mRNA_F-distichus_contig96362.19091.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig96362.19091.1
Unique NamemRNA_F-distichus_contig96362.19091.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig96362.19091.1 vs. uniprot
Match: D7FMH4_ECTSI (Smr domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMH4_ECTSI)

HSP 1 Score: 112 bits (279), Expect = 1.410e-24
Identity = 71/162 (43.83%), Postives = 89/162 (54.94%), Query Frame = 1 
Query:    1 KVLALPEPSECPIRGRLSVDLHLLRKAEALSVLGAVFDALRRRRAGEAP------PSQPPMXXXXXXXXXXXTVDDTDATYSSAAARGTDPRGEGKAGASSTPTYACKAFSQLEVVVGRGSHSKTGVGRLKPVVLKYVTDRGFREEAVRGEQGGGVVSISLS 468
            KVL LPEPS+C   G+LSVDLHLLR+AEAL+VL  V  A+RRR AGE        P  P                      SS+ A  T P  +   G       +   F+ LEVVVGRG+HS  GV RL+P V+ Y+  +GFR EAV G++G GVV + L+
Sbjct:  778 KVLRLPEPSQCSTPGQLSVDLHLLRRAEALNVLETVLHAIRRR-AGEHTGVLVNGPRAPKPSQQHKEHPGVVAAPGGHTEPSSSGASYTPPAAQQGEGLQHDRVMSVLKFASLEVVVGRGAHSVAGVPRLRPCVMGYLAGKGFRAEAVEGDKGKGVVVVGLT 938
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BLAST of mRNA_F-distichus_contig96362.19091.1 vs. uniprot
Match: A0A6H5KDH3_9PHAE (Smr domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDH3_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 2.270e-23
Identity = 71/163 (43.56%), Postives = 90/163 (55.21%), Query Frame = 1 
Query:    1 KVLALPEPSECPIRGRLSVDLHLLRKAEALSVLGAVFDALRRRRAGEAP------PSQPPMXXXXXXXXXXXTV--DDTDATYSSAAARGTDPRGEGKAGASSTPTYACKAFSQLEVVVGRGSHSKTGVGRLKPVVLKYVTDRGFREEAVRGEQGGGVVSISL 465
            KVL LPEPS+C   G+LSVDLHLLR+AEAL+VL  V  A+RRR AGE        P  P                   T+ +YS A+   T P  +   G         + F+ LEVVVGRG+HS  GV RL+P V+ Y+  +GFR E V G++G GVV + L
Sbjct:  873 KVLRLPEPSQCSTPGQLSVDLHLLRRAEALNVLETVLHAIRRR-AGEHSRVLVNRPRAPKQSQQLKEHPDVVAAAAGQTEPSYSGASY--TPPVAQQGEGLQHDRVIRVQKFASLEVVVGRGAHSVAGVPRLRPCVMGYLAGKGFRAEGVEGDRGKGVVVVGL 1032
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig96362.19091.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FMH4_ECTSI1.410e-2443.83Smr domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KDH3_9PHAE2.270e-2343.56Smr domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig96362contigF-distichus_contig96362:11..723 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size713
Cds size309
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig96362.19091.1prot_F-distichus_contig96362.19091.1Fucus distichus monoicouspolypeptideF-distichus_contig96362 173..481 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931141.0839005-UTR-F-distichus_contig96362:10..1721622931141.0839005-UTR-F-distichus_contig96362:10..172Fucus distichus monoicousUTRF-distichus_contig96362 11..172 +
1690886175.7013307-UTR-F-distichus_contig96362:10..1721690886175.7013307-UTR-F-distichus_contig96362:10..172Fucus distichus monoicousUTRF-distichus_contig96362 11..172 +
1622931141.12858-UTR-F-distichus_contig96362:481..7231622931141.12858-UTR-F-distichus_contig96362:481..723Fucus distichus monoicousUTRF-distichus_contig96362 482..723 +
1690886175.7272756-UTR-F-distichus_contig96362:481..7231690886175.7272756-UTR-F-distichus_contig96362:481..723Fucus distichus monoicousUTRF-distichus_contig96362 482..723 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931141.1093636-CDS-F-distichus_contig96362:172..4811622931141.1093636-CDS-F-distichus_contig96362:172..481Fucus distichus monoicousCDSF-distichus_contig96362 173..481 +
1690886175.7157845-CDS-F-distichus_contig96362:172..4811690886175.7157845-CDS-F-distichus_contig96362:172..481Fucus distichus monoicousCDSF-distichus_contig96362 173..481 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig96362.19091.1

>prot_F-distichus_contig96362.19091.1 ID=prot_F-distichus_contig96362.19091.1|Name=mRNA_F-distichus_contig96362.19091.1|organism=Fucus distichus monoicous|type=polypeptide|length=103bp
MPQPQAAAAAPTTVDDTDATYSSAAARGTDPRGEGKAGASSTPTYACKAF
SQLEVVVGRGSHSKTGVGRLKPVVLKYVTDRGFREEAVRGEQGGGVVSIS
LS*
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mRNA from alignment at F-distichus_contig96362:11..723+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig96362.19091.1 ID=mRNA_F-distichus_contig96362.19091.1|Name=mRNA_F-distichus_contig96362.19091.1|organism=Fucus distichus monoicous|type=mRNA|length=713bp|location=Sequence derived from alignment at F-distichus_contig96362:11..723+ (Fucus distichus monoicous)
AAGGTACTCGCTCTTCCCGAGCCATCAGAGTGCCCGATCCGGGGTCGGCT
GTCCGTAGACTTGCACCTGCTGCGAAAGGCCGAGGCTCTGAGTGTGCTCG
GGGCCGTTTTTGACGCGCTGCGTCGCAGGCGAGCCGGGGAAGCACCTCCA
TCACAGCCACCCATGCCCCAACCTCAGGCTGCTGCTGCTGCTCCTACCAC
CGTCGACGATACTGACGCAACCTACTCATCAGCTGCGGCGCGCGGGACGG
ATCCGAGGGGGGAGGGCAAAGCAGGGGCCAGCTCGACCCCTACCTACGCT
TGCAAGGCGTTTTCTCAGCTAGAGGTGGTCGTCGGAAGGGGGTCTCACAG
CAAAACAGGCGTAGGTCGACTCAAACCAGTCGTGCTGAAGTACGTGACCG
ACAGGGGTTTCAGGGAGGAGGCGGTGAGGGGAGAGCAGGGAGGGGGGGTG
GTATCGATTTCTCTGTCGTGAGCGCAGTCAATTCCGTGCGTACAGCACAC
GTGGTTTTCGCCTGGTGCTTTTCTGTTAAAAGCTTTGTACAGTAGTGTTT
GCCCCTTCCCGGCCTGATTTTAGCGAGTCAACAAATTTGTAGATAGCAAA
TTTGTAGATAGGTCTAGAGCCGATGGGTGTAAGTCTTACGCTAGTGGTAC
GGTGATTATGCAGCGGTTACCCCCCGGCGGCGGGAGGGGGGGGCGATGTG
TAGATATTGTTGA
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Coding sequence (CDS) from alignment at F-distichus_contig96362:11..723+

>mRNA_F-distichus_contig96362.19091.1 ID=mRNA_F-distichus_contig96362.19091.1|Name=mRNA_F-distichus_contig96362.19091.1|organism=Fucus distichus monoicous|type=CDS|length=618bp|location=Sequence derived from alignment at F-distichus_contig96362:11..723+ (Fucus distichus monoicous)
ATGCCCCAACCTCAGGCTGCTGCTGCTGCTCCTACCACCGTCGACGATAC
TGACGCAACCTACTCATCAGCTGCGGCGCGCGGGACGGATCCGAGGGGGG
AGGGCAAAGCAGGGGCCAGCTCGACCCCTACCTACGCTTGCAAGGCGTTT
TCTCAGCTAGAGGTGGTCGTCGGAAGGGGGTCTCACAGCAAAACAGGCGT
AGGTCGACTCAAACCAGTCGTGCTGAAGTACGTGACCGACAGGGGTTTCA
GGGAGGAGGCGGTGAGGGGAGAGCAGGGAGGGGGGGTGGTATCGATTTCT
CTGTCGTGAATGCCCCAACCTCAGGCTGCTGCTGCTGCTCCTACCACCGT
CGACGATACTGACGCAACCTACTCATCAGCTGCGGCGCGCGGGACGGATC
CGAGGGGGGAGGGCAAAGCAGGGGCCAGCTCGACCCCTACCTACGCTTGC
AAGGCGTTTTCTCAGCTAGAGGTGGTCGTCGGAAGGGGGTCTCACAGCAA
AACAGGCGTAGGTCGACTCAAACCAGTCGTGCTGAAGTACGTGACCGACA
GGGGTTTCAGGGAGGAGGCGGTGAGGGGAGAGCAGGGAGGGGGGGTGGTA
TCGATTTCTCTGTCGTGA
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