prot_F-distichus_contig9810.19250.1 (polypeptide) Fucus distichus monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-distichus_contig9810.19250.1
Unique Nameprot_F-distichus_contig9810.19250.1
Typepolypeptide
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Sequence length211
Homology
BLAST of mRNA_F-distichus_contig9810.19250.1 vs. uniprot
Match: A0A2P6RCF4_ROSCH (Putative RNA-directed DNA polymerase n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6RCF4_ROSCH)

HSP 1 Score: 159 bits (402), Expect = 2.260e-41
Identity = 83/212 (39.15%), Postives = 132/212 (62.26%), Query Frame = 0
Query:    1 MDGQIARGVWKVVDPLKGKTVLGTKIVFKRKVGQDGRVEKYKCRFVAKSFRQIKGIHDQESSSPTPTQSSIRMALAVMALLDWEERQLDVEMAFLEADVKEELYVELPDGYRDS--PNQVERLQKAMYGLMHAGLLWSKKYSGELIAKGFERSQADPCVFRRKHLGKVVVIIVGYVDDLLVLSETKQDEHQALKDLRSNFPIKDLGEISYYL 210
            +D  + +G W++V   K K ++G+K ++K K   DG + +YK R VA+ F Q KG+   E+ SP    S++R+ +A+ A+  WE RQLDV+ AFL  D++EE+Y+  P G+ DS  P+ V  L+K++YGL  A   W++K++  L A GF+ S  DP +F  KH  K V+I++ YVDD+++    K+     + +L   F +KDLG +SY+L
Sbjct:  653 IDALLKQGTWELVPLPKAKNIVGSKWIYKIKKNPDGSISRYKARLVAQGFSQEKGLDYDETFSPVVRHSTVRLVVALAAMNKWELRQLDVKNAFLHGDLREEVYMVQPQGFVDSKHPDHVCLLKKSLYGLKQAPRAWNEKFTNFLPALGFQFSHYDPSLFV-KHSEKGVIILLLYVDDIVITGSDKESIEAVITELSEAFDMKDLGSLSYFL 863          
BLAST of mRNA_F-distichus_contig9810.19250.1 vs. uniprot
Match: A0A0C3AKI0_9AGAM (Uncharacterized protein (Fragment) n=1 Tax=Serendipita vermifera MAFF 305830 TaxID=933852 RepID=A0A0C3AKI0_9AGAM)

HSP 1 Score: 153 bits (386), Expect = 3.230e-39
Identity = 72/204 (35.29%), Postives = 130/204 (63.73%), Query Frame = 0
Query:    3 GQIAR-GVWKVVDPLKGKTVLGTKIVFKRKVGQDGRVEKYKCRFVAKSFRQIKGIHDQESSSPTPTQSSIRMALAVMALLDWEERQLDVEMAFLEADVKEELYVELPDGYRDSPNQVERLQKAMYGLMHAGLLWSKKYSGELIAKGFERSQADPCVFRRKHLGKVVVIIVGYVDDLLVLSETKQDEHQALKDLRSNFPIKDLGE 205
            GQ+ + G W++ +P + + ++G++ VF +K  + G+V +YK R VA+ F QI G+   ++ SP     ++R  +A+ A+ DWE RQ+D++ A+L  +++EE+++E P+G+ D   +V RL+  +YGL  AG +W+KK + +L   GF R+ ADPCV+     GK+ ++ V +VDD+++  +++      +  L+  F +KDLGE
Sbjct:  879 GQLMQMGTWELDEPDEERKLVGSRWVFAKKYDEHGKVNQYKARLVAQGFSQIPGVDYTDNYSPVVRLDAVRACIALSAIKDWEMRQIDIKGAYLNGELEEEIFMEQPEGFNDGSGRVCRLKLPLYGLKQAGRMWNKKLNAQLTTLGFNRTNADPCVYYNNQDGKITILTV-WVDDIILCGDSESRIDTTVSALKKIFEVKDLGE 1081          
BLAST of mRNA_F-distichus_contig9810.19250.1 vs. uniprot
Match: A0A2I0J8X0_PUNGR (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Punica granatum TaxID=22663 RepID=A0A2I0J8X0_PUNGR)

HSP 1 Score: 144 bits (363), Expect = 2.180e-38
Identity = 79/212 (37.26%), Postives = 124/212 (58.49%), Query Frame = 0
Query:    1 MDGQIARGVWKVVDPLKGKTVLGTKIVFKRKVGQDGRVEKYKCRFVAKSFRQIKGIHDQESSSPTPTQSSIRMALAVMALLDWEERQLDVEMAFLEADVKEELYVELPDGYRD--SPNQVERLQKAMYGLMHAGLLWSKKYSGELIAKGFERSQADPCVFRRKHLGKVVVIIVGYVDDLLVLSETKQDEHQALKDLRSNFPIKDLGEISYYL 210
            M+      VW +VDP +G  ++G K VFK+K   DG V  +K R VAK FRQ+ G+   E+ SP     SIR+ LA+ A  D+E  Q+DV+ AFL  ++ E++Y+  P+G+ D  S  +V +LQ+++YGL  A   W+ ++   +   GF +++ +PCV++ K  G +V+ +V YVDD+L++             L   F +KDLGE +Y L
Sbjct:   95 MESMYTNQVWTLVDPPEGAKLIGYKWVFKKKTDMDGNVITFKRRLVAKGFRQVHGVDYDETFSPVAMLKSIRILLAIAAYYDYEIWQMDVKTAFLNGNLLEDVYMTQPEGFVDPHSAEKVCKLQRSIYGLKQASRSWNFRFDDAIKEFGFNKNEDEPCVYK-KVSGSIVIFLVLYVDDILLIGNDIPSLQSVKTWLGRCFSMKDLGEATYVL 305          
BLAST of mRNA_F-distichus_contig9810.19250.1 vs. uniprot
Match: A0A6D2KD17_9BRAS (Uncharacterized protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2KD17_9BRAS)

HSP 1 Score: 150 bits (378), Expect = 3.800e-38
Identity = 82/211 (38.86%), Postives = 122/211 (57.82%), Query Frame = 0
Query:    2 DGQIARGVWKVVDPLKGKTVLGTKIVFKRKVGQDGRVEKYKCRFVAKSFRQIKGIHDQESSSPTPTQSSIRMALAVMALLDWEERQLDVEMAFLEADVKEELYVELPDGY--RDSPNQVERLQKAMYGLMHAGLLWSKKYSGELIAKGFERSQADPCVFRRKHLGKVVVIIVGYVDDLLVLSETKQDEHQALKDLRSNFPIKDLGEISYYL 210
            D QIA   W +V P   + V+ TK +++ K   DG ++KYK R VA+ F Q +G+  +E+ SP    +S RM L +    +W  RQLDV  AFL+  + EE+YV+ P G+   D P+ V +L+KA+YGL  A   W  +    L+  GF+ S AD C+F  +H  KV V ++ YVDD++V         + + DL + F +KD GE+SY+L
Sbjct:  819 DAQIAHRSWDLVPPSPTQNVIDTKWIYRIKYFSDGLLDKYKSRLVARGFNQQEGVDFEETYSPVIKSTSTRMVLKIAVCKNWRLRQLDVNNAFLQGTLDEEVYVKQPPGFVDPDRPDYVCKLRKALYGLKQAPRAWYLELKRYLVDVGFKNSLADTCLFILQH-HKVFVYVLVYVDDIIVTGNNNDAVEKVITDLSTRFSVKDQGELSYFL 1028          
BLAST of mRNA_F-distichus_contig9810.19250.1 vs. uniprot
Match: A0A0A9WI29_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9WI29_LYGHE)

HSP 1 Score: 145 bits (365), Expect = 4.410e-38
Identity = 75/202 (37.13%), Postives = 126/202 (62.38%), Query Frame = 0
Query:    9 VWKVVDPLKGKTVLGTKIVFKRKVGQDGRVEKYKCRFVAKSFRQIKGIHDQESSSPTPTQSSIRMALAVMALLDWEERQLDVEMAFLEADVKEELYVELPDGYRDSPNQVERLQKAMYGLMHAGLLWSKKYSGELIAKGFERSQADPCVFRRKHLGKVVVIIVGYVDDLLVLSETKQDEHQALKDLRSNFPIKDLGEISYYL 210
            VW+  +   GKT +G+K VFK K   DG VE+YK R VA+ F Q  G+  +E+ SP  +  +IR+   +    +W   Q+DV+ A+L  ++KEE+Y++ PDG   +  +V RL +++YGL  +G  W +K   +L+  G  + +++PC++ R+    V +I+V YVDDL+++S +++   +  + LR NF +KDLGE++Y L
Sbjct:   57 VWEFTELPPGKTAIGSKWVFKIKYMADGTVERYKARLVAQGFTQKPGVDYEETYSPVISLPAIRLLFKLAVNNNWIIHQMDVKTAYLNGELKEEIYMKCPDGITGAEGKVCRLLRSLYGLKQSGRSWYEKLDEKLLEGGMNKCKSEPCIYYRRCNENVKIILV-YVDDLILISSSEECMVEMKEMLRRNFDMKDLGELNYIL 257          
BLAST of mRNA_F-distichus_contig9810.19250.1 vs. uniprot
Match: Q8H7X8_ORYSJ (Retrotransposon protein, putative, Ty1-copia subclass n=2 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q8H7X8_ORYSJ)

HSP 1 Score: 148 bits (373), Expect = 1.770e-37
Identity = 80/203 (39.41%), Postives = 124/203 (61.08%), Query Frame = 0
Query:   10 WKVVDPLKGKTVLGTKIVFKRKVGQDGRVEKYKCRFVAKSFRQIKGIHDQESSSPTPTQSSIRMALAVMALLDWEERQLDVEMAFLEADVKEELYVELPDGYRDS--PNQVERLQKAMYGLMHAGLLWSKKYSGELIAKGFERSQADPCVFRRKHLGKVVVIIVGYVDDLLVLSETKQDEHQALKDLRSNFPIKDLGEISYYL 210
            W +V P KG+ V+  K V+K K  QDG +++YK R VAK F+Q  GI  +++ SP    ++IR+ L++     W  RQLDV+ AFL   ++EE+Y++ P GY DS  P  V +L KA+YGL  A   W  + S +L   GF+ S+AD  +F     G +++ ++ YVDD++V S  ++     L+DL+  F +KDLG++ Y+L
Sbjct:  768 WHLVPPQKGRNVIDCKWVYKIKRKQDGSLDRYKARLVAKGFKQRYGIDYEDTFSPVVKAATIRIILSIAVSKGWCMRQLDVQNAFLHGVLEEEVYMKQPPGYEDSSLPGYVCKLDKALYGLKQAPRAWYSRLSKKLYDMGFQGSKADTSLFFYNK-GDLIIFVLIYVDDIIVTSSRQEAVPALLRDLQKEFALKDLGDLHYFL 969          
BLAST of mRNA_F-distichus_contig9810.19250.1 vs. uniprot
Match: Q6F356_ORYSJ (Putative polyprotein n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q6F356_ORYSJ)

HSP 1 Score: 147 bits (372), Expect = 2.410e-37
Identity = 81/203 (39.90%), Postives = 124/203 (61.08%), Query Frame = 0
Query:   10 WKVVDPLKGKTVLGTKIVFKRKVGQDGRVEKYKCRFVAKSFRQIKGIHDQESSSPTPTQSSIRMALAVMALLDWEERQLDVEMAFLEADVKEELYVELPDGYRDS--PNQVERLQKAMYGLMHAGLLWSKKYSGELIAKGFERSQADPCVFRRKHLGKVVVIIVGYVDDLLVLSETKQDEHQALKDLRSNFPIKDLGEISYYL 210
            W +V P KG+ ++  K V+K K  QDG +++YK R VAK F+Q  GI  +++ SP    ++IR+ L++     W  RQLDV+ AFL   ++EE+Y++ P GY D   P+ V +L KA+YGL  A   W  K S +L   GF+ S+AD  +F     G ++ ++V YVDD++V S  +      LKDL+ +F +KDLG++ Y+L
Sbjct:  777 WHLVPPQKGRNIIDYKWVYKIKRKQDGSLDRYKARLVAKGFKQRYGIDYEDTFSPVVKAATIRIILSIAVSRGWTLRQLDVQNAFLHGILEEEVYMKQPPGYEDKVHPDYVCKLDKALYGLKQAPRAWYAKLSQKLQHLGFQGSKADTSLFFYNKGGLIIFVLV-YVDDIIVASSRQDAVPALLKDLQKDFALKDLGDLHYFL 978          
BLAST of mRNA_F-distichus_contig9810.19250.1 vs. uniprot
Match: A0A438DKE2_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=2 Tax=Vitis vinifera TaxID=29760 RepID=A0A438DKE2_VITVI)

HSP 1 Score: 145 bits (365), Expect = 2.860e-37
Identity = 83/214 (38.79%), Postives = 130/214 (60.75%), Query Frame = 0
Query:    1 MDGQIARGVWKVVDPLKGKTVLGTKIVFKRKVGQDGRVEKYKCRFVAKSFRQIKGIHDQESSSPTPTQSSIRMALAVMALLDWEERQLDVEMAFLEADVKEELYVELPDGYRDS--PNQVERLQKAMYGLMHAGLLWSKKYSGELIAKGFERSQADPCVFRRK-HLGKVVVIIVGYVDDLLVLSETKQDEHQALKD-LRSNFPIKDLGEISYYL 210
            +D     G W + D   GK  +G K +F  K   DG VE++K R VA+ F Q  GI  QE+ +P    ++IR+ L++    DW  +QLD++ AFL  D++EE+Y+E+P G+ +S   NQV +LQK++YGL  +   W  +++  ++  G+++ QAD  +F +K H GK+ ++IV YVDD+ +LS    +E Q LK  L   F +KDLG + Y+L
Sbjct:   52 IDALEKNGTWTITDLPVGKRPVGCKWIFTIKYKADGSVERFKARLVARGFTQSYGIDYQETFAPVAKLNTIRILLSLAVNQDWCLQQLDIKNAFLNGDLEEEVYMEIPPGFEESMAKNQVCKLQKSLYGLKQSPRAWFDRFTKAVLKLGYKQGQADHTLFVKKSHAGKMAILIV-YVDDI-ILSGNDMEELQNLKKYLSEEFEVKDLGNLKYFL 263          
BLAST of mRNA_F-distichus_contig9810.19250.1 vs. uniprot
Match: Q6ATL7_ORYSJ (Retrotransposon protein, putative, Ty1-copia subclass n=3 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q6ATL7_ORYSJ)

HSP 1 Score: 147 bits (371), Expect = 3.340e-37
Identity = 80/208 (38.46%), Postives = 127/208 (61.06%), Query Frame = 0
Query:    5 IARGVWKVVDPLKGKTVLGTKIVFKRKVGQDGRVEKYKCRFVAKSFRQIKGIHDQESSSPTPTQSSIRMALAVMALLDWEERQLDVEMAFLEADVKEELYVELPDGYRD--SPNQVERLQKAMYGLMHAGLLWSKKYSGELIAKGFERSQADPCVFRRKHLGKVVVIIVGYVDDLLVLSETKQDEHQALKDLRSNFPIKDLGEISYYL 210
            I    W +V P +G+ V+  K V+K K  QDG +++YK R VAK F+Q  GI  +++ SP    ++IR+ L++     W  RQLDV+ AFL   ++EE+Y++ P GY +  +P+ V +L KA+YGL  A   W  + SG+L   GF+ S+AD  +F     G + + ++ YVDD++V+S  K+     L+DL+  F +KDLG++ Y+L
Sbjct:  947 IKNNTWHLVPPQQGRNVIDCKWVYKIKRKQDGSLDRYKARLVAKGFKQRYGIDYEDTFSPVVKAATIRIILSIAVSRGWCLRQLDVQNAFLHGVLEEEVYMKQPPGYENPSTPDYVCKLDKALYGLKQAPRAWYSRLSGKLHDLGFKGSKADTSLFFYNK-GSLTIFLLIYVDDIIVVSSRKEAVSALLQDLQKEFALKDLGDLHYFL 1153          
BLAST of mRNA_F-distichus_contig9810.19250.1 vs. uniprot
Match: A0A061F8M9_THECC (Cysteine-rich RLK (RECEPTOR-like protein kinase) 8 n=1 Tax=Theobroma cacao TaxID=3641 RepID=A0A061F8M9_THECC)

HSP 1 Score: 145 bits (367), Expect = 4.350e-37
Identity = 81/210 (38.57%), Postives = 123/210 (58.57%), Query Frame = 0
Query:    8 GVWKVVDPLKGKTVLGTKIVFKRKVGQDGRVEKYKCRFVAKSFRQIKGIHDQESSSPTPTQSSIRMALAVMALLDWEERQLDVEMAFLEADVKEELYVELPDGY---RDSPNQ---VERLQKAMYGLMHAGLLWSKKYSGELIAKGFERSQADPCVFRRK-HLGKVVVIIVGYVDDLLVLSETKQDEHQALKDLRSNFPIKDLGEISYYL 210
            G W +V        +G K V+K K+  DG+VE+YK R VAK + QI+G   QE+ SP   Q+ +RM  A+ A  +W   QLD+  AFL  ++ EE+Y+ELP GY   R+ P     V +L K++YGL  A   W+ K +  ++  GF++S +D  +F  K H G  + ++V YVDD+L+ S + Q ++     L S F +KDLG++ Y+L
Sbjct:  187 GTWSIVQLPSNYHAVGCKWVYKVKLNADGKVERYKARLVAKGYNQIEGFDYQETFSPVARQTIVRMFFALAAAQNWRLSQLDINNAFLNGELTEEVYMELPQGYTFKREYPTSSRLVCKLHKSLYGLKQASRAWNSKLTTSVLKYGFKQSNSDYSLFTMKTHNGDFIALLV-YVDDILIASSSIQAKNDVKGYLSSEFKLKDLGKVKYFL 395          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig9810.19250.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2P6RCF4_ROSCH2.260e-4139.15Putative RNA-directed DNA polymerase n=1 Tax=Rosa ... [more]
A0A0C3AKI0_9AGAM3.230e-3935.29Uncharacterized protein (Fragment) n=1 Tax=Serendi... [more]
A0A2I0J8X0_PUNGR2.180e-3837.26Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6D2KD17_9BRAS3.800e-3838.86Uncharacterized protein n=1 Tax=Microthlaspi errat... [more]
A0A0A9WI29_LYGHE4.410e-3837.13Retrovirus-related Pol polyprotein from transposon... [more]
Q8H7X8_ORYSJ1.770e-3739.41Retrotransposon protein, putative, Ty1-copia subcl... [more]
Q6F356_ORYSJ2.410e-3739.90Putative polyprotein n=1 Tax=Oryza sativa subsp. j... [more]
A0A438DKE2_VITVI2.860e-3738.79Retrovirus-related Pol polyprotein from transposon... [more]
Q6ATL7_ORYSJ3.340e-3738.46Retrotransposon protein, putative, Ty1-copia subcl... [more]
A0A061F8M9_THECC4.350e-3738.57Cysteine-rich RLK (RECEPTOR-like protein kinase) 8... [more]

Pages

back to top
InterPro
Analysis Name: OGS1.0 of Fucus distichus monoicous
Date Performed: 2021-02-24
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 9..210
e-value: 2.3E-43
score: 148.6
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 5..210
NoneNo IPR availablePANTHERPTHR11439:SF267coord: 5..210

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 9..210
e-value: 2.3E-43
score: 148.6
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 5..210
NoneNo IPR availablePANTHERPTHR11439:SF267coord: 5..210

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig9810contigF-distichus_contig9810:9131..9763 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Fucus distichus monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig9810.19250.1mRNA_F-distichus_contig9810.19250.1Fucus distichus monoicousmRNAF-distichus_contig9810 8307..9856 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-distichus_contig9810.19250.1 ID=prot_F-distichus_contig9810.19250.1|Name=mRNA_F-distichus_contig9810.19250.1|organism=Fucus distichus monoicous|type=polypeptide|length=211bp
MDGQIARGVWKVVDPLKGKTVLGTKIVFKRKVGQDGRVEKYKCRFVAKSF
RQIKGIHDQESSSPTPTQSSIRMALAVMALLDWEERQLDVEMAFLEADVK
EELYVELPDGYRDSPNQVERLQKAMYGLMHAGLLWSKKYSGELIAKGFER
SQADPCVFRRKHLGKVVVIIVGYVDDLLVLSETKQDEHQALKDLRSNFPI
KDLGEISYYL*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR039537Retrotran_Ty1/copia-like