mRNA_F-distichus_contig96422.19099.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_F-distichus_contig96422.19099.1
Unique Name	mRNA_F-distichus_contig96422.19099.1
Type	mRNA
Organism	Fucus distichus monoicous (Fucus distichus monoicous)

Homology

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BLAST of mRNA_F-distichus_contig96422.19099.1 vs. uniprot
Match: D7FYL8_ECTSI (Anaphase-promoting complex subunit 4 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYL8_ECTSI)

HSP 1 Score: 248 bits (632), Expect = 1.480e-73
Identity = 137/212 (64.62%), Postives = 162/212 (76.42%), Query Frame = 1

Query:    1 AEYGSQAEDGFTLLQGIKERPVSVLASCDSGGVVVLS-CGALKVMTIDLRSHRTSGPPKGKGKASS----DSPVQGTKKKLPVQHRR--SG---GDVNGTGTGPGLRPLQLTLSADLSLLSAIVEVDGHIELIQVDLPLLWRRRHELKPLSMQYTALKAVLGRLAAYVPRLPHLWNNTLQSLEEALSKLEELLPRFGYDGDINPRDELLHLV 606
            +EY SQA+DGF LLQG+KERPVSVLAS DS GVVVLS CGA +++TIDLR+HR   P KGKG+AS     DSP Q   ++ P Q     SG    +V+  GTGP LRPLQLTLSADLS+L+A+VE DG +ELIQVDLPLLWR+RHELKPL+MQ+TA +AV+GRL   VPRLP LW  TLQ+LE  L  LE+LLPRFGYD DI  +DE +HLV
Sbjct:  169 SEYSSQADDGFMLLQGMKERPVSVLASADSAGVVVLSICGAYRLITIDLRAHRK--PTKGKGRASGGGRVDSPRQRRFRRSPGQDGAGFSGLTESEVDIDGTGPALRPLQLTLSADLSVLTALVEFDGQVELIQVDLPLLWRQRHELKPLAMQFTAFRAVIGRLVVSVPRLPQLWKGTLQALETKLGNLEDLLPRFGYDKDITAKDEFIHLV 378

The following BLAST results are available for this feature:

BLAST of mRNA_F-distichus_contig96422.19099.1 vs. uniprot

BLAST of mRNA_F-distichus_contig96422.19099.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
D7FYL8_ECTSI	1.480e-73	64.62	Anaphase-promoting complex subunit 4 n=2 Tax=Ectoc...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
F-distichus_contig96422	contig	F-distichus_contig96422:114..1744 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	248.1
Seed ortholog evalue	3.6e-63
Seed eggNOG ortholog	2880.D7FYL8
Preferred name	ANAPC4
KEGG ko	ko:K03351
KEGG Pathway	ko04110,ko04111,ko04113,ko04114,ko04120,ko04914,ko05166,map04110,map04111,map04113,map04114,map04120,map04914,map05166
KEGG Module	M00389
Hectar predicted targeting category	other localisation
GOs	GO:0000003,GO:0000151,GO:0000152,GO:0000209,GO:0003006,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005680,GO:0005737,GO:0005829,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0007088,GO:0007275,GO:0007346,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009790,GO:0009791,GO:0009793,GO:0009896,GO:0009908,GO:0009987,GO:0010154,GO:0010498,GO:0010564,GO:0010638,GO:0010965,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0019899,GO:0019902,GO:0019903,GO:0019941,GO:0022414,GO:0030071,GO:0030163,GO:0031145,GO:0031331,GO:0031461,GO:0031974,GO:0031981,GO:0032270,GO:0032436,GO:0032446,GO:0032501,GO:0032502,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0035670,GO:0036211,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045732,GO:0045787,GO:0045840,GO:0045842,GO:0045862,GO:0045931,GO:0048316,GO:0048367,GO:0048437,GO:0048438,GO:0048440,GO:0048467,GO:0048481,GO:0048518,GO:0048522,GO:0048608,GO:0048731,GO:0048827,GO:0048856,GO:0050789,GO:0050794,GO:0051128,GO:0051130,GO:0051247,GO:0051603,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0061458,GO:0062033,GO:0065007,GO:0070013,GO:0070647,GO:0070979,GO:0071704,GO:0090068,GO:0090567,GO:0099402,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1901800,GO:1901970,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902494,GO:1903052,GO:1903364,GO:1905818,GO:1905820,GO:1990234,GO:2001252
EggNOG free text desc.	anaphase-promoting complex-dependent catabolic process
EggNOG OGs	KOG4640@1,KOG4640@2759
COG Functional cat.	L
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko00002,ko03036,ko04121
Exons	4
Model size	609
Cds size	606
Stop	0
Start	0

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_F-distichus_contig96422.19099.1	prot_F-distichus_contig96422.19099.1	Fucus distichus monoicous	polypeptide	F-distichus_contig96422 115..1744 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622931142.0755858-CDS-F-distichus_contig96422:114..190	1622931142.0755858-CDS-F-distichus_contig96422:114..190	Fucus distichus monoicous	CDS	F-distichus_contig96422 115..190 -
1690886176.1951919-CDS-F-distichus_contig96422:114..190	1690886176.1951919-CDS-F-distichus_contig96422:114..190	Fucus distichus monoicous	CDS	F-distichus_contig96422 115..190 -
1622931142.0939176-CDS-F-distichus_contig96422:346..504	1622931142.0939176-CDS-F-distichus_contig96422:346..504	Fucus distichus monoicous	CDS	F-distichus_contig96422 347..504 -
1690886176.2067776-CDS-F-distichus_contig96422:346..504	1690886176.2067776-CDS-F-distichus_contig96422:346..504	Fucus distichus monoicous	CDS	F-distichus_contig96422 347..504 -
1622931142.1077518-CDS-F-distichus_contig96422:811..1138	1622931142.1077518-CDS-F-distichus_contig96422:811..1138	Fucus distichus monoicous	CDS	F-distichus_contig96422 812..1138 -
1690886176.2158668-CDS-F-distichus_contig96422:811..1138	1690886176.2158668-CDS-F-distichus_contig96422:811..1138	Fucus distichus monoicous	CDS	F-distichus_contig96422 812..1138 -
1622931142.1267724-CDS-F-distichus_contig96422:1699..1744	1622931142.1267724-CDS-F-distichus_contig96422:1699..1744	Fucus distichus monoicous	CDS	F-distichus_contig96422 1700..1744 -
1690886176.2249231-CDS-F-distichus_contig96422:1699..1744	1690886176.2249231-CDS-F-distichus_contig96422:1699..1744	Fucus distichus monoicous	CDS	F-distichus_contig96422 1700..1744 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at F-distichus_contig96422:114..1744-
coding sequence from alignment at F-distichus_contig96422:114..1744-

protein sequence of mRNA_F-distichus_contig96422.19099.1

>prot_F-distichus_contig96422.19099.1 ID=prot_F-distichus_contig96422.19099.1|Name=mRNA_F-distichus_contig96422.19099.1|organism=Fucus distichus monoicous|type=polypeptide|length=202bp
AEYGSQAEDGFTLLQGIKERPVSVLASCDSGGVVVLSCGALKVMTIDLRS
HRTSGPPKGKGKASSDSPVQGTKKKLPVQHRRSGGDVNGTGTGPGLRPLQ
LTLSADLSLLSAIVEVDGHIELIQVDLPLLWRRRHELKPLSMQYTALKAV
LGRLAAYVPRLPHLWNNTLQSLEEALSKLEELLPRFGYDGDINPRDELLH
LV

mRNA from alignment at F-distichus_contig96422:114..1744-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_F-distichus_contig96422.19099.1 ID=mRNA_F-distichus_contig96422.19099.1|Name=mRNA_F-distichus_contig96422.19099.1|organism=Fucus distichus monoicous|type=mRNA|length=1631bp|location=Sequence derived from alignment at F-distichus_contig96422:114..1744- (Fucus distichus monoicous)
GCGGAATATGGCTCGCAGGCGGAGGATGGTTTCACGCTCTTGCAGGTCGG
TGTCGTACATTCGAAGATACAGCATTCTTATTACAAAACCTTGATACTGT
ATACTGTAATACAATACAATCTCTTCAACACCTTCGGTTGGTAAGAATCG
AACTCACGACTTCCGCACTAGCAGGTGTGCAGGTTACCTACTAGACCACT
CGGGCGACGACGGTAACAAGTTACTATTATAATTGGAATAGAAACCGCTC
GTGACTTTCCTACGACAACCCCACACACGACATGCACGTCTACTCAGAGG
TCTCCATAGCTCTCTCGCATCAATCTAAGTCCCCCTCATTACAGATTGGA
GACCAACACTCTATGCTTGAAAAAGGCGGGGAAAACGGCGAATCGCTGGT
AGGGCGCGACAACCAATAAGGGCAAGATGCTATTTAGTGCGCTATTCAGA
CAGCAGAGATCCCTTGTCTATCGGCGCGGCAAACGAAAGTATTATCGGCC
CGTCGTTGTACACTCTCGTTGGCCTATTATTGCCTCTTATTGCCTTCCCG
TGCTATCGCCATCTCATTGCCCCCTCATTGCCCACTCGTCATCTTACTGC
TTTCAGGGAATAAAGGAGCGCCCTGTGAGTGTCCTGGCGAGCTGCGACTC
GGGAGGGGTCGTTGTCCTCTCCTGCGGAGCGTTGAAAGTGATGACGATCG
ATCTTAGGAGTCACAGGACCTCCGGCCCGCCGAAGGGGAAGGGGAAAGCG
TCCTCGGATAGCCCTGTACAGGGCACGAAAAAGAAACTTCCAGTCCAGCA
CCGACGTAGCGGCGGAGACGTCAATGGTACCGGTACGGGGCCAGGGCTGC
GGCCTTTGCAGCTCACCCTCAGCGCGGATCTCAGTCTTCTCTCCGCCATC
GTAGAGGTAGACGGACACATCGAGCTCATCCAGGTGACGAGGTGACGGCT
GGTCACGTTGCCGTGGATTAATTATTTAATAGGATGGATGTCGCACGCTG
GGAATTCCTAGTGCCAAAAAGAAGTGCTCGTAGACACGGCACGCAACAGA
CTGCTGCACGATCCGTTGCCTCGCTCGTCTGCGCAATTGTTCACGCCTGA
TTCTTCCTCTTCCAGCAAAGTACTCCGTAGACTTTTCAAATGCTTCACGT
GAAAAGCTAAGCTAAGCTAACGGTACTGTACTGTACTATACTATCCTCGA
TCTCACACGACATGGATATGGTGGGCGTCATTTGACGAAGGTGGACCTGC
CTCTACTTTGGCGACGACGTCACGAGCTGAAACCATTGTCCATGCAATAC
ACCGCGCTTAAGGCGGTCCTCGGGCGCTTAGCGGCCTATGTGCCGCGCTT
GCCTCATCTCTGGAACAATACCCTGCAGTCGCTGGAGGAAGCTCTTAGGT
GGGAGAGCATGGCTTATTTTCCATTTTTTGTTGTATGAGATGGCGCAGTT
CCTCGTTGGAGTCATCTTACCCCCCCCCAAACAAACAAACAAACAAACAA
ACTCAAGTCGCGATCGCTTCTTGTGGGGCGTGCGTGCGCGCACTTCTTTC
GCAGCAAGCTGGAAGAGCTTCTTCCGAGATTCGGCTACGATGGGGACATA
AATCCAAGGGACGAACTGCTGCACCTCGTGA

Coding sequence (CDS) from alignment at F-distichus_contig96422:114..1744-

>mRNA_F-distichus_contig96422.19099.1 ID=mRNA_F-distichus_contig96422.19099.1|Name=mRNA_F-distichus_contig96422.19099.1|organism=Fucus distichus monoicous|type=CDS|length=1212bp|location=Sequence derived from alignment at F-distichus_contig96422:114..1744- (Fucus distichus monoicous)
GCGGAATATGGCTCGCAGGCGGAGGATGGTTTCACGCTCTTGCAGGCGGA
ATATGGCTCGCAGGCGGAGGATGGTTTCACGCTCTTGCAGGGAATAAAGG
AGCGCCCTGTGAGTGTCCTGGCGAGCTGCGACTCGGGAGGGGTCGTTGTC
CTCTCCTGCGGAGCGTTGAAAGTGATGACGATCGATCTTAGGAGTCACAG
GACCTCCGGCCCGCCGAAGGGGAAGGGGAAAGCGTCCTCGGATAGCCCTG
TACAGGGCACGAAAAAGAAACTTCCAGTCCAGCACCGACGTAGCGGCGGA
GACGTCAATGGTACCGGTACGGGGCCAGGGCTGCGGCCTTTGCAGCTCAC
CCTCAGCGCGGATCTCAGTCTTCTCTCCGCCATCGTAGAGGTAGACGGAC
ACATCGAGCTCATCCAGGGAATAAAGGAGCGCCCTGTGAGTGTCCTGGCG
AGCTGCGACTCGGGAGGGGTCGTTGTCCTCTCCTGCGGAGCGTTGAAAGT
GATGACGATCGATCTTAGGAGTCACAGGACCTCCGGCCCGCCGAAGGGGA
AGGGGAAAGCGTCCTCGGATAGCCCTGTACAGGGCACGAAAAAGAAACTT
CCAGTCCAGCACCGACGTAGCGGCGGAGACGTCAATGGTACCGGTACGGG
GCCAGGGCTGCGGCCTTTGCAGCTCACCCTCAGCGCGGATCTCAGTCTTC
TCTCCGCCATCGTAGAGGTAGACGGACACATCGAGCTCATCCAGGTGGAC
CTGCCTCTACTTTGGCGACGACGTCACGAGCTGAAACCATTGTCCATGCA
ATACACCGCGCTTAAGGCGGTCCTCGGGCGCTTAGCGGCCTATGTGCCGC
GCTTGCCTCATCTCTGGAACAATACCCTGCAGTCGCTGGAGGAAGCTCTT
AGGTGGACCTGCCTCTACTTTGGCGACGACGTCACGAGCTGAAACCATTG
TCCATGCAATACACCGCGCTTAAGGCGGTCCTCGGGCGCTTAGCGGCCTA
TGTGCCGCGCTTGCCTCATCTCTGGAACAATACCCTGCAGTCGCTGGAGG
AAGCTCTTAGCAAGCTGGAAGAGCTTCTTCCGAGATTCGGCTACGATGGG
GACATAAATCCAAGGGACGAACTGCTGCACCTCGTGCAAGCTGGAAGAGC
TTCTTCCGAGATTCGGCTACGATGGGGACATAAATCCAAGGGACGAACTG
CTGCACCTCGTG