mRNA_F-distichus_contig106545.556.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig106545.556.1
Unique NamemRNA_F-distichus_contig106545.556.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig106545.556.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig106545contigF-distichus_contig106545:1621..1887 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size267
Cds size267
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928992.4711618-CDS-F-distichus_contig106545:1620..18871622928992.4711618-CDS-F-distichus_contig106545:1620..1887Fucus distichus monoicousCDSF-distichus_contig106545 1621..1887 +
1690885096.2044542-CDS-F-distichus_contig106545:1620..18871690885096.2044542-CDS-F-distichus_contig106545:1620..1887Fucus distichus monoicousCDSF-distichus_contig106545 1621..1887 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig106545.556.1prot_F-distichus_contig106545.556.1Fucus distichus monoicouspolypeptideF-distichus_contig106545 1621..1887 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig106545.556.1

>prot_F-distichus_contig106545.556.1 ID=prot_F-distichus_contig106545.556.1|Name=mRNA_F-distichus_contig106545.556.1|organism=Fucus distichus monoicous|type=polypeptide|length=89bp
MYPFPRYFDCLSLGCGYQTTGSKIKSTVGQFTDMQMFAEELSDSQMKAYT
NCKEFLKGDLLSWDEIPWVLAGNRKVSELEYMDLQKEIC
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mRNA from alignment at F-distichus_contig106545:1621..1887+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig106545.556.1 ID=mRNA_F-distichus_contig106545.556.1|Name=mRNA_F-distichus_contig106545.556.1|organism=Fucus distichus monoicous|type=mRNA|length=267bp|location=Sequence derived from alignment at F-distichus_contig106545:1621..1887+ (Fucus distichus monoicous)
ATGTACCCTTTCCCAAGATATTTTGACTGTTTATCTCTTGGTTGTGGCTA
CCAGACAACAGGTTCAAAAATAAAGTCCACTGTTGGTCAGTTCACAGATA
TGCAAATGTTTGCTGAAGAACTGTCAGACAGTCAGATGAAAGCTTACACC
AACTGTAAAGAGTTCTTAAAGGGAGATTTGCTCAGTTGGGATGAGATTCC
ATGGGTACTTGCTGGAAATAGAAAGGTTTCAGAACTGGAATATATGGATC
TTCAGAAAGAAATTTGC
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Coding sequence (CDS) from alignment at F-distichus_contig106545:1621..1887+

>mRNA_F-distichus_contig106545.556.1 ID=mRNA_F-distichus_contig106545.556.1|Name=mRNA_F-distichus_contig106545.556.1|organism=Fucus distichus monoicous|type=CDS|length=534bp|location=Sequence derived from alignment at F-distichus_contig106545:1621..1887+ (Fucus distichus monoicous)
ATGTACCCTTTCCCAAGATATTTTGACTGTTTATCTCTTGGTTGTGGCTA
CCAGACAACAGGTTCAAAAATAAAGTCCACTGTTGGTCAGTTCACAGATA
TGCAAATGTTTGCTGAAGAACTGTCAGACAGTCAGATGAAAGCTTACACC
AACTGTAAAGAGTTCTTAAAGGGAGATTTGCTCAGTTGGGATGAGATTCC
ATGGGTACTTGCTGGAAATAGAAAGGTTTCAGAACTGGAATATATGGATC
TTCAGAAAGAAATTTGCATGTACCCTTTCCCAAGATATTTTGACTGTTTA
TCTCTTGGTTGTGGCTACCAGACAACAGGTTCAAAAATAAAGTCCACTGT
TGGTCAGTTCACAGATATGCAAATGTTTGCTGAAGAACTGTCAGACAGTC
AGATGAAAGCTTACACCAACTGTAAAGAGTTCTTAAAGGGAGATTTGCTC
AGTTGGGATGAGATTCCATGGGTACTTGCTGGAAATAGAAAGGTTTCAGA
ACTGGAATATATGGATCTTCAGAAAGAAATTTGC
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