mRNA_F-distichus_contig106214.529.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig106214.529.1
Unique NamemRNA_F-distichus_contig106214.529.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
BLAST of mRNA_F-distichus_contig106214.529.1 vs. uniprot
Match: A0A6H5KMU8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMU8_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 1.030e-17
Identity = 48/107 (44.86%), Postives = 61/107 (57.01%), Query Frame = 1
Query:    7 SGWYTSTLQLQLASLQLCVLCRGVSTLHLTTTSGVPSWMWKGSPASDCNMK--KLRSSRVPTLRPLKLSWELWGSPFEKCCSAVMANVEQLIFGRAFNQPIDGFAWP 321
            +GWYTS LQLQLASLQLC+ CR V T HLT    V + +W  S A     +   L  SRVP LRP K++W L       C  A   +V+ L+FG +F+  +D   WP
Sbjct:   30 NGWYTSKLQLQLASLQLCLACRRVPTSHLTVERDVLALLWPHSAAEATRSRLVSLGQSRVPALRPRKVTWNLATLSMRHCGDA-FESVDVLVFGDSFDYRVDRVTWP 135          
BLAST of mRNA_F-distichus_contig106214.529.1 vs. uniprot
Match: A0A6H5KPY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPY7_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 2.360e-15
Identity = 41/107 (38.32%), Postives = 60/107 (56.07%), Query Frame = 1
Query:    1 DGSGWYTSTLQLQLASLQLCVLCRGVSTLHLTTTSGVPSWMWKGSPASDCNMKKLRSSRVPTLRPLKLSWELWGSPFEKCCSAVMANVEQLIFGRAFNQPIDGFAWP 321
            DG  WYTST +LQLASL+LC+ CR   TLHLT  +  P  +   + A   + K+L  +RVP LR  + +W +  +   +       +V+ L FG+AF+  +D   WP
Sbjct:  149 DGKSWYTSTKELQLASLELCMACRHYQTLHLTVDAHTPRRLLAAADAPSPHPKRLCGTRVPRLRARRATWNVPTASGMRTSIFATMDVDYLEFGQAFHGSLDAIVWP 255          
BLAST of mRNA_F-distichus_contig106214.529.1 vs. uniprot
Match: A0A6H5JRF9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRF9_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 1.080e-13
Identity = 38/107 (35.51%), Postives = 57/107 (53.27%), Query Frame = 1
Query:    1 DGSGWYTSTLQLQLASLQLCVLCRGVSTLHLTTTSGVPSWMWKGSPASDCNMKKLRSSRVPTLRPLKLSWELWGSPFEKCCSAVMANVEQLIFGRAFNQPIDGFAWP 321
            DG  WYTST +LQLASL  C+ CR   T+HL     +P  +   + A   + K+L  +RVP LR  +++W +  +   +     M ++E L FG AF   ++   WP
Sbjct:   64 DGKSWYTSTKELQLASLDFCIACRNCQTVHLNVDEQIPRRLLASADAPPPHPKRLCWTRVPRLRSRRVTWNMPTAAKLRTPIFAMTDMEYLEFGDAFGDSLEAVPWP 170          
BLAST of mRNA_F-distichus_contig106214.529.1 vs. uniprot
Match: A0A6H5JZZ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZZ4_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 2.120e-12
Identity = 36/107 (33.64%), Postives = 55/107 (51.40%), Query Frame = 1
Query:    1 DGSGWYTSTLQLQLASLQLCVLCRGVSTLHLTTTSGVPSWMWKGSPASDCNMKKLRSSRVPTLRPLKLSWELWGSPFEKCCSAVMANVEQLIFGRAFNQPIDGFAWP 321
            DG  WYTST +LQLASL+ C+ CR   TLHL     +P  +   +     + K+L   RVP LR   ++W +  +   +     + +++ L FG AF   ++   WP
Sbjct:   49 DGKSWYTSTKELQLASLEFCMACRAYQTLHLIVDVRIPRMLLAAADGPPQHPKRLSRRRVPRLRARHVTWNMPTAAELRSPIFALMDLDHLDFGSAFEGSLEAVTWP 155          
BLAST of mRNA_F-distichus_contig106214.529.1 vs. uniprot
Match: D7FT95_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT95_ECTSI)

HSP 1 Score: 72.8 bits (177), Expect = 3.840e-12
Identity = 37/110 (33.64%), Postives = 56/110 (50.91%), Query Frame = 1
Query:    1 DGSGWYTSTLQLQLASLQLCVLCRGVSTLHLTTTSGVPSWMWKGSPAS--DCNMKKLRSSRVPTLRPLKLSWELWGSPFEKCCSAVMANVEQLIFGRAFNQPID-GFAWP 321
             G  WYTST+QLQLASL+LC  CR +  L L    G P+ +W+G+  +    ++K+   +RVP +R   ++W+L G           + V     G  F+  +  G  WP
Sbjct:   24 SGGEWYTSTMQLQLASLELCASCRSMHLLKLNVQHGTPTRLWRGTATTRETRSVKRRNVTRVPVVRARTVTWKLPGLALRNMTGDAWSEVTTFSLGPGFDDDLPRGIQWP 133          
BLAST of mRNA_F-distichus_contig106214.529.1 vs. uniprot
Match: A0A6H5JG83_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG83_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 3.040e-11
Identity = 42/113 (37.17%), Postives = 53/113 (46.90%), Query Frame = 1
Query:    4 GSGWYTSTLQLQLASLQLCVLCRGVSTLHLTTTSGVPSWMWKG--SPASDCNMKKLRSS--------RVPTLRPLKLSWELWGSPFEKCCSAVMANVEQLIFGRAFNQPIDGF 312
            G  WY ST+QLQLAS++ CV CR VSTLHLT   G P  +W    S  SD                 RVP  RP +++W L  S   +       N+E + F  A  +  D F
Sbjct:   10 GKQWYISTVQLQLASVEFCVACRSVSTLHLTVEEGTPRHLWADTWSDQSDXXXXXXXXXXXGRSVLVRVPPFRPREVTWNLPPSMLSEASKDAFKNLECMSFSDAVERSGDSF 122          
BLAST of mRNA_F-distichus_contig106214.529.1 vs. uniprot
Match: A0A6H5JA08_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA08_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 3.990e-11
Identity = 36/110 (32.73%), Postives = 54/110 (49.09%), Query Frame = 1
Query:    1 DGSGWYTSTLQLQLASLQLCVLCRGVSTLHLTTTSGVPSWMWKGSPAS--DCNMKKLRSSRVPTLRPLKLSWELWGSPFEKCCSAVMANVEQLIFGRAFNQPID-GFAWP 321
             G  WYTST+QLQL SL+LC  CR +  L L    G P  +W+G+  +    ++K+   +RVP +R   ++W+L G           + V     G  F+  +  G  WP
Sbjct:   55 SGGEWYTSTMQLQLTSLELCAACRSMHLLKLNVQHGTPPRLWRGTATTRETRSVKRRNVTRVPVVRARTVTWKLPGVALRNMTGDAWSEVTTFSLGPGFDDDLPRGIQWP 164          
BLAST of mRNA_F-distichus_contig106214.529.1 vs. uniprot
Match: D7FXS2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXS2_ECTSI)

HSP 1 Score: 68.2 bits (165), Expect = 7.590e-11
Identity = 40/110 (36.36%), Postives = 59/110 (53.64%), Query Frame = 1
Query:    1 DGSGWYTSTLQLQLASLQLCVLCRGVSTLHLTTTSG-VPSWMWKGSPASDCNM--KKLRSSRVPTLRPLKLSWELWGSPFEKCCSAVMANVEQLIFGRAFNQPIDGFAWP 321
            DG+ WYTST +LQLASLQ CV CR V +LHL   +  VP+ +W    A++     K+  ++ VP  RP +++W          C  V A VE+ +  +  +  +D   WP
Sbjct:   20 DGNVWYTSTKELQLASLQFCVKCRKVPSLHLAVNNAHVPARLWNDHAATEARTGAKRPSTTPVPVFRPREVTWGRPAWLLSDIC-LVFAKVERFLVRQ--DTVVDDVVWP 126          
BLAST of mRNA_F-distichus_contig106214.529.1 vs. uniprot
Match: D7FH81_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH81_ECTSI)

HSP 1 Score: 67.8 bits (164), Expect = 1.110e-10
Identity = 34/107 (31.78%), Postives = 55/107 (51.40%), Query Frame = 1
Query:    1 DGSGWYTSTLQLQLASLQLCVLCRGVSTLHLTTTSGVPSWMWKGSPASDCNMKKLRSSRVPTLRPLKLSWELWGSPFEKCCSAVMANVEQLIFGRAFNQPIDGFAWP 321
            DG+ WYTST +LQ ASL+ C+ CR    +HL     +P  +   + A   + K+L  +RVP LR   ++W +  +         + +V+ L FG  F+  ++   WP
Sbjct:   27 DGTSWYTSTKELQRASLEFCIACRNYPIMHLKVDPQIPRNLLAAADAPPPHPKRLCWTRVPRLRARSVTWNMRAAAELGNPIFAITDVDCLEFGGTFDGSLEAVTWP 133          
BLAST of mRNA_F-distichus_contig106214.529.1 vs. uniprot
Match: A0A6H5JYF0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYF0_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 4.490e-10
Identity = 37/107 (34.58%), Postives = 53/107 (49.53%), Query Frame = 1
Query:    1 DGSGWYTSTLQLQLASLQLCVLCRGVSTLHLTTTSGVPSWMWKGSPASDCNMKKLRSSRVPTLRPLKLSWELWGSPFEKCCSAVMANVEQLIFGRAFNQPIDGFAWP 321
            DG  WYTST +LQ ASL+ C+ CR   TL L      P  +     A   + K+   +RVP LR  ++ W +  +   K     + +V +L FG AF   ++  AWP
Sbjct:    3 DGKRWYTSTKELQQASLEFCIACRKYQTLRLRVDVQTPRTLLAAVDAPSPHSKRPCRTRVPRLRARRVIWNMPTATELKSPIFALKDVVRLDFGPAFEGSLESVAWP 109          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig106214.529.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A6H5KMU8_9PHAE1.030e-1744.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KPY7_9PHAE2.360e-1538.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRF9_9PHAE1.080e-1335.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZZ4_9PHAE2.120e-1233.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FT95_ECTSI3.840e-1233.64Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JG83_9PHAE3.040e-1137.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JA08_9PHAE3.990e-1132.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXS2_ECTSI7.590e-1136.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FH81_ECTSI1.110e-1031.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JYF0_9PHAE4.490e-1034.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig106214contigF-distichus_contig106214:30..566 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size537
Cds size537
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928989.6717672-CDS-F-distichus_contig106214:29..5661622928989.6717672-CDS-F-distichus_contig106214:29..566Fucus distichus monoicousCDSF-distichus_contig106214 30..566 +
1690885094.1410005-CDS-F-distichus_contig106214:29..5661690885094.1410005-CDS-F-distichus_contig106214:29..566Fucus distichus monoicousCDSF-distichus_contig106214 30..566 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig106214.529.1prot_F-distichus_contig106214.529.1Fucus distichus monoicouspolypeptideF-distichus_contig106214 30..566 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig106214.529.1

>prot_F-distichus_contig106214.529.1 ID=prot_F-distichus_contig106214.529.1|Name=mRNA_F-distichus_contig106214.529.1|organism=Fucus distichus monoicous|type=polypeptide|length=179bp
DGSGWYTSTLQLQLASLQLCVLCRGVSTLHLTTTSGVPSWMWKGSPASDC
NMKKLRSSRVPTLRPLKLSWELWGSPFEKCCSAVMANVEQLIFGRAFNQP
IDGFAWPASLQKLVFGEEFDQPIEEVAWPASLHQLVLGRAFNHPIERVAW
PSSLQHLTIGFSFNQAIDGVAWPSSLQHL
back to top

mRNA from alignment at F-distichus_contig106214:30..566+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig106214.529.1 ID=mRNA_F-distichus_contig106214.529.1|Name=mRNA_F-distichus_contig106214.529.1|organism=Fucus distichus monoicous|type=mRNA|length=537bp|location=Sequence derived from alignment at F-distichus_contig106214:30..566+ (Fucus distichus monoicous)
GACGGCAGTGGGTGGTACACATCGACCTTGCAACTTCAGCTCGCGTCCCT ACAACTTTGCGTGCTTTGCAGGGGCGTTTCTACCTTGCATTTGACGACAA CGTCTGGCGTGCCGAGCTGGATGTGGAAGGGTTCTCCCGCTTCTGATTGC AACATGAAAAAGCTCCGCAGCAGTCGCGTTCCTACCCTTCGGCCGCTTAA ATTATCGTGGGAGCTATGGGGATCACCATTTGAAAAGTGTTGTAGCGCCG TGATGGCAAATGTTGAGCAGCTCATATTCGGACGGGCGTTCAACCAGCCG ATCGACGGGTTCGCTTGGCCGGCGTCACTTCAGAAACTAGTCTTTGGAGA AGAATTCGACCAGCCGATCGAAGAGGTCGCGTGGCCGGCGTCCCTCCATC AGCTTGTACTCGGACGGGCGTTCAACCATCCGATCGAGAGGGTCGCGTGG CCTTCGTCTCTCCAGCACCTCACAATTGGATTTTCGTTCAACCAAGCAAT CGACGGTGTCGCGTGGCCTTCGTCTCTCCAGCACCTC
back to top

Coding sequence (CDS) from alignment at F-distichus_contig106214:30..566+

>mRNA_F-distichus_contig106214.529.1 ID=mRNA_F-distichus_contig106214.529.1|Name=mRNA_F-distichus_contig106214.529.1|organism=Fucus distichus monoicous|type=CDS|length=1074bp|location=Sequence derived from alignment at F-distichus_contig106214:30..566+ (Fucus distichus monoicous)
GACGGCAGTGGGTGGTACACATCGACCTTGCAACTTCAGCTCGCGTCCCT
ACAACTTTGCGTGCTTTGCAGGGGCGTTTCTACCTTGCATTTGACGACAA
CGTCTGGCGTGCCGAGCTGGATGTGGAAGGGTTCTCCCGCTTCTGATTGC
AACATGAAAAAGCTCCGCAGCAGTCGCGTTCCTACCCTTCGGCCGCTTAA
ATTATCGTGGGAGCTATGGGGATCACCATTTGAAAAGTGTTGTAGCGCCG
TGATGGCAAATGTTGAGCAGCTCATATTCGGACGGGCGTTCAACCAGCCG
ATCGACGGGTTCGCTTGGCCGGCGTCACTTCAGAAACTAGTCTTTGGAGA
AGAATTCGACCAGCCGATCGAAGAGGTCGCGTGGCCGGCGTCCCTCCATC
AGCTTGTACTCGGACGGGCGTTCAACCATCCGATCGAGAGGGTCGCGTGG
CCTTCGTCTCTCCAGCACCTCACAATTGGATTTTCGTTCAACCAAGCAAT
CGACGGTGTCGCGTGGCCTTCGTCTCTCCAGCACCTCGACGGCAGTGGGT
GGTACACATCGACCTTGCAACTTCAGCTCGCGTCCCTACAACTTTGCGTG
CTTTGCAGGGGCGTTTCTACCTTGCATTTGACGACAACGTCTGGCGTGCC
GAGCTGGATGTGGAAGGGTTCTCCCGCTTCTGATTGCAACATGAAAAAGC
TCCGCAGCAGTCGCGTTCCTACCCTTCGGCCGCTTAAATTATCGTGGGAG
CTATGGGGATCACCATTTGAAAAGTGTTGTAGCGCCGTGATGGCAAATGT
TGAGCAGCTCATATTCGGACGGGCGTTCAACCAGCCGATCGACGGGTTCG
CTTGGCCGGCGTCACTTCAGAAACTAGTCTTTGGAGAAGAATTCGACCAG
CCGATCGAAGAGGTCGCGTGGCCGGCGTCCCTCCATCAGCTTGTACTCGG
ACGGGCGTTCAACCATCCGATCGAGAGGGTCGCGTGGCCTTCGTCTCTCC
AGCACCTCACAATTGGATTTTCGTTCAACCAAGCAATCGACGGTGTCGCG
TGGCCTTCGTCTCTCCAGCACCTC
back to top