mRNA_F-distichus_contig10158.128.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig10158.128.1
Unique NamemRNA_F-distichus_contig10158.128.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig10158.128.1 vs. uniprot
Match: D8LTL2_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTL2_ECTSI)

HSP 1 Score: 56.6 bits (135), Expect = 5.630e-5
Identity = 67/197 (34.01%), Postives = 92/197 (46.70%), Query Frame = 1 
Query:  355 GKRRRISSASRPTTGKTL-KQSASEQVLGFAVGHVGFDAGKETRACVGPHPDIVNAAFLKRSRKQEAMDLVTKAALGAICPGADPLKRKWQPLPRQSPFRSHISEHLAKCAGKIIAGPSRLKRLP--DAAGGPDHDGAASFAHGATKAVACEN-SGLPSVAILAASRGGRLISSGIAVAGNHEGRGYSDKHTIRAAR 933
            GKR R  SA  P   ++L ++S SEQ L  A G V     K  R  V P       A LKR++ + A  +V K  +G    G + L+ +  PL                  G+ +A P     +P  D  G P    A + A GA ++   +   GLP VA+LA S GGRLI+SGI +AG+  G G++ K    AAR
Sbjct: 1484 GKRWRTKSAPWPAEDESLLERSVSEQGLPTA-GSVRVGTHKGMRGYVRPTAGSAEDAALKRTKSRGATGVVLKDTMGEES-GRNSLQGR--PL------------------GEWVAQPEGENAVPCIDGTGEP----ANTVARGAGESPMDKTIKGLPPVAVLAGSHGGRLIASGITIAGDRGGGGFNVKAARAAAR 1654
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig10158.128.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LTL2_ECTSI5.630e-534.01EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig10158contigF-distichus_contig10158:4702..7614 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons7
Model size1094
Cds size1092
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928931.5679712-CDS-F-distichus_contig10158:4701..48561622928931.5679712-CDS-F-distichus_contig10158:4701..4856Fucus distichus monoicousCDSF-distichus_contig10158 4702..4856 -
1690885071.7129602-CDS-F-distichus_contig10158:4701..48561690885071.7129602-CDS-F-distichus_contig10158:4701..4856Fucus distichus monoicousCDSF-distichus_contig10158 4702..4856 -
1622928931.5813062-CDS-F-distichus_contig10158:5170..54301622928931.5813062-CDS-F-distichus_contig10158:5170..5430Fucus distichus monoicousCDSF-distichus_contig10158 5171..5430 -
1690885071.7250035-CDS-F-distichus_contig10158:5170..54301690885071.7250035-CDS-F-distichus_contig10158:5170..5430Fucus distichus monoicousCDSF-distichus_contig10158 5171..5430 -
1622928931.5941591-CDS-F-distichus_contig10158:5588..56951622928931.5941591-CDS-F-distichus_contig10158:5588..5695Fucus distichus monoicousCDSF-distichus_contig10158 5589..5695 -
1690885071.7334313-CDS-F-distichus_contig10158:5588..56951690885071.7334313-CDS-F-distichus_contig10158:5588..5695Fucus distichus monoicousCDSF-distichus_contig10158 5589..5695 -
1622928931.6081407-CDS-F-distichus_contig10158:6021..61941622928931.6081407-CDS-F-distichus_contig10158:6021..6194Fucus distichus monoicousCDSF-distichus_contig10158 6022..6194 -
1690885071.7452643-CDS-F-distichus_contig10158:6021..61941690885071.7452643-CDS-F-distichus_contig10158:6021..6194Fucus distichus monoicousCDSF-distichus_contig10158 6022..6194 -
1622928931.6233242-CDS-F-distichus_contig10158:6532..66901622928931.6233242-CDS-F-distichus_contig10158:6532..6690Fucus distichus monoicousCDSF-distichus_contig10158 6533..6690 -
1690885071.7548873-CDS-F-distichus_contig10158:6532..66901690885071.7548873-CDS-F-distichus_contig10158:6532..6690Fucus distichus monoicousCDSF-distichus_contig10158 6533..6690 -
1622928931.6360474-CDS-F-distichus_contig10158:6919..71081622928931.6360474-CDS-F-distichus_contig10158:6919..7108Fucus distichus monoicousCDSF-distichus_contig10158 6920..7108 -
1690885071.764963-CDS-F-distichus_contig10158:6919..71081690885071.764963-CDS-F-distichus_contig10158:6919..7108Fucus distichus monoicousCDSF-distichus_contig10158 6920..7108 -
1622928931.6538801-CDS-F-distichus_contig10158:7564..76141622928931.6538801-CDS-F-distichus_contig10158:7564..7614Fucus distichus monoicousCDSF-distichus_contig10158 7565..7614 -
1690885071.7743452-CDS-F-distichus_contig10158:7564..76141690885071.7743452-CDS-F-distichus_contig10158:7564..7614Fucus distichus monoicousCDSF-distichus_contig10158 7565..7614 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig10158.128.1prot_F-distichus_contig10158.128.1Fucus distichus monoicouspolypeptideF-distichus_contig10158 4702..7614 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig10158.128.1

>prot_F-distichus_contig10158.128.1 ID=prot_F-distichus_contig10158.128.1|Name=mRNA_F-distichus_contig10158.128.1|organism=Fucus distichus monoicous|type=polypeptide|length=364bp
MSPGSSIAAEGDKLMKRFRTTKKEGISTSLTHDVRTGNVEDETKSGSNTN
IEGKSVLFEESENDAGGLENETTAWKNMVRDLRGLEERVDVITASRQQEM
GSMSARRACCVNKAKHVHGKRRRISSASRPTTGKTLKQSASEQVLGFAVG
HVGFDAGKETRACVGPHPDIVNAAFLKRSRKQEAMDLVTKAALGAICPGA
DPLKRKWQPLPRQSPFRSHISEHLAKCAGKIIAGPSRLKRLPDAAGGPDH
DGAASFAHGATKAVACENSGLPSVAILAASRGGRLISSGIAVAGNHEGRG
YSDKHTIRAAREGSFSNVQLGCGDIAVTEGSATGATAGECFEAATSKAAR
SSASGGRTRLSPPL
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mRNA from alignment at F-distichus_contig10158:4702..7614-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig10158.128.1 ID=mRNA_F-distichus_contig10158.128.1|Name=mRNA_F-distichus_contig10158.128.1|organism=Fucus distichus monoicous|type=mRNA|length=2913bp|location=Sequence derived from alignment at F-distichus_contig10158:4702..7614- (Fucus distichus monoicous)
ATGAGCCCTGGGAGTTCCATAGCTGCCGAGGGCGATAAGCTGATGAAAAG
GTGAGGATTGCAAGAACAGTACAGACAGAGTAAGCTCTTCCCTCGGAGAG
GCACAGGAGGTGACGACGAGACCCGTGCGCCGGAATCAAACAGGTGCGTT
GGTTGTATCAGTGTCCAACTTATCTTGTTCTCCGTCCAAATCTGAATGCG
GAGCTGCGCTAGTCTGGACTTAAGGTTCGAGGTGCGGTTAAGGCACTTAG
TCTGATACTTTCATCCCGGCGACTGTGGGACAAACTCTTCAGAGACACTA
CTCTATTCAATCGAAATTTTTGCGTGAAGAAGGGAACGCATACACGTCGC
TTGAACGTTGCCGTATCAATGATTGGCGCTTAACGGACACGCTAAGTTGC
AACGAACCATTTTCTGGTGTCCTCACCATAGACCTCAAGAAACTGCAGTT
TACTCGATGATCCCTTCGTATATCTATCTTCTTTTCGGCCACCTGTACTG
ATCCAGATTCCGCACAACGAAGAAAGAGGGAATAAGTACGTCTTTAACCC
ACGATGTGCGGACTGGGAATGTCGAAGATGAAACAAAATCTGGTTCTAAT
ACGAATATCGAGGGGAAATCGGTGTTATTTGAAGAATCGGAGAACGACGC
CGGGGGGCTAGAAAATGAGACAACTGCTTGGAAGAACATGGTCAGGTGAC
GACAACCAGCTCTGCTTATTTCTACATTCGGTACGTTGACCTCTACTCCA
TAAGGAACAACTTTGAGGTATAAGAAAAATATTATAAGCTGTAGAAACTC
CCGTTGAGGACATCACAATGAGATAATCTCAGGTGCGCCATGGCAAGGAT
GAACGAAAAGACAAGGACACAACTCATTTTCATGGGACCCTTCGGAAATT
CATACCCTTGGTCTTCTGTGGCAGAGATTTGCGTGGTTTAGAGGAGAGGG
TGGACGTCATCACCGCTTCGAGGCAACAAGAGATGGGAAGTATGAGCGCT
CGGAGAGCGTGCTGCGTGAACAAGGCGAAACATGTCCACGGAAAGAGGCG
GCGTATCAGCTCTGCTTCGAGGCCAACAACAGGTGCTGTCAAACATTTAA
GACATTTTTCATGAACGTGTGGAGGTCTACTTCGTGCTTCATGACGCACC
TCAGTCGTCATTTTCATTATAGAGGCCTTAGTGCAAGTTATAAACATTGA
GGAAACTCCTGCAGGGCAGGGATTAATCCGCTGACCATCACCTTCGCTTG
GTAATCCACGACCCAGTTTCCACAATAGCACTACGACTCCCATAACGCGA
CTACGACTAAGTCAGCCAACGTTGGATTCATGTTAGCAACAAGGTTCTCA
CTTACTCGTGTTGCTTTCCGCGCGACGTGTTGAAGCACTCCAAAACCACG
CGTGCTGATGTGCGCTCTAGGCAAAACGCTGAAGCAGTCTGCCTCGGAGC
AAGTCCTTGGATTTGCCGTAGGTCATGTCGGTTTTGATGCCGGGAAGGAA
ACGCGGGCATGCGTTGGGCCTCATCCGGACATTGTCAACGCGGCGTTTCT
TAAGCGTTCAAGAAAACAGGAAGCCATGGACTTGGTGACCAAGGTGCGCG
TCTCCAAAATCAGAGGTTGCAATCGATGAAGCGGTCTGCATGAAAGAATT
CCATGTGAAAGGGAGAGACGACTGCGCCACCGTACGGAGGTGGATTAGCT
CTGTCTGGATTTCACGCTTTCTCGTGGCCATCTTGTTGAAGGGTTCAATG
GCATTCGCCAAATACACGGCAGTTTCTAGCAACTGTATCGCACGGCAAAG
GAAACCCCTATAGGGGTGATATGTATCGACAGTGCGCCGCTCTTACCACC
TTTTCGATCGAACACAATTAGAAGTGTACCTCCTGAGTCGCTTTTGGGCT
TGCTATCGCTTGCGTTCAGGCCGCTTTAGGGGCGATTTGTCCTGGAGCAG
ACCCCCTCAAGCGAAAATGGCAGCCGCTGCCCCGACAGAGCCCTTTCCGC
TCCCACATTTCCGAGCATCTCGCAAAGTGGGTCGTCTTATATTATTTTCC
AATGCATCATGTCTCGCCATACCCCGTTGTGCCACTCCTATTTATCGCGC
AAAGAATGTGATACAACTACTATGTGTTTGTTCTCGTAACTGATACGAGT
TTGAACGCTTGAACCTATACGTGAACGTGAAAAGGTGCGCGGGAAAAATT
ATTGCGGGCCCCTCGCGGCTGAAAAGGTTGCCTGACGCAGCGGGGGGGCC
TGACCACGACGGTGCTGCTTCTTTTGCTCATGGTGCCACGAAAGCGGTTG
CATGCGAGAATAGCGGGCTCCCTTCTGTGGCCATCTTGGCCGCTTCGCGG
GGGGGGCGCCTCATCTCCAGTGGAATTGCGGTCGCTGGCAATCATGAAGG
CAGGGGCTACAGCGACAAGCACACTATAAGAGCAGCACGAGAAGGTCTGG
AGAAAGCATGGGCAGAGCAAACCATTCCTAGAGAGAACGTGACCATGAAT
AATATGGAAAGGAGTGGGCCAGCGCATTCTTGGACAGTAATGCGGCCTCG
AAATACACGCAAACGTCGAGAGCCCGTTTATCAGCGGGCCGGGGGCATTC
TGCTTTGGGGACTCAATCAAACAAATGAAGCCGTTCGCTCGGCTCTCCGG
GGCAGCCTAAACTAACGTCGTTCGCAATGCGATGAAGAGAAATGCATGTC
AACGGCGTTGGCAACCATAGTTTCCCTTGTACGTTGGCATCCTTCGCTCC
CGGTACAGGATCGTTTTCAAACGTTCAGTTGGGATGTGGGGATATCGCCG
TTACAGAGGGGTCAGCAACGGGGGCGACTGCGGGTGAGTGTTTTGAAGCG
GCGACATCAAAAGCAGCACGGAGTTCGGCCTCGGGTGGGAGGACGCGCCT
GTCTCCACCGTTG
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Coding sequence (CDS) from alignment at F-distichus_contig10158:4702..7614-

>mRNA_F-distichus_contig10158.128.1 ID=mRNA_F-distichus_contig10158.128.1|Name=mRNA_F-distichus_contig10158.128.1|organism=Fucus distichus monoicous|type=CDS|length=2184bp|location=Sequence derived from alignment at F-distichus_contig10158:4702..7614- (Fucus distichus monoicous)
ATGAGCCCTGGGAGTTCCATAGCTGCCGAGGGCGATAAGCTGATGAAAAG
ATGAGCCCTGGGAGTTCCATAGCTGCCGAGGGCGATAAGCTGATGAAAAG
ATTCCGCACAACGAAGAAAGAGGGAATAAGTACGTCTTTAACCCACGATG
TGCGGACTGGGAATGTCGAAGATGAAACAAAATCTGGTTCTAATACGAAT
ATCGAGGGGAAATCGGTGTTATTTGAAGAATCGGAGAACGACGCCGGGGG
GCTAGAAAATGAGACAACTGCTTGGAAGAACATGGTCAGATTCCGCACAA
CGAAGAAAGAGGGAATAAGTACGTCTTTAACCCACGATGTGCGGACTGGG
AATGTCGAAGATGAAACAAAATCTGGTTCTAATACGAATATCGAGGGGAA
ATCGGTGTTATTTGAAGAATCGGAGAACGACGCCGGGGGGCTAGAAAATG
AGACAACTGCTTGGAAGAACATGGTCAGAGATTTGCGTGGTTTAGAGGAG
AGGGTGGACGTCATCACCGCTTCGAGGCAACAAGAGATGGGAAGTATGAG
CGCTCGGAGAGCGTGCTGCGTGAACAAGGCGAAACATGTCCACGGAAAGA
GGCGGCGTATCAGCTCTGCTTCGAGGCCAACAACAGAGATTTGCGTGGTT
TAGAGGAGAGGGTGGACGTCATCACCGCTTCGAGGCAACAAGAGATGGGA
AGTATGAGCGCTCGGAGAGCGTGCTGCGTGAACAAGGCGAAACATGTCCA
CGGAAAGAGGCGGCGTATCAGCTCTGCTTCGAGGCCAACAACAGGCAAAA
CGCTGAAGCAGTCTGCCTCGGAGCAAGTCCTTGGATTTGCCGTAGGTCAT
GTCGGTTTTGATGCCGGGAAGGAAACGCGGGCATGCGTTGGGCCTCATCC
GGACATTGTCAACGCGGCGTTTCTTAAGCGTTCAAGAAAACAGGAAGCCA
TGGACTTGGTGACCAAGGCAAAACGCTGAAGCAGTCTGCCTCGGAGCAAG
TCCTTGGATTTGCCGTAGGTCATGTCGGTTTTGATGCCGGGAAGGAAACG
CGGGCATGCGTTGGGCCTCATCCGGACATTGTCAACGCGGCGTTTCTTAA
GCGTTCAAGAAAACAGGAAGCCATGGACTTGGTGACCAAGGCCGCTTTAG
GGGCGATTTGTCCTGGAGCAGACCCCCTCAAGCGAAAATGGCAGCCGCTG
CCCCGACAGAGCCCTTTCCGCTCCCACATTTCCGAGCATCTCGCAAAGCC
GCTTTAGGGGCGATTTGTCCTGGAGCAGACCCCCTCAAGCGAAAATGGCA
GCCGCTGCCCCGACAGAGCCCTTTCCGCTCCCACATTTCCGAGCATCTCG
CAAAGTGCGCGGGAAAAATTATTGCGGGCCCCTCGCGGCTGAAAAGGTTG
CCTGACGCAGCGGGGGGGCCTGACCACGACGGTGCTGCTTCTTTTGCTCA
TGGTGCCACGAAAGCGGTTGCATGCGAGAATAGCGGGCTCCCTTCTGTGG
CCATCTTGGCCGCTTCGCGGGGGGGGCGCCTCATCTCCAGTGGAATTGCG
GTCGCTGGCAATCATGAAGGCAGGGGCTACAGCGACAAGCACACTATAAG
AGCAGCACGAGAAGGTGCGCGGGAAAAATTATTGCGGGCCCCTCGCGGCT
GAAAAGGTTGCCTGACGCAGCGGGGGGGCCTGACCACGACGGTGCTGCTT
CTTTTGCTCATGGTGCCACGAAAGCGGTTGCATGCGAGAATAGCGGGCTC
CCTTCTGTGGCCATCTTGGCCGCTTCGCGGGGGGGGCGCCTCATCTCCAG
TGGAATTGCGGTCGCTGGCAATCATGAAGGCAGGGGCTACAGCGACAAGC
ACACTATAAGAGCAGCACGAGAAGGATCGTTTTCAAACGTTCAGTTGGGA
TGTGGGGATATCGCCGTTACAGAGGGGTCAGCAACGGGGGCGACTGCGGG
TGAGTGTTTTGAAGCGGCGACATCAAAAGCAGCACGGAGTTCGGCCTCGG
GTGGGAGGACGCGCCTGTCTCCACCGTTGGATCGTTTTCAAACGTTCAGT
TGGGATGTGGGGATATCGCCGTTACAGAGGGGTCAGCAACGGGGGCGACT
GCGGGTGAGTGTTTTGAAGCGGCGACATCAAAAGCAGCACGGAGTTCGGC
CTCGGGTGGGAGGACGCGCCTGTCTCCACCGTTG
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