mRNA_F-distichus_contig106462.551.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig106462.551.1
Unique NamemRNA_F-distichus_contig106462.551.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig106462.551.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig106462contigF-distichus_contig106462:2..1218 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size235
Cds size234
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928991.968404-CDS-F-distichus_contig106462:1..961622928991.968404-CDS-F-distichus_contig106462:1..96Fucus distichus monoicousCDSF-distichus_contig106462 2..96 -
1690885095.8625822-CDS-F-distichus_contig106462:1..961690885095.8625822-CDS-F-distichus_contig106462:1..96Fucus distichus monoicousCDSF-distichus_contig106462 2..96 -
1622928991.9904215-CDS-F-distichus_contig106462:1079..12181622928991.9904215-CDS-F-distichus_contig106462:1079..1218Fucus distichus monoicousCDSF-distichus_contig106462 1080..1218 -
1690885095.8769677-CDS-F-distichus_contig106462:1079..12181690885095.8769677-CDS-F-distichus_contig106462:1079..1218Fucus distichus monoicousCDSF-distichus_contig106462 1080..1218 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig106462.551.1prot_F-distichus_contig106462.551.1Fucus distichus monoicouspolypeptideF-distichus_contig106462 2..1218 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig106462.551.1

>prot_F-distichus_contig106462.551.1 ID=prot_F-distichus_contig106462.551.1|Name=mRNA_F-distichus_contig106462.551.1|organism=Fucus distichus monoicous|type=polypeptide|length=78bp
IDFNKQAEQPWYPVGLQRVKQSLVGRSSCSLPVILSLKRKRCRARSGGNI
WPNNRDCTVPASRPNWRTPEADRKTLGA
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mRNA from alignment at F-distichus_contig106462:2..1218-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig106462.551.1 ID=mRNA_F-distichus_contig106462.551.1|Name=mRNA_F-distichus_contig106462.551.1|organism=Fucus distichus monoicous|type=mRNA|length=1217bp|location=Sequence derived from alignment at F-distichus_contig106462:2..1218- (Fucus distichus monoicous)
ATTGATTTCAATAAGCAGGCCGAGCAACCGTGGTATCCTGTCGGTCTACA
ACGAGTGAAACAGAGTTTAGTAGGAAGATCGTCTTGCTCGCTTCCCGTAA
TCTTGAGCCTCAAACGGAAACGGTGTAGGGCTCGTTCAGGTAAAGTTTTC
GATGTAGAGTCGGGCTACCACCTCACCTGTCGCCTTCCTACTCCGTAGCA
GTGCTGTTGCTGACATGTTTCTGCAGAATGAAACCACCCCTACTGCTGCT
GCTGTATAGACCGTCTCGAGCGAGCATAGTGCGTGAGATGCCAAGAAAGA
TACCAAAAACTCCTTCCGTCCCTAGATCGTATGGGACGGCATCATTGCCT
GCTCCGGGTTACATCTCCAAAAGAGAGCCATGTCGATTGAAAGTGGATGT
TGGCCTAATTTTTCAAACAAAGTAGTCGATATTCTGACGACGCACCGCAT
GCGTGGCTTGTTGAGGCGGTATTGGACAGTCGTAAAAAACATTACTCTTA
CTGTCGCCCCCAGGCGTTGATGGCGTGAAATGCCGTCCCACTGGCAGTTG
CTGCACCTCTATCGCTATCGCGCTCCTCTTAGATGCGATGTTTTTCGTGT
GGTTGCTTTCTATGAGACGGTGTCGCAGGACTCCAGTCGAAATTCAAAGT
TGCGTGTTCATATTTTTTCTTTGCCAAAATACTCTGTACCTGTACAAGTA
TATGTATGTATATGTATTGTCACACTTGTAGCAGAGAAAGGATCAACCGG
TAAGGTTGACGATCCTGCTCGTGGTCAGCTGAACAGGGAAAATGAGTATT
TTCCTGTCCGCGTTCGCGCCTGAGAAACTGGCCTCGCGAGACGGGTTCGG
CAGTCCCGTCCCGCTCCATATGTACTCTTCATCTCTACTCTCTGTACAGA
GAGCACCATTTTAGACTACAATCTGTGGGTTATTCGCAAGGCGTTCAATT
TTTTTCGTCCTGCTGTACACTGCTGGCCAGTATTTTGTGTGCTCTAATTT
GTAATTTCTGCGCTGTCACGTAATTACTCGAATAATATATTGCTAAGTGA
CGCAAGATACAGATATGACAGCTCTAAGCCGCCTACCATCTTTGCTGCTC
TTGCTGTCATCTCCAACAACAGGTGGTAATATTTGGCCGAACAATCGCGA
CTGTACAGTACCAGCATCGCGGCCGAACTGGCGAACACCAGAGGCAGACA
GAAAAACGCTGGGTGCC
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Coding sequence (CDS) from alignment at F-distichus_contig106462:2..1218-

>mRNA_F-distichus_contig106462.551.1 ID=mRNA_F-distichus_contig106462.551.1|Name=mRNA_F-distichus_contig106462.551.1|organism=Fucus distichus monoicous|type=CDS|length=468bp|location=Sequence derived from alignment at F-distichus_contig106462:2..1218- (Fucus distichus monoicous)
ATTGATTTCAATAAGCAGGCCGAGCAACCGTGGTATCCTGTCGGTCTACA
ACGAGTGAAACAGAGTTTAGTAGGAAGATCGTCTTGCTCGCTTCCCGTAA
TCTTGAGCCTCAAACGGAAACGGTGTAGGGCTCGTTCAGATTGATTTCAA
TAAGCAGGCCGAGCAACCGTGGTATCCTGTCGGTCTACAACGAGTGAAAC
AGAGTTTAGTAGGAAGATCGTCTTGCTCGCTTCCCGTAATCTTGAGCCTC
AAACGGAAACGGTGTAGGGCTCGTTCAGGTGGTAATATTTGGCCGAACAA
TCGCGACTGTACAGTACCAGCATCGCGGCCGAACTGGCGAACACCAGAGG
CAGACAGAAAAACGCTGGGTGCCGTGGTAATATTTGGCCGAACAATCGCG
ACTGTACAGTACCAGCATCGCGGCCGAACTGGCGAACACCAGAGGCAGAC
AGAAAAACGCTGGGTGCC
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