mRNA_F-distichus_contig107091.602.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig107091.602.1
Unique NamemRNA_F-distichus_contig107091.602.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig107091.602.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig107091contigF-distichus_contig107091:675..1666 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size994
Cds size981
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928998.2332761-UTR-F-distichus_contig107091:674..6851622928998.2332761-UTR-F-distichus_contig107091:674..685Fucus distichus monoicousUTRF-distichus_contig107091 675..685 +
1690885099.3685257-UTR-F-distichus_contig107091:674..6851690885099.3685257-UTR-F-distichus_contig107091:674..685Fucus distichus monoicousUTRF-distichus_contig107091 675..685 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928998.2508514-CDS-F-distichus_contig107091:685..16661622928998.2508514-CDS-F-distichus_contig107091:685..1666Fucus distichus monoicousCDSF-distichus_contig107091 686..1666 +
1690885099.3776228-CDS-F-distichus_contig107091:685..16661690885099.3776228-CDS-F-distichus_contig107091:685..1666Fucus distichus monoicousCDSF-distichus_contig107091 686..1666 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig107091.602.1prot_F-distichus_contig107091.602.1Fucus distichus monoicouspolypeptideF-distichus_contig107091 686..1666 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig107091.602.1

>prot_F-distichus_contig107091.602.1 ID=prot_F-distichus_contig107091.602.1|Name=mRNA_F-distichus_contig107091.602.1|organism=Fucus distichus monoicous|type=polypeptide|length=327bp
MAVTCIQRTVRCRQARDRAAVLWRRRDDDIRRKREAAECIQRQMRSRQAV
KRVNAARQQRDENMRRMGEEEEARRHAVAAECIQYAVRCHQAVGRISELR
RRKDMRQRMELERQQDRAASCIQRAVWCRQARDRVTTLRRRCDDDILRRN
WEEAELNQRYIIETKAAECIQRQVRSRRAIMQVATVRQQRDADMRRVQEE
EGERRREVAIECVQRAVTLASEQLWQQEIIRKVELVRQQGTAVSCIQRAV
RCRKARDHVATLRRRRDDGIRLKREETELERRWKVDTEAAKCIQRQVHSR
QAIRRVTALRQQRDEGSRRMHEEEGER
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mRNA from alignment at F-distichus_contig107091:675..1666+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig107091.602.1 ID=mRNA_F-distichus_contig107091.602.1|Name=mRNA_F-distichus_contig107091.602.1|organism=Fucus distichus monoicous|type=mRNA|length=992bp|location=Sequence derived from alignment at F-distichus_contig107091:675..1666+ (Fucus distichus monoicous)
AGCAGGAGGGCATGGCGGTGACGTGCATACAGCGCACGGTACGGTGTCGA
CAGGCCCGCGACCGCGCGGCCGTCTTATGGCGACGGCGTGATGACGACAT
ACGGCGAAAGCGAGAGGCCGCCGAGTGTATCCAGCGTCAGATGCGCAGTC
GGCAGGCCGTCAAGCGCGTTAACGCCGCCAGGCAGCAACGGGATGAGAAT
ATGCGGCGCATGGGAGAGGAAGAAGAAGCGCGACGACATGCAGTGGCCGC
CGAGTGCATCCAGTACGCCGTGAGGTGTCATCAGGCGGTCGGGCGGATCT
CCGAGCTACGACGACGGAAAGATATGAGGCAGAGGATGGAGCTAGAACGT
CAGCAGGACAGGGCAGCGTCGTGTATCCAGCGCGCCGTGTGGTGTCGACA
AGCCCGCGACCGCGTGACCACCTTACGCCGACGATGCGATGATGATATAC
TACGGCGGAATTGGGAGGAGGCCGAGCTGAACCAGAGATATATCATAGAG
ACAAAGGCCGCCGAGTGTATCCAGCGCCAGGTGCGCAGTCGTCGGGCCAT
CATGCAGGTCGCCACCGTGAGGCAGCAAAGAGACGCGGACATGCGGCGTG
TACAAGAAGAGGAAGGAGAGCGACGACGAGAAGTAGCCATCGAGTGCGTC
CAGCGCGCCGTCACTTTGGCCTCCGAGCAACTGTGGCAGCAGGAAATAAT
CCGGAAGGTAGAACTAGTGCGACAACAGGGCACGGCAGTGTCGTGTATCC
AGCGCGCCGTACGGTGTCGAAAAGCCCGCGACCACGTGGCCACCTTACGC
CGACGGCGTGATGACGGCATACGGCTAAAGCGGGAGGAGACCGAGCTGGA
ACGAAGATGGAAGGTAGACACAGAAGCTGCCAAATGCATCCAGCGTCAGG
TGCACAGTCGTCAGGCCATCAGGCGGGTCACCGCCCTGAGGCAGCAAAGA
GACGAAGGTTCGCGGCGCATGCACGAGGAGGAAGGAGAGCGA
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Coding sequence (CDS) from alignment at F-distichus_contig107091:675..1666+

>mRNA_F-distichus_contig107091.602.1 ID=mRNA_F-distichus_contig107091.602.1|Name=mRNA_F-distichus_contig107091.602.1|organism=Fucus distichus monoicous|type=CDS|length=1962bp|location=Sequence derived from alignment at F-distichus_contig107091:675..1666+ (Fucus distichus monoicous)
ATGGCGGTGACGTGCATACAGCGCACGGTACGGTGTCGACAGGCCCGCGA
CCGCGCGGCCGTCTTATGGCGACGGCGTGATGACGACATACGGCGAAAGC
GAGAGGCCGCCGAGTGTATCCAGCGTCAGATGCGCAGTCGGCAGGCCGTC
AAGCGCGTTAACGCCGCCAGGCAGCAACGGGATGAGAATATGCGGCGCAT
GGGAGAGGAAGAAGAAGCGCGACGACATGCAGTGGCCGCCGAGTGCATCC
AGTACGCCGTGAGGTGTCATCAGGCGGTCGGGCGGATCTCCGAGCTACGA
CGACGGAAAGATATGAGGCAGAGGATGGAGCTAGAACGTCAGCAGGACAG
GGCAGCGTCGTGTATCCAGCGCGCCGTGTGGTGTCGACAAGCCCGCGACC
GCGTGACCACCTTACGCCGACGATGCGATGATGATATACTACGGCGGAAT
TGGGAGGAGGCCGAGCTGAACCAGAGATATATCATAGAGACAAAGGCCGC
CGAGTGTATCCAGCGCCAGGTGCGCAGTCGTCGGGCCATCATGCAGGTCG
CCACCGTGAGGCAGCAAAGAGACGCGGACATGCGGCGTGTACAAGAAGAG
GAAGGAGAGCGACGACGAGAAGTAGCCATCGAGTGCGTCCAGCGCGCCGT
CACTTTGGCCTCCGAGCAACTGTGGCAGCAGGAAATAATCCGGAAGGTAG
AACTAGTGCGACAACAGGGCACGGCAGTGTCGTGTATCCAGCGCGCCGTA
CGGTGTCGAAAAGCCCGCGACCACGTGGCCACCTTACGCCGACGGCGTGA
TGACGGCATACGGCTAAAGCGGGAGGAGACCGAGCTGGAACGAAGATGGA
AGGTAGACACAGAAGCTGCCAAATGCATCCAGCGTCAGGTGCACAGTCGT
CAGGCCATCAGGCGGGTCACCGCCCTGAGGCAGCAAAGAGACGAAGGTTC
GCGGCGCATGCACGAGGAGGAAGGAGAGCGAATGGCGGTGACGTGCATAC
AGCGCACGGTACGGTGTCGACAGGCCCGCGACCGCGCGGCCGTCTTATGG
CGACGGCGTGATGACGACATACGGCGAAAGCGAGAGGCCGCCGAGTGTAT
CCAGCGTCAGATGCGCAGTCGGCAGGCCGTCAAGCGCGTTAACGCCGCCA
GGCAGCAACGGGATGAGAATATGCGGCGCATGGGAGAGGAAGAAGAAGCG
CGACGACATGCAGTGGCCGCCGAGTGCATCCAGTACGCCGTGAGGTGTCA
TCAGGCGGTCGGGCGGATCTCCGAGCTACGACGACGGAAAGATATGAGGC
AGAGGATGGAGCTAGAACGTCAGCAGGACAGGGCAGCGTCGTGTATCCAG
CGCGCCGTGTGGTGTCGACAAGCCCGCGACCGCGTGACCACCTTACGCCG
ACGATGCGATGATGATATACTACGGCGGAATTGGGAGGAGGCCGAGCTGA
ACCAGAGATATATCATAGAGACAAAGGCCGCCGAGTGTATCCAGCGCCAG
GTGCGCAGTCGTCGGGCCATCATGCAGGTCGCCACCGTGAGGCAGCAAAG
AGACGCGGACATGCGGCGTGTACAAGAAGAGGAAGGAGAGCGACGACGAG
AAGTAGCCATCGAGTGCGTCCAGCGCGCCGTCACTTTGGCCTCCGAGCAA
CTGTGGCAGCAGGAAATAATCCGGAAGGTAGAACTAGTGCGACAACAGGG
CACGGCAGTGTCGTGTATCCAGCGCGCCGTACGGTGTCGAAAAGCCCGCG
ACCACGTGGCCACCTTACGCCGACGGCGTGATGACGGCATACGGCTAAAG
CGGGAGGAGACCGAGCTGGAACGAAGATGGAAGGTAGACACAGAAGCTGC
CAAATGCATCCAGCGTCAGGTGCACAGTCGTCAGGCCATCAGGCGGGTCA
CCGCCCTGAGGCAGCAAAGAGACGAAGGTTCGCGGCGCATGCACGAGGAG
GAAGGAGAGCGA
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