mRNA_F-distichus_contig106352.542.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig106352.542.1
Unique NamemRNA_F-distichus_contig106352.542.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig106352.542.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig106352contigF-distichus_contig106352:740..1459 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size720
Cds size381
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928991.046623-CDS-F-distichus_contig106352:739..11201622928991.046623-CDS-F-distichus_contig106352:739..1120Fucus distichus monoicousCDSF-distichus_contig106352 740..1120 +
1690885094.9640946-CDS-F-distichus_contig106352:739..11201690885094.9640946-CDS-F-distichus_contig106352:739..1120Fucus distichus monoicousCDSF-distichus_contig106352 740..1120 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928991.0644858-UTR-F-distichus_contig106352:1120..14591622928991.0644858-UTR-F-distichus_contig106352:1120..1459Fucus distichus monoicousUTRF-distichus_contig106352 1121..1459 +
1690885094.9767914-UTR-F-distichus_contig106352:1120..14591690885094.9767914-UTR-F-distichus_contig106352:1120..1459Fucus distichus monoicousUTRF-distichus_contig106352 1121..1459 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig106352.542.1prot_F-distichus_contig106352.542.1Fucus distichus monoicouspolypeptideF-distichus_contig106352 740..1120 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig106352.542.1

>prot_F-distichus_contig106352.542.1 ID=prot_F-distichus_contig106352.542.1|Name=mRNA_F-distichus_contig106352.542.1|organism=Fucus distichus monoicous|type=polypeptide|length=127bp
MRRAQAHRAYWRNQNKYYLEQGYHLVSYSTWEKKFRGRRVPLQAFFWWKT
HQGWWLGQVKAWDRDIYNQYFVRFHDDPGLAQVMLAEEFYTIDVDGVPGS
WCLQSHIREGIIRDTDMSRDADFQES*
back to top

mRNA from alignment at F-distichus_contig106352:740..1459+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig106352.542.1 ID=mRNA_F-distichus_contig106352.542.1|Name=mRNA_F-distichus_contig106352.542.1|organism=Fucus distichus monoicous|type=mRNA|length=720bp|location=Sequence derived from alignment at F-distichus_contig106352:740..1459+ (Fucus distichus monoicous)
ATGCGCAGGGCACAGGCACACAGAGCCTACTGGCGTAATCAGAACAAGTA
CTACCTAGAACAAGGATACCATCTAGTGTCATACAGTACTTGGGAAAAGA
AATTCAGAGGGCGGAGAGTACCGCTTCAGGCCTTCTTTTGGTGGAAAACC
CATCAAGGCTGGTGGTTGGGACAGGTGAAGGCATGGGACAGAGACATTTA
TAATCAATACTTCGTGCGATTCCACGATGATCCAGGGCTAGCACAAGTAA
TGTTGGCGGAAGAGTTCTACACAATAGATGTTGATGGGGTACCAGGATCG
TGGTGCTTACAGTCGCATATACGGGAAGGCATTATCCGCGATACCGACAT
GTCACGTGATGCCGATTTCCAGGAGAGCTGACGAGACCAAGACGAAGAGA
GACAACAACGCACCGGAGCGAGCGCTTCTGGGAGGCCCAGTATAAATCGT
TTTGACAGGTAGACTTCGAGCCTCGAGCGCAAGATCAAGAACGACCTCTC
CCCAGTTCAGCGTGGAAGACGTTTACGGGCGGAACGCTGTCAGAAGACAG
TCCCATCTTGGAGAAATCGGCCGGCCAAGATAGTATCGGTGGGCTGATAT
TGGCAATGATGAATCCAACGCTGGGACCGTAGGAAGTGTTTCGGTTTGGG
TCTGCGAGGATTTCATCTTGATTGGGCATAAACAACTAACGGAAGAGTAT
TTGGTACTGTAATCTGATAC
back to top

Coding sequence (CDS) from alignment at F-distichus_contig106352:740..1459+

>mRNA_F-distichus_contig106352.542.1 ID=mRNA_F-distichus_contig106352.542.1|Name=mRNA_F-distichus_contig106352.542.1|organism=Fucus distichus monoicous|type=CDS|length=762bp|location=Sequence derived from alignment at F-distichus_contig106352:740..1459+ (Fucus distichus monoicous)
ATGCGCAGGGCACAGGCACACAGAGCCTACTGGCGTAATCAGAACAAGTA
CTACCTAGAACAAGGATACCATCTAGTGTCATACAGTACTTGGGAAAAGA
AATTCAGAGGGCGGAGAGTACCGCTTCAGGCCTTCTTTTGGTGGAAAACC
CATCAAGGCTGGTGGTTGGGACAGGTGAAGGCATGGGACAGAGACATTTA
TAATCAATACTTCGTGCGATTCCACGATGATCCAGGGCTAGCACAAGTAA
TGTTGGCGGAAGAGTTCTACACAATAGATGTTGATGGGGTACCAGGATCG
TGGTGCTTACAGTCGCATATACGGGAAGGCATTATCCGCGATACCGACAT
GTCACGTGATGCCGATTTCCAGGAGAGCTGAATGCGCAGGGCACAGGCAC
ACAGAGCCTACTGGCGTAATCAGAACAAGTACTACCTAGAACAAGGATAC
CATCTAGTGTCATACAGTACTTGGGAAAAGAAATTCAGAGGGCGGAGAGT
ACCGCTTCAGGCCTTCTTTTGGTGGAAAACCCATCAAGGCTGGTGGTTGG
GACAGGTGAAGGCATGGGACAGAGACATTTATAATCAATACTTCGTGCGA
TTCCACGATGATCCAGGGCTAGCACAAGTAATGTTGGCGGAAGAGTTCTA
CACAATAGATGTTGATGGGGTACCAGGATCGTGGTGCTTACAGTCGCATA
TACGGGAAGGCATTATCCGCGATACCGACATGTCACGTGATGCCGATTTC
CAGGAGAGCTGA
back to top