prot_F-distichus_contig1067.573.1 (polypeptide) Fucus distichus monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-distichus_contig1067.573.1
Unique Nameprot_F-distichus_contig1067.573.1
Typepolypeptide
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Sequence length1048
Homology
BLAST of mRNA_F-distichus_contig1067.573.1 vs. uniprot
Match: D8LDM1_ECTSI (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDM1_ECTSI)

HSP 1 Score: 177 bits (449), Expect = 1.090e-41
Identity = 93/121 (76.86%), Postives = 101/121 (83.47%), Query Frame = 0
Query:    1 MHRG-HGPMRPGEVMLLITNLNYEVDLHMLAEEFGTCGAVMRCRIINGPDGRSRGTAFVSYGEKSSADRAISKYHDRLFRGRKLQVTFSSLRDEKRELALSTNPARNGMGGR--GPFGPMG 118
            +HRG  GP RPGEV LLI+NL+YEV L +LA EF TCGAVMRCRIINGPDGRSRG AFVS+GEKSSADRAISKYHDRLFRGRKLQVT SS  DE+RELA+ST   +NG GG   GP GPMG
Sbjct:   41 LHRGIDGPPRPGEVKLLISNLHYEVSLDLLASEFSTCGAVMRCRIINGPDGRSRGVAFVSFGEKSSADRAISKYHDRLFRGRKLQVTISSKNDERRELAMSTVHPKNGGGGMMGGPMGPMG 161          
BLAST of mRNA_F-distichus_contig1067.573.1 vs. uniprot
Match: A0A0F7SBQ4_9BASI (Uncharacterized protein n=1 Tax=Sporisorium scitamineum TaxID=49012 RepID=A0A0F7SBQ4_9BASI)

HSP 1 Score: 65.1 bits (157), Expect = 4.850e-7
Identity = 45/115 (39.13%), Postives = 61/115 (53.04%), Query Frame = 0
Query:   15 LLITNLNYEVDLHMLAEEFGTCGAVMRCRIINGPDGRSRGTAFVSYGEKSSADRAISKYHDRLFRGRKLQVTFSSLRDEKRELALSTNPARNGMGGRGPFGPMGGPLARPMGGRG 129
            L ++NL Y+V    L + F + G+V R  +  GPDGRS+GT  V++G  + A  AI+ YH   FRGR L+V     R +K   A   +P      GRG +GP       P GGRG
Sbjct:  206 LFVSNLPYDVSWQDLKDLFRSAGSVTRADVNMGPDGRSKGTGIVAFGNSNDASNAIAMYHGYDFRGRMLEV-----RLDKFAGAPPMDPY-----GRGGYGPP------PRGGRG 304          
BLAST of mRNA_F-distichus_contig1067.573.1 vs. uniprot
Match: E7A1X7_SPORE (Related to HRB1-Poly(A+) RNA-binding protein, involved in the export of mRNAs from the nucleus to the cytoplasm n=3 Tax=Sporisorium TaxID=63265 RepID=E7A1X7_SPORE)

HSP 1 Score: 62.0 bits (149), Expect = 4.580e-6
Identity = 31/71 (43.66%), Postives = 43/71 (60.56%), Query Frame = 0
Query:   15 LLITNLNYEVDLHMLAEEFGTCGAVMRCRIINGPDGRSRGTAFVSYGEKSSADRAISKYHDRLFRGRKLQV 85
            L ++NL Y+V    L + F + G V R  +  GPDGRS+GT  V++G  + A  AI+ YH   FRGR L+V
Sbjct:  213 LFVSNLPYDVSWQDLKDLFRSAGNVTRADVNMGPDGRSKGTGIVAFGNSNDASNAIAMYHGYDFRGRMLEV 283          
BLAST of mRNA_F-distichus_contig1067.573.1 vs. uniprot
Match: UPI000444A05D (RNA-binding domain-containing protein n=1 Tax=Stereum hirsutum (strain FP-91666) TaxID=721885 RepID=UPI000444A05D)

HSP 1 Score: 57.0 bits (136), Expect = 1.840e-5
Identity = 32/78 (41.03%), Postives = 48/78 (61.54%), Query Frame = 0
Query:   15 LLITNLNYEVDLHMLAEEFGTCGAVMRCRII---NGP-DGRSRGTAFVSYGEKSSADRAISKYHDRLFRGRKLQVTFS 88
            L + NL++ VD H L + F   G +     +   +GP  G+ RG AFV Y + + A+RA++K HD+L RGR+L VTF+
Sbjct:   47 LYVGNLSHSVDEHALIQIFSKFGKLSNLDYLFHKSGPLKGKPRGYAFVEYVDPADAERALTKAHDKLLRGRRLVVTFA 124          
BLAST of mRNA_F-distichus_contig1067.573.1 vs. uniprot
Match: A0A7C8IRB4_9PEZI (Uncharacterized protein n=1 Tax=Xylaria multiplex TaxID=323545 RepID=A0A7C8IRB4_9PEZI)

HSP 1 Score: 56.2 bits (134), Expect = 7.250e-5
Identity = 30/91 (32.97%), Postives = 50/91 (54.95%), Query Frame = 0
Query:   15 LLITNLNYEVDLHMLAEEFGTCGAVMRCRIINGPDGRSRGTAFVSYGEKSSADRAISKYHDRLFRGRKLQVTFSSLRDEKRELALSTNPAR 105
            + I+N+ ++     L E FG  G ++ C I     G SRG  F+++G+K SA+RA+S+ H+  + GR++ V      D ++E   S N  R
Sbjct:   56 IFISNMTFDATEAHLQEAFGKYGDILACNIGRDGRGLSRGFGFITFGDKESANRAVSEAHNSFWHGRRIMV------DHRKEGPSSGNKRR 140          
BLAST of mRNA_F-distichus_contig1067.573.1 vs. uniprot
Match: A0A5C2SPV4_9APHY (RNA-binding domain-containing protein n=2 Tax=Lentinus tigrinus TaxID=5365 RepID=A0A5C2SPV4_9APHY)

HSP 1 Score: 57.0 bits (136), Expect = 8.010e-5
Identity = 32/79 (40.51%), Postives = 48/79 (60.76%), Query Frame = 0
Query:   15 LLITNLNYEVDLHMLAEEFGTCGAVMRCRII---NGP-DGRSRGTAFVSYGEKSSADRAISKYHDRLFRGRKLQVTFSS 89
            L + NL+  VD + L + F   G + +   +   +GP  G+ RG AFV YG K  A+RA++  HD+L RGRKL VT+++
Sbjct:   60 LYVGNLHPSVDEYTLLQVFSKFGKISKLDYLFHKSGPLRGKPRGYAFVEYGSKDDAERALTHAHDKLLRGRKLVVTYAN 138          
BLAST of mRNA_F-distichus_contig1067.573.1 vs. uniprot
Match: UPI001C7A10A2 (uncharacterized protein n=1 Tax=Marasmius oreades TaxID=181124 RepID=UPI001C7A10A2)

HSP 1 Score: 56.2 bits (134), Expect = 9.530e-5
Identity = 32/78 (41.03%), Postives = 47/78 (60.26%), Query Frame = 0
Query:   15 LLITNLNYEVDLHMLAEEFGTCGAVMRCRII---NGP-DGRSRGTAFVSYGEKSSADRAISKYHDRLFRGRKLQVTFS 88
            + I NL+  VD + L + F   G V +   +   +GP  G+ RG AFV Y +K  A +A++  HD+LFRGRKL VT++
Sbjct:   36 IYIGNLHPSVDEYSLLQLFSKYGKVTKLDFLFHKSGPLKGKPRGYAFVEYADKDEAQKALASAHDKLFRGRKLVVTYA 113          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig1067.573.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D8LDM1_ECTSI1.090e-4176.86RRM domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A0F7SBQ4_9BASI4.850e-739.13Uncharacterized protein n=1 Tax=Sporisorium scitam... [more]
E7A1X7_SPORE4.580e-643.66Related to HRB1-Poly(A+) RNA-binding protein, invo... [more]
UPI000444A05D1.840e-541.03RNA-binding domain-containing protein n=1 Tax=Ster... [more]
A0A7C8IRB4_9PEZI7.250e-532.97Uncharacterized protein n=1 Tax=Xylaria multiplex ... [more]
A0A5C2SPV4_9APHY8.010e-540.51RNA-binding domain-containing protein n=2 Tax=Lent... [more]
UPI001C7A10A29.530e-541.03uncharacterized protein n=1 Tax=Marasmius oreades ... [more]
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InterPro
Analysis Name: OGS1.0 of Fucus distichus monoicous
Date Performed: 2021-02-24
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 14..86
e-value: 4.7E-17
score: 72.6
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 15..83
e-value: 4.2E-14
score: 52.1
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 13..90
score: 14.505
IPR003954RNA recognition motif domain, eukaryoteSMARTSM00361rrm2_1coord: 14..86
e-value: 0.0095
score: 25.1
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 9..96
e-value: 2.2E-17
score: 65.0
NoneNo IPR availablePANTHERPTHR19965:SF35POLYMERASE DELTA-INTERACTING PROTEIN 3coord: 10..90
NoneNo IPR availablePANTHERPTHR19965RNA AND EXPORT FACTOR BINDING PROTEINcoord: 10..90
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 10..96

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 14..86
e-value: 4.7E-17
score: 72.6
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 15..83
e-value: 4.2E-14
score: 52.1
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 13..90
score: 14.505
IPR003954RNA recognition motif domain, eukaryoteSMARTSM00361rrm2_1coord: 14..86
e-value: 0.0095
score: 25.1
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 9..96
e-value: 2.2E-17
score: 65.0
NoneNo IPR availablePANTHERPTHR19965:SF35POLYMERASE DELTA-INTERACTING PROTEIN 3coord: 10..90
NoneNo IPR availablePANTHERPTHR19965RNA AND EXPORT FACTOR BINDING PROTEINcoord: 10..90
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 10..96

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig1067contigF-distichus_contig1067:9611..16330 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Fucus distichus monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig1067.573.1mRNA_F-distichus_contig1067.573.1Fucus distichus monoicousmRNAF-distichus_contig1067 9602..21404 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-distichus_contig1067.573.1 ID=prot_F-distichus_contig1067.573.1|Name=mRNA_F-distichus_contig1067.573.1|organism=Fucus distichus monoicous|type=polypeptide|length=1048bp
MHRGHGPMRPGEVMLLITNLNYEVDLHMLAEEFGTCGAVMRCRIINGPDG
RSRGTAFVSYGEKSSADRAISKYHDRLFRGRKLQVTFSSLRDEKRELALS
TNPARNGMGGRGPFGPMGGPLARPMGGRGMMPMGVVPPGVGGRGPMGPGP
LLPGPMMGGRGPGGPGSGVGGRGMMGPGRGPMGPPGPRGPIGPNGPGPIG
PNGPGPMGPNGPGPMGPGGPGPIGPMAPMGDGLGPGGPIGPGGPLGPGGA
VMGPGGDGMGPGPRGPALLGAGRGSLGLGRGRGRGPGSANMPGRGGRGGG
PGGPRGLGGPLMGGRGGVAGRGPRGGPGMMGPGMGGRGPGGPPFMGPGGT
PRGPIGGRGVPAGPMGARAMEMGAGAGDMDGMDGLERIDGRPVGGRMGGR
GGGGMVPGGRGGAGWDDYGLGAGDAYMEPSDRTVGGVAGGVRGGHGRGML
GPVGQGGGGPQGLDRGMDIDGHDMGPGGAGGSNFIGRDPSVNMRGRGDHG
LRGRGGGDMGGQTDAMRGGYVDRAGSWGGESAGDRRGPHGPSEYNHHLGD
GGMRGGAGGGAGGGAYDAHDDYASERGDGGFHRDRDGYNGGDARGGYSQN
ARDGGSMRGGGATYEGGESRAVTDGGRVGYGTGTDQGGAYGARGRDAGYG
SEYDGARGGGVSRGGGYDDESVGYAYGNSGASYRGGSTAVEGGGVGAGGG
GGGGGATSDRYSGDYGRSGGQASGSSYRDRAVDTSAGYGGGNGYQGEGEG
GRGGGYGQTEGGGGAYRSGGYDQGYSTNGAGGGRSGQQSGSGKADGQYAS
TGSSYDAGNVDGRFDDGRGNGHSTGAGGGDGYGSSRGDPGNSAYGVSSGG
GGNVGGDTYQSGGASYSQDSSARMPQGSLYGSQQQQQGYDKPSAGSGAGG
ISGGRPSGSQAVDPTPAKATSYADNDYSSSSAQYRSGGYGDQISSAGYGS
ASGGGGNNDAQGSYAGDSGTGASGTAANGFSPGQYSQGADASADDYWSRG
GGGAGSSGRSYTAEASTRGSSGQYTNTSEPVRGGGSVGGGGQGSYAW*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR003954RRM_dom_euk
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf