mRNA_F-distichus_contig105907.503.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig105907.503.1
Unique NamemRNA_F-distichus_contig105907.503.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig105907.503.1 vs. uniprot
Match: A0A6H5KBR4_9PHAE (Protein CASP (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBR4_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 1.170e-16
Identity = 49/67 (73.13%), Postives = 56/67 (83.58%), Query Frame = 1 
Query:    1 KERRKIRNRMSAQQHRERQRQRVDTLEDCLRQRDAEMTKLKDEVSSLKTKNEYLTARVLQLEAEAGE 201
            KERRKIRNRMSAQQHRERQRQRVDTLEDCLR RD E+ KL+ +V+SL  +N+ L  RVLQLE+  GE
Sbjct:  231 KERRKIRNRMSAQQHRERQRQRVDTLEDCLRLRDNEIAKLEKQVASLTERNKELAERVLQLESVGGE 297
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BLAST of mRNA_F-distichus_contig105907.503.1 vs. uniprot
Match: D7FWU5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWU5_ECTSI)

HSP 1 Score: 52.0 bits (123), Expect = 4.390e-6
Identity = 29/47 (61.70%), Postives = 38/47 (80.85%), Query Frame = 1 
Query:   28 MSAQQHRERQRQRVDTLEDCLRQRDAEMTKLKDEVSSLKTKNEYLTA 168
            MSAQQHRERQRQRVDTLEDCLR RD E+ +L+ +++S  +  E ++A
Sbjct:    1 MSAQQHRERQRQRVDTLEDCLRLRDNEIARLEKQLASSSSSAEGVSA 47
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig105907.503.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KBR4_9PHAE1.170e-1673.13Protein CASP (Fragment) n=1 Tax=Ectocarpus sp. CCA... [more]
D7FWU5_ECTSI4.390e-661.70Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig105907contigF-distichus_contig105907:935..1890 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size201
Cds size174
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig105907.503.1prot_F-distichus_contig105907.503.1Fucus distichus monoicouspolypeptideF-distichus_contig105907 935..1863 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928985.0311453-CDS-F-distichus_contig105907:934..10061622928985.0311453-CDS-F-distichus_contig105907:934..1006Fucus distichus monoicousCDSF-distichus_contig105907 935..1006 -
1690885092.297006-CDS-F-distichus_contig105907:934..10061690885092.297006-CDS-F-distichus_contig105907:934..1006Fucus distichus monoicousCDSF-distichus_contig105907 935..1006 -
1622928985.0526407-CDS-F-distichus_contig105907:1761..18631622928985.0526407-CDS-F-distichus_contig105907:1761..1863Fucus distichus monoicousCDSF-distichus_contig105907 1762..1863 -
1690885092.3072712-CDS-F-distichus_contig105907:1761..18631690885092.3072712-CDS-F-distichus_contig105907:1761..1863Fucus distichus monoicousCDSF-distichus_contig105907 1762..1863 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928985.070936-UTR-F-distichus_contig105907:1863..18901622928985.070936-UTR-F-distichus_contig105907:1863..1890Fucus distichus monoicousUTRF-distichus_contig105907 1864..1890 -
1690885092.3192153-UTR-F-distichus_contig105907:1863..18901690885092.3192153-UTR-F-distichus_contig105907:1863..1890Fucus distichus monoicousUTRF-distichus_contig105907 1864..1890 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig105907.503.1

>prot_F-distichus_contig105907.503.1 ID=prot_F-distichus_contig105907.503.1|Name=mRNA_F-distichus_contig105907.503.1|organism=Fucus distichus monoicous|type=polypeptide|length=58bp
MSAQQHRERQRQRVDTLEDCLRQRDAEMTKLKDEVSSLKTKNEYLTARVL
QLEAEAGE
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mRNA from alignment at F-distichus_contig105907:935..1890-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig105907.503.1 ID=mRNA_F-distichus_contig105907.503.1|Name=mRNA_F-distichus_contig105907.503.1|organism=Fucus distichus monoicous|type=mRNA|length=956bp|location=Sequence derived from alignment at F-distichus_contig105907:935..1890- (Fucus distichus monoicous)
AAGGAGAGGAGAAAAATCCGAAACCGCATGAGCGCGCAGCAGCATCGGGA
AAGACAGAGACAGCGGGTGGACACTTTGGAGGACTGCCTCCGACAGAGGG
ACGCCGAGATGACCAAGCTGAAGGATGAGGTGGATACTGTTTGCAGGGTG
CAGTACTGTAGATAACGTACATAATTGACAGATTCACAACAAGTTCAATT
GTACCGCAGGTAACCTTCATGTTAACATATTTTTTAGCCCCCAATGGAGA
GGTGGGGTTTTATCGACCGGGGATGGTTTACAAAGAGTTGGTTACGTGGG
GTGCTCGGCAGGCTTTTGAGAGGGTCGGCATCAGCAGGCTGACGAGAAGA
GTAATTTAATTGTACGGAGTCTCACAGGGAAGATCTAGCATGAAATACTG
TAGTTTACGACAGCAGTAGGAGACAAAGAGAAAAAATAATAAATTTGGCG
TTTTTGGTGGATAGAAAAAATACCGGTTCAAGACTCAGCATCAAGAATCA
CAGCTCAGCAAAAAAAAAATAAGGCAAGAAAACTCCACAGGGGACTTGAA
AGATGAAGGCCATTTTGGTTGTCTCGTGTCTTGTTTTCGCTCTTCCGAGT
TCCAAAACCTAAAGAACCCCCCCCCCTGTCAGCGAAAAACGCCAACTTTT
CTGTACAAGTAAAACACACGCTTTTGGCGCATTGAGTCCTTATTTTTCCT
CGCCCTTGCACCAATGGAAAAAAAACAAATAACATTGACGGACAACACAA
AAAAGTACAAACACGCCCCACCATGGTAAAAAATCTCTCCCCCCCCCATA
TAACTTTGAAATCAGCCTCTTTTTGAGCACCGTTTCTAACAGATCCGCGA
CCCATTCCTCCTCCTGGATAAACGCCTTCAACAGGTTTCATCCTTAAAAA
CAAAAAATGAGTACCTGACCGCGCGCGTGCTCCAGCTGGAGGCGGAGGCG
GGTGAG
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Coding sequence (CDS) from alignment at F-distichus_contig105907:935..1890-

>mRNA_F-distichus_contig105907.503.1 ID=mRNA_F-distichus_contig105907.503.1|Name=mRNA_F-distichus_contig105907.503.1|organism=Fucus distichus monoicous|type=CDS|length=348bp|location=Sequence derived from alignment at F-distichus_contig105907:935..1890- (Fucus distichus monoicous)
ATGAGCGCGCAGCAGCATCGGGAAAGACAGAGACAGCGGGTGGACACTTT
GGAGGACTGCCTCCGACAGAGGGACGCCGAGATGACCAAGCTGAAGGATG
AGATGAGCGCGCAGCAGCATCGGGAAAGACAGAGACAGCGGGTGGACACT
TTGGAGGACTGCCTCCGACAGAGGGACGCCGAGATGACCAAGCTGAAGGA
TGAGGTTTCATCCTTAAAAACAAAAAATGAGTACCTGACCGCGCGCGTGC
TCCAGCTGGAGGCGGAGGCGGGTGAGGTTTCATCCTTAAAAACAAAAAAT
GAGTACCTGACCGCGCGCGTGCTCCAGCTGGAGGCGGAGGCGGGTGAG
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