGGCCAAA ACTGCAGCGTGGTGGACGGTAAAATCCCAAGGAGTCAATAGTTCCGCGTC GTTGTCGTTCGATCTAACAAAAGGTCGCCGACAACGCTGACGTGTTTTGC CTTTACGATGGCGAATGGAAACCCATTTGACGGTGAGTAGAAAAGCCACA GCCAGAGAGGCACGAAATGGTACATGGTACCGAACCTCGTCTTTTGACCA CCACATGTTTTCATTGGCAGCGGTGTAAGTGCGTTGATCGCTGGTATTCG GAACACACAACAACGTTTGCATTGATTTTTTTTTTTCATCGAGTTCGTAC TCGGTTAAGTCGATCCATGTTATCTTGTAACAGTACAAAACAGTGTTGTA GACAACACAGTGAATTTTGGGGGCTTTTTCGCACGGTCTTTCCTTCCTCT GTGGAGTCTTTCTTGAGTCTTTCTTGAGTCTCTCTTGAGTTGAGCCTTTT AATGCCTGGCGAGCCACTAGATTTAACGGGAACGTACAAGCAGTAGACTG TAGTACCGAAGCTGATCAGAAGACTCTCCAGAAGAGGCTGTCCAAATCCC CGCATGTGCAAACATTCGATTTTGATTCCCTTTGTACCCGGGTAGATCGT TGTTGAGCCCTTTGTACCCGGGGAACTCGTGTTGTTTCGAGATGGACGCG TGCACTGCCGTGTGTGGGCCTCAGGCATTCGGCATTGTGTTCTGTGCCAG TTCTTGGTCGTATCAATCGCTTTTGTTTGGTGGAAGTAGTTGAAGTCTAT TAGAGGAGTCGACCACAGCGGGTGGTTTGCTGATTGAGACTTTGTTATAG CTTCACAAGTTAATCATCAGTCCTTTCTATGTGGGTATTGTGGGTATATT TGGAAAACGAAACCGCCTTGCAGGAGACGAAATAAGCTGTACCTTATCTG TCGCGGCTGTAAAACTTTGATACATACGTGTATGACGCAGTATAGTATCG TATCGTTTTGCATAGGGTACAACCTACAGTACAGTGGGATGCAAATACGT GGTGGAAGATGTACTATAATGCATTTAGCGTCATATTTGATTTTGAAGCG TCGCCATCGAAATCATAAGCAAGTGTCGGTGTCATTTCAAGTGCAAACG
back to top

Coding sequence (CDS) from alignment at F-distichus_contig9697:1426..6774-

>mRNA_F-distichus_contig9697.19148.1 ID=mRNA_F-distichus_contig9697.19148.1|Name=mRNA_F-distichus_contig9697.19148.1|organism=Fucus distichus monoicous|type=CDS|length=1002bp|location=Sequence derived from alignment at F-distichus_contig9697:1426..6774- (Fucus distichus monoicous)
ATGGGACAGGCGTCTTTGGCGAGCTTGCTGGAGAGGACCTTCGTCATGGC
GGCGGCGGGCAACAGCTACCAGGAGGGCCTGAGGGCGTTTATAACGGTTT
GTAAGGAGGCCTACGAGCGGGGCTACACGGTGCCAGCCTTGACTATGGAA
GTTTCGTTTGTGCCCACCAAGATGGGACAGGCGTCTTTGGCGAGCTTGCT
GGAGAGGACCTTCGTCATGGCGGCGGCGGGCAACAGCTACCAGGAGGGCC
TGAGGGCGTTTATAACGGTTTGTAAGGAGGCCTACGAGCGGGGCTACACG
GTGCCAGCCTTGACTATGGAAGTTTCGTTTGTGCCCACCAAGACCGCGGG
ACGCGATCTTCACGCCGATGAGGTGGAGCTGCGGTCGATCTGGATCGCCC
TCGTTTATCTCACGCTAGAAAACGCACACTGGCCCCAGAAGGTGCCACGG
GCTCACGACATCCCTGCACCCTTCATGACCGCGGGACGCGATCTTCACGC
CGATGAGGTGGAGCTGCGGTCGATCTGGATCGCCCTCGTTTATCTCACGC
TAGAAAACGCACACTGGCCCCAGAAGGTGCCACGGGCTCACGACATCCCT
GCACCCTTCATGGATCGGTTCGCAGAGTTCGTGCAGAAGGTGATGAACGC
CGCCGCGAAGGGACACACGCTTCAGACACTCAAGGATCGGTTCGCAGAGT
TCGTGCAGAAGGTGATGAACGCCGCCGCGAAGGGACACACGCTTCAGACA
CTCAAGCTGGAGGAAGTGATGCGGAGGGGGATGGAACCGCGGACGCCCAT
GGAACAAGCGGTGCTCTCCCAGAGCATGCGGATAGTGTTCGCCACGCTAG
ACCTCATGAAGGAGGGCTGGGCCGGATAACTGGAGGAAGTGATGCGGAGG
GGGATGGAACCGCGGACGCCCATGGAACAAGCGGTGCTCTCCCAGAGCAT
GCGGATAGTGTTCGCCACGCTAGACCTCATGAAGGAGGGCTGGGCCGGAT
AA
back to top