mRNA_F-distichus_contig106500.554.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig106500.554.1
Unique NamemRNA_F-distichus_contig106500.554.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
BLAST of mRNA_F-distichus_contig106500.554.1 vs. uniprot
Match: D7FW02_ECTSI (AAA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW02_ECTSI)

HSP 1 Score: 311 bits (798), Expect = 7.250e-102
Identity = 160/182 (87.91%), Postives = 166/182 (91.21%), Query Frame = 1
Query:   22 RPRDALEGDASLPKAIFVPRMEQRLRRLAESSSNTKANRAPFRHLLLHGPPGTGKTLFAKGLSRHSGLDYAIITGGDVAPLGREAVSEMHKLFDWAQASRQACCTFWGRGEGVCGRGVLLFVDEADAFLRRRSTERISEDMRNALNAFLYRTGEQTDRFMVVYASNQPEQFDDAINDRIDEI 567
            +P DALEGDASLPKAIFVP+MEQRLRR+AESSSNT+ANRAPFRHLLLHGPPGTGKTLFAKGL+RHSGLDYAIITGGDVAPLGREAVSEMHKLFDWAQASR               RGVLLFVDEADAFLRRRSTERISEDMRNALNAFLYRTGEQTDRFMVVYASNQPEQFDDAINDRIDE+
Sbjct:  322 KPGDALEGDASLPKAIFVPQMEQRLRRVAESSSNTRANRAPFRHLLLHGPPGTGKTLFAKGLARHSGLDYAIITGGDVAPLGREAVSEMHKLFDWAQASR---------------RGVLLFVDEADAFLRRRSTERISEDMRNALNAFLYRTGEQTDRFMVVYASNQPEQFDDAINDRIDEM 488          
BLAST of mRNA_F-distichus_contig106500.554.1 vs. uniprot
Match: A0A836C9L2_9STRA (AAA domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9L2_9STRA)

HSP 1 Score: 266 bits (679), Expect = 2.200e-83
Identity = 139/185 (75.14%), Postives = 153/185 (82.70%), Query Frame = 1
Query:   22 RPRDALEGD--ASLPKAIFVPRMEQRLRRLAESSSNTKANRAPFRHLLLHGPPGTGKTLFAKGLSRHSGLDYAIITGGDVAPLGREAVSEMHKLFDWAQASRQACCTFWGRGEGVCGRGVLLFVDEADAFLRRRSTERISEDMRNALNAFLYRTGEQTDRFMVVYASNQPEQFDDAINDRIDEIV 570
            R  DAL GD     P+AIF   +E RLRR+AESS+NT+ NRAPFRHLLL+GPPGTGKTLFAKGL++ SG+DYAI+TGGD+APLGREAVSEMHK+FDWAQ SR               RGV+LFVDEADAFLRRRSTE ISEDMRNALNAFLYRTGE TDRFMVVYASNQPEQFDDAINDRIDE+V
Sbjct:  266 RAGDALAGDIKGGRPRAIFDKALEARLRRVAESSANTRRNRAPFRHLLLYGPPGTGKTLFAKGLAQASGMDYAIMTGGDIAPLGREAVSEMHKVFDWAQTSR---------------RGVVLFVDEADAFLRRRSTEVISEDMRNALNAFLYRTGEATDRFMVVYASNQPEQFDDAINDRIDELV 435          
BLAST of mRNA_F-distichus_contig106500.554.1 vs. uniprot
Match: A0A835YR91_9STRA (AAA domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR91_9STRA)

HSP 1 Score: 255 bits (652), Expect = 9.100e-79
Identity = 129/185 (69.73%), Postives = 152/185 (82.16%), Query Frame = 1
Query:   16 FCRPRDALEGDASLPKAIFVPRMEQRLRRLAESSSNTKANRAPFRHLLLHGPPGTGKTLFAKGLSRHSGLDYAIITGGDVAPLGREAVSEMHKLFDWAQASRQACCTFWGRGEGVCGRGVLLFVDEADAFLRRRSTERISEDMRNALNAFLYRTGEQTDRFMVVYASNQPEQFDDAINDRIDEIV 570
            F +P +ALEG       +  P++E RL R+A+S+ NTK N+APFRHLLL+GPPGTGKTLFAKGL+RHSGL+YAI+TGGD+APLGR+AV+EMHKLFDWAQAS                +G+LLFVDEADAFLRRRSTERISED+RNALNAFLYRTGE TD+FM+VYASNQPEQFD A+NDRIDE+V
Sbjct:  303 FLKPSNALEG------VVLEPKLETRLSRVAQSTFNTKKNKAPFRHLLLYGPPGTGKTLFAKGLARHSGLEYAIMTGGDIAPLGRDAVTEMHKLFDWAQASN---------------KGLLLFVDEADAFLRRRSTERISEDLRNALNAFLYRTGEATDKFMLVYASNQPEQFDWAVNDRIDEMV 466          
BLAST of mRNA_F-distichus_contig106500.554.1 vs. uniprot
Match: A0A7S3HKW4_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HKW4_9STRA)

HSP 1 Score: 239 bits (609), Expect = 6.860e-75
Identity = 119/179 (66.48%), Postives = 144/179 (80.45%), Query Frame = 1
Query:   34 ALEGDASLPKAIFVPRMEQRLRRLAESSSNTKANRAPFRHLLLHGPPGTGKTLFAKGLSRHSGLDYAIITGGDVAPLGREAVSEMHKLFDWAQASRQACCTFWGRGEGVCGRGVLLFVDEADAFLRRRSTERISEDMRNALNAFLYRTGEQTDRFMVVYASNQPEQFDDAINDRIDEIV 570
            A +G+ +L   +  P +E+RL R+A S++NTK NRAPFRHLLLHGPPGTGKT+FAKGL+R  GL YAI+TGGDVAPLG++AV+E+HKLFDWA  +                +GVL+FVDEADAFLR+RSTERISEDMRNALNAFLYRTGE + +FM+VYASNQPEQFD AINDRID++V
Sbjct:  110 AAQGNNALKNVVLDPTLEKRLTRVATSTANTKKNRAPFRHLLLHGPPGTGKTMFAKGLARECGLHYAIMTGGDVAPLGKDAVTEIHKLFDWANTTN---------------KGVLIFVDEADAFLRKRSTERISEDMRNALNAFLYRTGEASYKFMIVYASNQPEQFDWAINDRIDDMV 273          
BLAST of mRNA_F-distichus_contig106500.554.1 vs. uniprot
Match: A0A7S1G0B3_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1G0B3_9STRA)

HSP 1 Score: 242 bits (617), Expect = 6.430e-74
Identity = 121/180 (67.22%), Postives = 143/180 (79.44%), Query Frame = 1
Query:   31 DALEGDASLPKAIFVPRMEQRLRRLAESSSNTKANRAPFRHLLLHGPPGTGKTLFAKGLSRHSGLDYAIITGGDVAPLGREAVSEMHKLFDWAQASRQACCTFWGRGEGVCGRGVLLFVDEADAFLRRRSTERISEDMRNALNAFLYRTGEQTDRFMVVYASNQPEQFDDAINDRIDEIV 570
            DALEG       +  P ++QRLR +A S++NTK NRAPFRHLLLHGPPGTGKTLFAKGL+RHSGL+YAI+TGGD+APLGR+AV+E+HKLFDWA+ SR               RG+LLFVDEADAFL+ R T +ISED RNALNAFLYRTG +TD+FM+VYASNQP QFD A+ DRIDE+V
Sbjct:  314 DALEG------VVLEPSLDQRLRNVARSTANTKKNRAPFRHLLLHGPPGTGKTLFAKGLARHSGLEYAILTGGDIAPLGRDAVTELHKLFDWAKTSR---------------RGLLLFVDEADAFLQSRETNQISEDQRNALNAFLYRTGTETDKFMMVYASNQPSQFDPAVTDRIDEMV 472          
BLAST of mRNA_F-distichus_contig106500.554.1 vs. uniprot
Match: A0A6H5LJ37_9PHAE (AAA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LJ37_9PHAE)

HSP 1 Score: 243 bits (619), Expect = 8.470e-74
Identity = 124/180 (68.89%), Postives = 145/180 (80.56%), Query Frame = 1
Query:   31 DALEGDASLPKAIFVPRMEQRLRRLAESSSNTKANRAPFRHLLLHGPPGTGKTLFAKGLSRHSGLDYAIITGGDVAPLGREAVSEMHKLFDWAQASRQACCTFWGRGEGVCGRGVLLFVDEADAFLRRRSTERISEDMRNALNAFLYRTGEQTDRFMVVYASNQPEQFDDAINDRIDEIV 570
            DAL G       +    +E RL R+A+S+ NTK N APFRHLLL+GPPGTGKTLFAKGL+RHSGL+YAI+TGGD+APLGR+AV+EMHK+FDWAQASR               +G+LLFVDEADAFLRRR+TE ISED+RNALNAFLYRTGE TD+FM+VYASNQPEQFD A+NDRIDE+V
Sbjct:  322 DALSG------VVLEKSLETRLSRVAQSTFNTKRNSAPFRHLLLYGPPGTGKTLFAKGLARHSGLEYAIMTGGDIAPLGRDAVTEMHKVFDWAQASR---------------KGLLLFVDEADAFLRRRNTETISEDLRNALNAFLYRTGESTDKFMLVYASNQPEQFDWAVNDRIDEMV 480          
BLAST of mRNA_F-distichus_contig106500.554.1 vs. uniprot
Match: M4BV23_HYAAE (AAA domain-containing protein n=27 Tax=Peronosporaceae TaxID=4777 RepID=M4BV23_HYAAE)

HSP 1 Score: 241 bits (615), Expect = 1.330e-73
Identity = 124/183 (67.76%), Postives = 145/183 (79.23%), Query Frame = 1
Query:   22 RPRDALEGDASLPKAIFVPRMEQRLRRLAESSSNTKANRAPFRHLLLHGPPGTGKTLFAKGLSRHSGLDYAIITGGDVAPLGREAVSEMHKLFDWAQASRQACCTFWGRGEGVCGRGVLLFVDEADAFLRRRSTERISEDMRNALNAFLYRTGEQTDRFMVVYASNQPEQFDDAINDRIDEIV 570
            +P DALEG       +  P++++RLR +A S+ NTK NRAPFRHLLLHGPPGTGKTLFAK L+RHSGL+YAI+TGGDVAPLGRE V+E+HKLFDWA  SR               RG+LLFVDEADAFL++RS   +SEDMRNALNAFLYRTGE +D+FMVV+ASNQPEQFD AINDRIDE+V
Sbjct:  308 KPTDALEG------VVLEPKLDERLRSVAVSTFNTKKNRAPFRHLLLHGPPGTGKTLFAKALARHSGLEYAILTGGDVAPLGREGVTEIHKLFDWASHSR---------------RGLLLFVDEADAFLQKRSNTVMSEDMRNALNAFLYRTGEASDKFMVVFASNQPEQFDWAINDRIDEMV 469          
BLAST of mRNA_F-distichus_contig106500.554.1 vs. uniprot
Match: A0A2D4BKB9_PYTIN (ATPase family AAA domain-containing protein 3A n=2 Tax=Pythium TaxID=4797 RepID=A0A2D4BKB9_PYTIN)

HSP 1 Score: 238 bits (608), Expect = 1.330e-72
Identity = 122/183 (66.67%), Postives = 144/183 (78.69%), Query Frame = 1
Query:   22 RPRDALEGDASLPKAIFVPRMEQRLRRLAESSSNTKANRAPFRHLLLHGPPGTGKTLFAKGLSRHSGLDYAIITGGDVAPLGREAVSEMHKLFDWAQASRQACCTFWGRGEGVCGRGVLLFVDEADAFLRRRSTERISEDMRNALNAFLYRTGEQTDRFMVVYASNQPEQFDDAINDRIDEIV 570
            +P DALEG       +  P++++RLR +A S+ NTK NRAPFRHLLLHGPPGTGKTLFAK L+RHSGL+YAI+TGGDVAPLGRE V+E+HKLFDWA  SR               RG+LLFVDEADAFL++RS   +SEDMRNALNAFLYRTGE +D+FM+V+ASNQPEQFD AINDR DE+V
Sbjct:  303 KPHDALEG------VVLEPKLDERLRSVAVSTFNTKKNRAPFRHLLLHGPPGTGKTLFAKALARHSGLEYAIMTGGDVAPLGREGVTEIHKLFDWATHSR---------------RGLLLFVDEADAFLQKRSNTVMSEDMRNALNAFLYRTGEASDKFMIVFASNQPEQFDWAINDRXDEMV 464          
BLAST of mRNA_F-distichus_contig106500.554.1 vs. uniprot
Match: A0A067CUB5_SAPPC (AAA domain-containing protein n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CUB5_SAPPC)

HSP 1 Score: 238 bits (607), Expect = 1.570e-72
Identity = 122/182 (67.03%), Postives = 143/182 (78.57%), Query Frame = 1
Query:   25 PRDALEGDASLPKAIFVPRMEQRLRRLAESSSNTKANRAPFRHLLLHGPPGTGKTLFAKGLSRHSGLDYAIITGGDVAPLGREAVSEMHKLFDWAQASRQACCTFWGRGEGVCGRGVLLFVDEADAFLRRRSTERISEDMRNALNAFLYRTGEQTDRFMVVYASNQPEQFDDAINDRIDEIV 570
            P DALEG       +  P++++RLR +A S+ NTK NRAPFRHLLLHGPPGTGKTLFAK L+RHSGL+YAI+TGGDVAPLGRE V+E+HKLFDWA  S                RG+LLFVDEADAFL++RS   +SEDMRNALNAFLYRTGE +D+FM+V+ASNQPEQFD AINDRIDE+V
Sbjct:  299 PSDALEG------VVLEPKLDERLRSVAVSTFNTKKNRAPFRHLLLHGPPGTGKTLFAKALARHSGLEYAILTGGDVAPLGREGVTEIHKLFDWASHSN---------------RGLLLFVDEADAFLQKRSNAVMSEDMRNALNAFLYRTGEASDKFMIVFASNQPEQFDWAINDRIDEMV 459          
BLAST of mRNA_F-distichus_contig106500.554.1 vs. uniprot
Match: A0A7S2D4S5_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D4S5_9STRA)

HSP 1 Score: 236 bits (602), Expect = 2.250e-72
Identity = 115/177 (64.97%), Postives = 143/177 (80.79%), Query Frame = 1
Query:   40 EGDASLPKAIFVPRMEQRLRRLAESSSNTKANRAPFRHLLLHGPPGTGKTLFAKGLSRHSGLDYAIITGGDVAPLGREAVSEMHKLFDWAQASRQACCTFWGRGEGVCGRGVLLFVDEADAFLRRRSTERISEDMRNALNAFLYRTGEQTDRFMVVYASNQPEQFDDAINDRIDEIV 570
            +   +L   +  P++  RL R+A S+SNTK N+APFRHLLL+GPPGTGKT+FAKGL+R SGL+YAI+TGGDVAPLGR+AV+E+HK+FDWA  S+               +G+LLF+DE+DAFLR+RSTE ISED+RNALNAFLYRTGE TD+FM+VYASNQPEQFD A+NDRIDE+V
Sbjct:  237 DASEALSGVVLEPKLADRLSRVATSTSNTKRNKAPFRHLLLYGPPGTGKTMFAKGLARSSGLEYAILTGGDVAPLGRDAVTEIHKVFDWANTSK---------------KGLLLFIDESDAFLRKRSTENISEDLRNALNAFLYRTGEPTDKFMLVYASNQPEQFDWAVNDRIDEMV 398          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig106500.554.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FW02_ECTSI7.250e-10287.91AAA domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A836C9L2_9STRA2.200e-8375.14AAA domain-containing protein (Fragment) n=1 Tax=T... [more]
A0A835YR91_9STRA9.100e-7969.73AAA domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A7S3HKW4_9STRA6.860e-7566.48Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S1G0B3_9STRA6.430e-7467.22Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A6H5LJ37_9PHAE8.470e-7468.89AAA domain-containing protein n=2 Tax=Ectocarpus T... [more]
M4BV23_HYAAE1.330e-7367.76AAA domain-containing protein n=27 Tax=Peronospora... [more]
A0A2D4BKB9_PYTIN1.330e-7266.67ATPase family AAA domain-containing protein 3A n=2... [more]
A0A067CUB5_SAPPC1.570e-7267.03AAA domain-containing protein n=4 Tax=Saprolegniac... [more]
A0A7S2D4S5_9STRA2.250e-7264.97Hypothetical protein n=1 Tax=Florenciella parvula ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig106500contigF-distichus_contig106500:343..1804 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score312.0
Seed ortholog evalue1.9e-82
Seed eggNOG ortholog2880.D7FW02
Preferred nameATAD3A
KEGG koko:K17681
Hectar predicted targeting categoryother localisation
GOsGO:0001558,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005886,GO:0006810,GO:0006887,GO:0006955,GO:0006996,GO:0007005,GO:0008150,GO:0009987,GO:0010941,GO:0012505,GO:0012506,GO:0016020,GO:0016043,GO:0016192,GO:0030141,GO:0030659,GO:0030667,GO:0031090,GO:0031410,GO:0031982,GO:0032940,GO:0036230,GO:0040008,GO:0042119,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043299,GO:0043312,GO:0044422,GO:0044424,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045321,GO:0046903,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051179,GO:0051234,GO:0060548,GO:0065007,GO:0070820,GO:0071840,GO:0071944,GO:0097708,GO:0098588,GO:0098805,GO:0099503,GO:0101002,GO:0101003
EggNOG free text desc.mitochondrion organization
EggNOG OGsCOG1223@1,KOG0742@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03029
Exons4
Model size576
Cds size576
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig106500.554.1prot_F-distichus_contig106500.554.1Fucus distichus monoicouspolypeptideF-distichus_contig106500 343..1804 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928992.3064687-CDS-F-distichus_contig106500:342..4921622928992.3064687-CDS-F-distichus_contig106500:342..492Fucus distichus monoicousCDSF-distichus_contig106500 343..492 -
1690885096.0918899-CDS-F-distichus_contig106500:342..4921690885096.0918899-CDS-F-distichus_contig106500:342..492Fucus distichus monoicousCDSF-distichus_contig106500 343..492 -
1622928992.323595-CDS-F-distichus_contig106500:638..6991622928992.323595-CDS-F-distichus_contig106500:638..699Fucus distichus monoicousCDSF-distichus_contig106500 639..699 -
1690885096.1027396-CDS-F-distichus_contig106500:638..6991690885096.1027396-CDS-F-distichus_contig106500:638..699Fucus distichus monoicousCDSF-distichus_contig106500 639..699 -
1622928992.3369734-CDS-F-distichus_contig106500:974..11731622928992.3369734-CDS-F-distichus_contig106500:974..1173Fucus distichus monoicousCDSF-distichus_contig106500 975..1173 -
1690885096.1172736-CDS-F-distichus_contig106500:974..11731690885096.1172736-CDS-F-distichus_contig106500:974..1173Fucus distichus monoicousCDSF-distichus_contig106500 975..1173 -
1622928992.3591595-CDS-F-distichus_contig106500:1638..18041622928992.3591595-CDS-F-distichus_contig106500:1638..1804Fucus distichus monoicousCDSF-distichus_contig106500 1639..1804 -
1690885096.1775732-CDS-F-distichus_contig106500:1638..18041690885096.1775732-CDS-F-distichus_contig106500:1638..1804Fucus distichus monoicousCDSF-distichus_contig106500 1639..1804 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig106500.554.1

>prot_F-distichus_contig106500.554.1 ID=prot_F-distichus_contig106500.554.1|Name=mRNA_F-distichus_contig106500.554.1|organism=Fucus distichus monoicous|type=polypeptide|length=192bp
MTHQSFCRPRDALEGDASLPKAIFVPRMEQRLRRLAESSSNTKANRAPFR
HLLLHGPPGTGKTLFAKGLSRHSGLDYAIITGGDVAPLGREAVSEMHKLF
DWAQASRQACCTFWGRGEGVCGRGVLLFVDEADAFLRRRSTERISEDMRN
ALNAFLYRTGEQTDRFMVVYASNQPEQFDDAINDRIDEIVS*
back to top

mRNA from alignment at F-distichus_contig106500:343..1804-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig106500.554.1 ID=mRNA_F-distichus_contig106500.554.1|Name=mRNA_F-distichus_contig106500.554.1|organism=Fucus distichus monoicous|type=mRNA|length=1462bp|location=Sequence derived from alignment at F-distichus_contig106500:343..1804- (Fucus distichus monoicous)
ATGACACATCAATCATTTTGTAGGCCCAGAGACGCTCTGGAAGGCGACGC CTCCTTGCCAAAGGCGATATTCGTGCCCCGGATGGAGCAACGGCTCCGCA GGTTGGCGGAGTCGTCCTCCAACACCAAGGCCAACCGCGCCCCCTTCCGC CACCTTCTCCTCCACGGTGAGCCTAGAGGACCTCCGTCCTTCTGGCTCTC CATGTCGCCTCCTCTAGGCATCCTTGCCCTCCACTGTCAGTGTTGCTGCT GTTGTTGCTGCTGCTGTTGGTATGTTATTGGAATGAATGATTCTGTGTGT TGCACTTGTTCATCTTTCTGTGGGGAGAATAAACATTTTGACGATGCTTA CTGCCGATGTAGTGCTGCTATCTCGCTTAATATTTGAGATCGGGGGGGCG AGATTAAAACTTTTTTTCGGCAGGAAAAATTAAATGTAGATCAATCCCGA CCAGACGCAACGCGGACCCCCGCCCCCCCCCCCCCCCCAAAAAAAAAGCA AAAATCAAACAGTCAAAACCCTCTGCGCATGTTGTAGTACAATTCAAAGT ACAGTACATTCCTCCAAAAGGAATCTTACTCGATCGCTTCTCTCCTTTGC AACAAATTACGAACCCGCTCTGTTCCGGCAGGGCCGCCCGGGACGGGAAA GACCCTGTTCGCTAAGGGTCTCTCGCGGCATTCAGGGCTAGATTACGCGA TCATCACGGGAGGAGATGTGGCGCCGCTTGGCCGGGAGGCCGTGTCGGAG ATGCACAAGCTCTTCGATTGGGCACAAGCTAGCAGGCAAGCATGTTGTAC TTTTTGGGGGAGGGGGGAAGGGGTTTGCGGGTGAGTTTTTGGGGCGCGGA AATGGGAGAAGGGAAAATACAGACGTATGAGGGCTGGGGACTTGACGGCC GTGGATTTGATAATCACTCAGTGTTCACTGTACTTACCGTGGGTTTCTCC GCCCGTTTGGCGGTATTTTTATCGAGGGGATTGTGTTTCCTCGAGACGTT TACGTGCGCGTCGTTGGGGAGCCCTCTTGAAAATATCATGTTTCCAGAAT GCGATCATGCATCTGATGATGCGGTTTTACGGTGTGACGTGTTTCGCTGC TGCAGGCGCGGCGTGCTGCTCTTCGTTGACGAGGCCGACGCTTTCCTCCG GAGAAGGAGCACCGAGGTGCGAGCCAAAGTCAGAGTAGCTTTCGCGTGAC GGTGTGTGCGGAGCCGGTATTCCACCGCGTTTGGTTCCATCAGAGGGTCA AGCCTTTGATTGATCGCGACACAGATTCCTGCTCGGTCCCTCCGTATGCA TTGTCGGTCCAGCGCATCAGCGAGGACATGCGGAACGCGCTCAACGCTTT CCTGTACCGCACGGGGGAGCAAACGGATCGCTTCATGGTGGTGTACGCTT CGAACCAGCCGGAGCAGTTCGACGACGCCATTAACGACCGCATCGACGAG ATTGTGAGTTGA
back to top

Coding sequence (CDS) from alignment at F-distichus_contig106500:343..1804-

>mRNA_F-distichus_contig106500.554.1 ID=mRNA_F-distichus_contig106500.554.1|Name=mRNA_F-distichus_contig106500.554.1|organism=Fucus distichus monoicous|type=CDS|length=1152bp|location=Sequence derived from alignment at F-distichus_contig106500:343..1804- (Fucus distichus monoicous)
ATGACACATCAATCATTTTGTAGGCCCAGAGACGCTCTGGAAGGCGACGC
CTCCTTGCCAAAGGCGATATTCGTGCCCCGGATGGAGCAACGGCTCCGCA
GGTTGGCGGAGTCGTCCTCCAACACCAAGGCCAACCGCGCCCCCTTCCGC
CACCTTCTCCTCCACGATGACACATCAATCATTTTGTAGGCCCAGAGACG
CTCTGGAAGGCGACGCCTCCTTGCCAAAGGCGATATTCGTGCCCCGGATG
GAGCAACGGCTCCGCAGGTTGGCGGAGTCGTCCTCCAACACCAAGGCCAA
CCGCGCCCCCTTCCGCCACCTTCTCCTCCACGGGCCGCCCGGGACGGGAA
AGACCCTGTTCGCTAAGGGTCTCTCGCGGCATTCAGGGCTAGATTACGCG
ATCATCACGGGAGGAGATGTGGCGCCGCTTGGCCGGGAGGCCGTGTCGGA
GATGCACAAGCTCTTCGATTGGGCACAAGCTAGCAGGCAAGCATGTTGTA
CTTTTTGGGGGAGGGGGGAAGGGGTTTGCGGGGCCGCCCGGGACGGGAAA
GACCCTGTTCGCTAAGGGTCTCTCGCGGCATTCAGGGCTAGATTACGCGA
TCATCACGGGAGGAGATGTGGCGCCGCTTGGCCGGGAGGCCGTGTCGGAG
ATGCACAAGCTCTTCGATTGGGCACAAGCTAGCAGGCAAGCATGTTGTAC
TTTTTGGGGGAGGGGGGAAGGGGTTTGCGGGCGCGGCGTGCTGCTCTTCG
TTGACGAGGCCGACGCTTTCCTCCGGAGAAGGAGCACCGAGGCGCGGCGT
GCTGCTCTTCGTTGACGAGGCCGACGCTTTCCTCCGGAGAAGGAGCACCG
AGCGCATCAGCGAGGACATGCGGAACGCGCTCAACGCTTTCCTGTACCGC
ACGGGGGAGCAAACGGATCGCTTCATGGTGGTGTACGCTTCGAACCAGCC
GGAGCAGTTCGACGACGCCATTAACGACCGCATCGACGAGATTGTGAGTT
GACGCATCAGCGAGGACATGCGGAACGCGCTCAACGCTTTCCTGTACCGC
ACGGGGGAGCAAACGGATCGCTTCATGGTGGTGTACGCTTCGAACCAGCC
GGAGCAGTTCGACGACGCCATTAACGACCGCATCGACGAGATTGTGAGTT
GA
back to top