mRNA_F-distichus_contig106581.558.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig106581.558.1
Unique NamemRNA_F-distichus_contig106581.558.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig106581.558.1 vs. uniprot
Match: D8LL70_ECTSI (DUF4524 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL70_ECTSI)

HSP 1 Score: 185 bits (470), Expect = 2.290e-49
Identity = 156/374 (41.71%), Postives = 183/374 (48.93%), Query Frame = 1 
Query:    1 LTDFCRRDLLPQLAAVANFRNAHSSRPYLSRRLHVD-----KSFQGTS-----------TPPPSRRLSRLALWPE------RPPSSGNSKRCTVH-ADGRVVVRAAGGNARLVLSSSRNVCEVDFAAQVPGGRRGAHAGRVWVNRQFLVV-RAAPP----PAEFAHALGVALRAFPAR--------------------GGEEDGGNRPAAV---------GDEDEVVASKLPVPLGRPDRARWDTVQTSPTFGSSTGAWPSAFDHHRPLG-----EWTD----------VTYSSAASSGGGPANVTPEQRLLAADAMKLAKGTGFAGPLAAVVESFAGCIYRVVDDGGGFGAGSISGERGAGRGEQGVTVHVRA 906
            L+DFCRRDL+P +AAV++FRNAHS RPYLS+R+H        S  GT            TP      SR+A WP       R  +S +S    V  ADG V VRAAGGNARL LS+S  V EVD+A  +P G   A  GRVWV R+FLV   AAPP    P EF+HAL VA+R   +                     G    G   PAA          G E  +VA +LP P  RPD A WDTVQ  P+  S         D   PLG      W D           T S++A++ GG        RLL+ D MKLA G G+AG LAAVVES   C YR+V  GGG         RGAG G  GV V V A
Sbjct:   61 LSDFCRRDLIPHVAAVSSFRNAHSPRPYLSQRIHATLEQETHSSNGTXXXXXXXXXXXXTP------SRIAHWPAAAEPTCRHSTSNSSSTFVVRGADGSVEVRAAGGNARLALSASGTVAEVDYAVALPPGPGAAGGGRVWVTRRFLVGGSAAPPFDDVPPEFSHALSVAVRESRSAXXXXXXXXXXXXXXXXXXXXGDVSLGRVSPAAAAAGGTVSGKGGERGLVAVELPRPEERPDHASWDTVQQGPSLDSHR-------DPLAPLGYYGDRRWCDGAAPTFATRAATASASAAAAGG--------RLLSVDVMKLAGGQGYAGELAAVVESTGCCTYRIVVGGGGH-------HRGAGEGGVGVHVVVHA 406
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BLAST of mRNA_F-distichus_contig106581.558.1 vs. uniprot
Match: A0A6H5KVD6_9PHAE (DUF4524 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVD6_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 2.500e-15
Identity = 56/126 (44.44%), Postives = 71/126 (56.35%), Query Frame = 1 
Query:    1 LTDFCRRDLLPQLAAVANFRNAHSSRPYLSRRLH--VDKSFQGTSTPPPSRRL--------SRLALWPERPPSSGN-------SKRCTVHADGRVVVRAAGGNARLVLSSSRNVCEVDFAAQVPGG 327
            L+DFCRRDL+P +AA ++FRNAHS RPYLS+R+H  +++    +S                SR+A WP               S      ADGRV VRAAGGNARL LS+S  V EVD+A  +P G
Sbjct:   81 LSDFCRRDLIPHVAAASSFRNAHSPRPYLSQRIHATLEQGPHNSSXXXXXXXXXXXXXXXPSRIAHWPAAAEPXXXXXXXXXXSTFVVRGADGRVEVRAAGGNARLTLSASGTVAEVDYAVALPPG 206
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig106581.558.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LL70_ECTSI2.290e-4941.71DUF4524 domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5KVD6_9PHAE2.500e-1544.44DUF4524 domain-containing protein n=1 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig106581contigF-distichus_contig106581:2..1653 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDomain of unknown function DUF4524
Ec32 orthologEc-24_002720.1
Exons3
Model size906
Cds size906
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig106581.558.1prot_F-distichus_contig106581.558.1Fucus distichus monoicouspolypeptideF-distichus_contig106581 2..1653 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928992.5953746-CDS-F-distichus_contig106581:1..3221622928992.5953746-CDS-F-distichus_contig106581:1..322Fucus distichus monoicousCDSF-distichus_contig106581 2..322 +
1690885096.562958-CDS-F-distichus_contig106581:1..3221690885096.562958-CDS-F-distichus_contig106581:1..322Fucus distichus monoicousCDSF-distichus_contig106581 2..322 +
1622928992.6129177-CDS-F-distichus_contig106581:427..6601622928992.6129177-CDS-F-distichus_contig106581:427..660Fucus distichus monoicousCDSF-distichus_contig106581 428..660 +
1690885096.6353292-CDS-F-distichus_contig106581:427..6601690885096.6353292-CDS-F-distichus_contig106581:427..660Fucus distichus monoicousCDSF-distichus_contig106581 428..660 +
1622928992.6275275-CDS-F-distichus_contig106581:1301..16531622928992.6275275-CDS-F-distichus_contig106581:1301..1653Fucus distichus monoicousCDSF-distichus_contig106581 1302..1653 +
1690885096.6446579-CDS-F-distichus_contig106581:1301..16531690885096.6446579-CDS-F-distichus_contig106581:1301..1653Fucus distichus monoicousCDSF-distichus_contig106581 1302..1653 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig106581.558.1

>prot_F-distichus_contig106581.558.1 ID=prot_F-distichus_contig106581.558.1|Name=mRNA_F-distichus_contig106581.558.1|organism=Fucus distichus monoicous|type=polypeptide|length=302bp
LTDFCRRDLLPQLAAVANFRNAHSSRPYLSRRLHVDKSFQGTSTPPPSRR
LSRLALWPERPPSSGNSKRCTVHADGRVVVRAAGGNARLVLSSSRNVCEV
DFAAQVPGGRRGAHAGRVWVNRQFLVVRAAPPPAEFAHALGVALRAFPAR
GGEEDGGNRPAAVGDEDEVVASKLPVPLGRPDRARWDTVQTSPTFGSSTG
AWPSAFDHHRPLGEWTDVTYSSAASSGGGPANVTPEQRLLAADAMKLAKG
TGFAGPLAAVVESFAGCIYRVVDDGGGFGAGSISGERGAGRGEQGVTVHV
RA
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mRNA from alignment at F-distichus_contig106581:2..1653+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig106581.558.1 ID=mRNA_F-distichus_contig106581.558.1|Name=mRNA_F-distichus_contig106581.558.1|organism=Fucus distichus monoicous|type=mRNA|length=1652bp|location=Sequence derived from alignment at F-distichus_contig106581:2..1653+ (Fucus distichus monoicous)
CTTACCGATTTCTGCCGGCGTGATCTCCTCCCCCAGCTGGCCGCAGTAGC
CAACTTCCGGAACGCCCACAGCTCCAGACCCTACCTCTCGCGACGACTGC
ACGTCGACAAGAGCTTCCAAGGAACCTCAACGCCTCCTCCATCCCGGAGG
CTGTCGCGGTTGGCGCTCTGGCCGGAGAGGCCCCCGTCGTCGGGGAACTC
GAAGCGTTGCACCGTCCACGCGGACGGGAGAGTCGTGGTGCGCGCTGCCG
GAGGCAACGCGAGGCTTGTGCTGTCGAGCTCCCGGAACGTATGCGAGGTT
GACTTTGCCGCGCAGGTTCCCGTGACGTCGTCATTTTTGCCGGAGAAACC
GAGAGACGGCGACGAAGAGAGGGGCGATTGGTGCGGTGGAAGGCCGGGTG
ATGACGGAGCAACGGGGTGCGAGCAGGGAGGCCGACGGGGCGCGCACGCC
GGCAGGGTGTGGGTGAACAGGCAGTTCTTGGTGGTGCGAGCGGCGCCGCC
ACCGGCGGAATTTGCTCACGCGCTTGGCGTGGCACTGAGGGCGTTCCCTG
CTCGCGGCGGGGAGGAAGATGGGGGAAATCGGCCCGCGGCGGTGGGGGAT
GAGGACGAGGTGGTGGCGTCGAAGCTCCCGGTGCCGTTGGGAAGGCCCGA
TCGCGCTAGGTGAAATTTCGAAGACGTGTGGTCATTAATTGTGTGAAGGT
TCACCGTTGTCTTGCCACCGTGGGTGGTGGTGATTTCTGTGGTGTTCTCC
TGTGTGTGTTTAAAGAAAAATCATAACAGCACCTAGACCTTCTGAGCATC
CCCCGGTTAGGGGGGAAAAATGTCAAAACGTTTAGGTGGGATCAAAGGCT
GCAATTACAAGACCTCTTGTTATTTATTAAATTGCGCATAACGGTGCAAT
CCGGTCCTGCCATCCTAGTCATTCTATGCCACAGCCACATTGGTCCTCCC
AAGTCGGAATCAATGATACTTTTTACGAAAACCTCTGATCCGACGCGACA
AAGGGGACACACTCTGTGTATGTGTGTGTGTCTGTGTGTGTATTTATTAA
ATTGCATATAAACGTGCAAACCGGCCCTGCCATCCAATATGACTCTTTTT
TATCCGTTTGTCTCGTCCTACCTTGGACTTGACTGGATCAACCGGTCGAC
TTCGTCTTCCGCGAGCCTCCCGATAATATTCAATCACCGCAACGTGCTAA
TGAAAAGCGTATACGAAACGAACTCTGTCCAAGACCATGCCATGCCCCAC
GCCGATCGCGCATTCTCACCCACCGTGGCACCGCCGCAACACAAACTCAG
ATGGGACACCGTTCAGACTTCGCCAACCTTCGGGAGCAGCACGGGTGCTT
GGCCCTCGGCGTTCGACCACCATCGCCCGTTGGGGGAGTGGACGGATGTG
ACCTACTCTTCGGCCGCATCATCCGGGGGGGGTCCCGCCAACGTAACCCC
GGAACAAAGGCTTCTCGCGGCGGACGCTATGAAGCTTGCGAAGGGGACCG
GCTTCGCAGGACCGCTAGCAGCCGTGGTGGAGTCTTTCGCGGGATGCATC
TATAGGGTCGTGGATGATGGGGGAGGTTTCGGGGCGGGTAGCATCAGCGG
AGAGCGGGGGGCGGGAAGGGGAGAGCAAGGCGTCACCGTTCACGTAAGGG
CT
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Coding sequence (CDS) from alignment at F-distichus_contig106581:2..1653+

>mRNA_F-distichus_contig106581.558.1 ID=mRNA_F-distichus_contig106581.558.1|Name=mRNA_F-distichus_contig106581.558.1|organism=Fucus distichus monoicous|type=CDS|length=1812bp|location=Sequence derived from alignment at F-distichus_contig106581:2..1653+ (Fucus distichus monoicous)
CTTACCGATTTCTGCCGGCGTGATCTCCTCCCCCAGCTGGCCGCAGTAGC
CAACTTCCGGAACGCCCACAGCTCCAGACCCTACCTCTCGCGACGACTGC
ACGTCGACAAGAGCTTCCAAGGAACCTCAACGCCTCCTCCATCCCGGAGG
CTGTCGCGGTTGGCGCTCTGGCCGGAGAGGCCCCCGTCGTCGGGGAACTC
GAAGCGTTGCACCGTCCACGCGGACGGGAGAGTCGTGGTGCGCGCTGCCG
GAGGCAACGCGAGGCTTGTGCTGTCGAGCTCCCGGAACGTATGCGAGGTT
GACTTTGCCGCGCAGGTTCCCCTTACCGATTTCTGCCGGCGTGATCTCCT
CCCCCAGCTGGCCGCAGTAGCCAACTTCCGGAACGCCCACAGCTCCAGAC
CCTACCTCTCGCGACGACTGCACGTCGACAAGAGCTTCCAAGGAACCTCA
ACGCCTCCTCCATCCCGGAGGCTGTCGCGGTTGGCGCTCTGGCCGGAGAG
GCCCCCGTCGTCGGGGAACTCGAAGCGTTGCACCGTCCACGCGGACGGGA
GAGTCGTGGTGCGCGCTGCCGGAGGCAACGCGAGGCTTGTGCTGTCGAGC
TCCCGGAACGTATGCGAGGTTGACTTTGCCGCGCAGGTTCCCGGAGGCCG
ACGGGGCGCGCACGCCGGCAGGGTGTGGGTGAACAGGCAGTTCTTGGTGG
TGCGAGCGGCGCCGCCACCGGCGGAATTTGCTCACGCGCTTGGCGTGGCA
CTGAGGGCGTTCCCTGCTCGCGGCGGGGAGGAAGATGGGGGAAATCGGCC
CGCGGCGGTGGGGGATGAGGACGAGGTGGTGGCGTCGAAGCTCCCGGTGC
CGTTGGGAAGGCCCGATCGCGCTAGGGAGGCCGACGGGGCGCGCACGCCG
GCAGGGTGTGGGTGAACAGGCAGTTCTTGGTGGTGCGAGCGGCGCCGCCA
CCGGCGGAATTTGCTCACGCGCTTGGCGTGGCACTGAGGGCGTTCCCTGC
TCGCGGCGGGGAGGAAGATGGGGGAAATCGGCCCGCGGCGGTGGGGGATG
AGGACGAGGTGGTGGCGTCGAAGCTCCCGGTGCCGTTGGGAAGGCCCGAT
CGCGCTAGATGGGACACCGTTCAGACTTCGCCAACCTTCGGGAGCAGCAC
GGGTGCTTGGCCCTCGGCGTTCGACCACCATCGCCCGTTGGGGGAGTGGA
CGGATGTGACCTACTCTTCGGCCGCATCATCCGGGGGGGGTCCCGCCAAC
GTAACCCCGGAACAAAGGCTTCTCGCGGCGGACGCTATGAAGCTTGCGAA
GGGGACCGGCTTCGCAGGACCGCTAGCAGCCGTGGTGGAGTCTTTCGCGG
GATGCATCTATAGGGTCGTGGATGATGGGGGAGGTTTCGGGGCGGGTAGC
ATCAGCGGAGAGCGGGGGGCGGGAAGGGGAGAGCAAGGCGTCACCGTTCA
CGTAAGGGCTATGGGACACCGTTCAGACTTCGCCAACCTTCGGGAGCAGC
ACGGGTGCTTGGCCCTCGGCGTTCGACCACCATCGCCCGTTGGGGGAGTG
GACGGATGTGACCTACTCTTCGGCCGCATCATCCGGGGGGGGTCCCGCCA
ACGTAACCCCGGAACAAAGGCTTCTCGCGGCGGACGCTATGAAGCTTGCG
AAGGGGACCGGCTTCGCAGGACCGCTAGCAGCCGTGGTGGAGTCTTTCGC
GGGATGCATCTATAGGGTCGTGGATGATGGGGGAGGTTTCGGGGCGGGTA
GCATCAGCGGAGAGCGGGGGGCGGGAAGGGGAGAGCAAGGCGTCACCGTT
CACGTAAGGGCT
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