mRNA_F-distichus_contig106594.560.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig106594.560.1
Unique NamemRNA_F-distichus_contig106594.560.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig106594.560.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig106594contigF-distichus_contig106594:578..1193 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size309
Cds size180
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig106594.560.1prot_F-distichus_contig106594.560.1Fucus distichus monoicouspolypeptideF-distichus_contig106594 615..1101 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928992.727185-UTR-F-distichus_contig106594:577..6141622928992.727185-UTR-F-distichus_contig106594:577..614Fucus distichus monoicousUTRF-distichus_contig106594 578..614 -
1690885096.67234-UTR-F-distichus_contig106594:577..6141690885096.67234-UTR-F-distichus_contig106594:577..614Fucus distichus monoicousUTRF-distichus_contig106594 578..614 -
1622928992.8804035-UTR-F-distichus_contig106594:1101..11931622928992.8804035-UTR-F-distichus_contig106594:1101..1193Fucus distichus monoicousUTRF-distichus_contig106594 1102..1193 -
1690885096.7030127-UTR-F-distichus_contig106594:1101..11931690885096.7030127-UTR-F-distichus_contig106594:1101..1193Fucus distichus monoicousUTRF-distichus_contig106594 1102..1193 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928992.8559215-CDS-F-distichus_contig106594:614..7261622928992.8559215-CDS-F-distichus_contig106594:614..726Fucus distichus monoicousCDSF-distichus_contig106594 615..726 -
1690885096.6817205-CDS-F-distichus_contig106594:614..7261690885096.6817205-CDS-F-distichus_contig106594:614..726Fucus distichus monoicousCDSF-distichus_contig106594 615..726 -
1622928992.8696287-CDS-F-distichus_contig106594:1033..11011622928992.8696287-CDS-F-distichus_contig106594:1033..1101Fucus distichus monoicousCDSF-distichus_contig106594 1034..1101 -
1690885096.689704-CDS-F-distichus_contig106594:1033..11011690885096.689704-CDS-F-distichus_contig106594:1033..1101Fucus distichus monoicousCDSF-distichus_contig106594 1034..1101 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig106594.560.1

>prot_F-distichus_contig106594.560.1 ID=prot_F-distichus_contig106594.560.1|Name=mRNA_F-distichus_contig106594.560.1|organism=Fucus distichus monoicous|type=polypeptide|length=60bp
MADQRSAIKAREKSKQRSDTQYRPSATSKNAPPRTKSTARKPMENEAITD
DPTFLLKED*
back to top

mRNA from alignment at F-distichus_contig106594:578..1193-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig106594.560.1 ID=mRNA_F-distichus_contig106594.560.1|Name=mRNA_F-distichus_contig106594.560.1|organism=Fucus distichus monoicous|type=mRNA|length=616bp|location=Sequence derived from alignment at F-distichus_contig106594:578..1193- (Fucus distichus monoicous)
AGATCATCACCCATGGTGTCGGAGTCTTTCCCACGATCCGTGGTGTCGCC
GTATCCAAGTTGGCCGTAAGCATTCGCGCCGAAGCACTTGAGATGGCGGA
TCAAAGGTCGGCCATCAAAGCCAGGGAAAAATCGAAGCAACGTTCAGACA
CGCAATACAGGTAACAAGACGAGTGAGTAACGTCTGCCCCGATCTAGAGC
TCTACTATGAGAGATGCTATATACTTGTAAACTATATGTTTGTTCCGTTC
GCTTACTAGGTAGCAAAGCTCTACAACAACAGCCGCCGCACATTGCAGAC
ACACACGGTTTAGAATTCCTTTGGTGTTTGCCTCCCACGTTCGACAAGAC
AAGTGCACCACGGTCTCTTGACAGCTGACGACGTGCGAGCGAGAATCACG
AGGTCAGTTTCACCTTAACAGATCCGTCGTCTAATAAAGCACATGCGTGG
TTGTCTCCCACCGCAAGGCCGTCTGCTACGTCGAAGAACGCCCCACCGAG
AACCAAGAGCACGGCCCGCAAGCCCATGGAGAATGAAGCCATCACTGACG
ACCCCACCTTCCTGCTAAAGGAGGATTAGATGGGGCCCGTCGGTCAACCC
ACGAGCGATGTGATCG
back to top

Coding sequence (CDS) from alignment at F-distichus_contig106594:578..1193-

>mRNA_F-distichus_contig106594.560.1 ID=mRNA_F-distichus_contig106594.560.1|Name=mRNA_F-distichus_contig106594.560.1|organism=Fucus distichus monoicous|type=CDS|length=360bp|location=Sequence derived from alignment at F-distichus_contig106594:578..1193- (Fucus distichus monoicous)
ATGGCGGATCAAAGGTCGGCCATCAAAGCCAGGGAAAAATCGAAGCAACG
TTCAGACACGCAATACAGATGGCGGATCAAAGGTCGGCCATCAAAGCCAG
GGAAAAATCGAAGCAACGTTCAGACACGCAATACAGGCCGTCTGCTACGT
CGAAGAACGCCCCACCGAGAACCAAGAGCACGGCCCGCAAGCCCATGGAG
AATGAAGCCATCACTGACGACCCCACCTTCCTGCTAAAGGAGGATTAGGC
CGTCTGCTACGTCGAAGAACGCCCCACCGAGAACCAAGAGCACGGCCCGC
AAGCCCATGGAGAATGAAGCCATCACTGACGACCCCACCTTCCTGCTAAA
GGAGGATTAG
back to top