prot_F-distichus_contig10627.535.1 (polypeptide) Fucus distichus monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_F-distichus_contig10627.535.1
Unique Name	prot_F-distichus_contig10627.535.1
Type	polypeptide
Organism	Fucus distichus monoicous (Fucus distichus monoicous)
Sequence length	772

Homology

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BLAST of mRNA_F-distichus_contig10627.535.1 vs. uniprot
Match: D8LCE2_ECTSI (Nuclear pore complex protein Nup85 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCE2_ECTSI)

HSP 1 Score: 649 bits (1673), Expect = 1.130e-220
Identity = 402/796 (50.50%), Postives = 486/796 (61.06%), Query Frame = 0

Query:   27 GVVSLGYHGWQAKHLLLSFHRIFLDRRGNGRL----DLVEESTKLRGVIFWCLSSINA--EALDPEESEAFSKDENIFNDGLTDFYHVWTLAESLLLDPSPLPAARLLQWLQSYMQSGDEDF---ELEEAKRMACEADEHGGFAELTPMYWDAVRALVVRAMPERAEQMLRRYPHRGDNASEVGALASQLKKMPALPLTNGAQDRGDGS------TPAQIDRQRFSESWIRWQKHCKEVAASFGVVPGVGGERVGDGGDGDERRQLRWLWGVLCGVRSCLEEATGSWVQLFAAVLAFERPDVRPEGVGPLLRDCKRKYSPVPDEKFLIQVIQDASTGIVSSIKKFARERGDTAALSSCAAHLIDLLFRAQLSSVTSVSRSWYFQRLAERLRVFPGGGWELAATYL--------GEVDGDDARLLMDLAHAVVPASERAAHELVEWCHVKGLGSKAAAAVCRARGVAWLHKTGFPAVAWGAANEQGHGDGDGNAKDASVTGACGKAAYWLAKGGGGILLERLCAEVSERLMVEVLPSPG--ADVE-AQKAVVAEAEGVLAAVPHDIRSTESFFLEGYMEIAHHLLAESESQ---------AINFDDIAGANVRLAGFCAVKMLAPRPSPVTFGISTLPVPPRTWAHLLRLALPALEAPPRQEANTENRAQS--IYLSQVHVLLARMQTLVTSEHRVGTERG---------GRTTSALPAAPAPYGFPGGEG----EVQRIRTALASCLARAIMAKNRQGAAP-VFGSFGRRAVRSN-----SERLPPEALITPRAAV 766
            G   LGY GW A+HL+L+FHRIF ++    +     DLV ES + RGVIFWCL+ IN+  +      +EA  +DE++F+DGLTDFYHVWTLAE+ LLD  PLPAA LL+WL+ Y  SG+++    EL+E +R+A EAD  GG A+  P YWDA+R+LVV   P RA ++LR +P   DNASEVGALA QL+ MP L L  G                A +DR+ F E+W RWQK CK  A  FGVV GVG +R G G  G ERRQLRWLWGVLCG R CL EAT +W   FAAVLA+ERPD R E V  ++R+C R YS   +E FL +VI+DAS G V SI KFAR+ GDT ALS CA HL+D+L RA+ ++VT   RSW+F+RLA+RLR  P G WELAATYL        G+ + D+A LL +LA  VVP SERA HELVEWC  +GLG +  AAVCRARG AW+ KTG  AVA G A      +G+ ++  A V GACGKAAYWLAKGGG + LERLCAEVSERLMVEV    G  ADV+ AQ+ V+AEA+GVLAAVP  +   E  FL  Y EIA  L AE+  Q           +     G   RLAG  AV MLAPR S    G                      +AP       E    S  + ++QVH LLA++Q LV SEHRVG+ RG         G     L  APAPYGF  G G    +V  IR ALA CL  A+MA+N   AAP   GS  RR  R +     + RLP EAL+ PR AV
Sbjct:   35 GAAELGYQGWAARHLVLAFHRIFAEQSERAQWGDTGDLVSESLEHRGVIFWCLTHINSNSDVASAAPTEADRRDEDVFHDGLTDFYHVWTLAEAFLLDSIPLPAAPLLRWLKMYSLSGEDEAARSELDETERVALEADAAGGSADPNPAYWDALRSLVVGVAPRRAAELLRSHPEGRDNASEVGALARQLENMPLL-LREGXXXXXXXXXXXXXXAEAHLDREGFFETWTRWQKGCKAAAGRFGVVVGVGDDR-GGGDVGPERRQLRWLWGVLCGERGCLVEATNTWSGFFAAVLAYERPDTRKEEVASVMRECTRVYSEHQEEAFLTKVIRDASAGAVDSILKFARDHGDTLALSVCATHLVDVLSRAKFTAVTHQQRSWFFRRLADRLRASPCGFWELAATYLSGGSSRDGGDDEDDEAGLLRELALGVVPESERATHELVEWCRARGLGEEVEAAVCRARGAAWIAKTGLSAVAMGTAVAAA--EGETSSDGARVPGACGKAAYWLAKGGGWVQLERLCAEVSERLMVEVYSGVGSAADVQQAQQVVLAEADGVLAAVPPGVNGPELSFLGRYKEIADLLSAEAAGQPPPPHASGIGSSSPAAVGPGARLAGALAVDMLAPRGS--CDG----------------------DAPVAGAGADEGEEASAGVTVAQVHALLAKLQALVASEHRVGSVRGVWNRSRGGPGCGGGTLATAPAPYGFCSGGGSGVEQVSEIRRALAGCLGAAMMAQNAAEAAPEAVGSGRRRGGRGDFTLLGTRRLPAEALVDPRVAV 802

The following BLAST results are available for this feature:

BLAST of mRNA_F-distichus_contig10627.535.1 vs. uniprot

BLAST of mRNA_F-distichus_contig10627.535.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
D8LCE2_ECTSI	1.130e-220	50.50	Nuclear pore complex protein Nup85 n=2 Tax=Ectocar...	[more]

InterPro

Analysis Name: OGS1.0 of Fucus distichus monoicous
Date Performed: 2021-02-24


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011502	Nucleoporin Nup85-like	PFAM	PF07575	Nucleopor_Nup85	coord: 58..471 e-value: 5.0E-20 score: 71.6
IPR011502	Nucleoporin Nup85-like	PANTHER	PTHR13373	FROUNT PROTEIN-RELATED	coord: 60..472 coord: 503..730

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011502	Nucleoporin Nup85-like	PFAM	PF07575	Nucleopor_Nup85	coord: 58..471 e-value: 5.0E-20 score: 71.6
IPR011502	Nucleoporin Nup85-like	PANTHER	PTHR13373	FROUNT PROTEIN-RELATED	coord: 60..472 coord: 503..730

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
F-distichus_contig10627	contig	F-distichus_contig10627:992..9009 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Fucus distichus monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_F-distichus_contig10627.535.1	mRNA_F-distichus_contig10627.535.1	Fucus distichus monoicous	mRNA	F-distichus_contig10627 962..9613 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_F-distichus_contig10627.535.1 ID=prot_F-distichus_contig10627.535.1|Name=mRNA_F-distichus_contig10627.535.1|organism=Fucus distichus monoicous|type=polypeptide|length=772bp
MQQQSVGAAMDVSFDDDRHSLPPSDEGVVSLGYHGWQAKHLLLSFHRIFL
DRRGNGRLDLVEESTKLRGVIFWCLSSINAEALDPEESEAFSKDENIFND
GLTDFYHVWTLAESLLLDPSPLPAARLLQWLQSYMQSGDEDFELEEAKRM
ACEADEHGGFAELTPMYWDAVRALVVRAMPERAEQMLRRYPHRGDNASEV
GALASQLKKMPALPLTNGAQDRGDGSTPAQIDRQRFSESWIRWQKHCKEV
AASFGVVPGVGGERVGDGGDGDERRQLRWLWGVLCGVRSCLEEATGSWVQ
LFAAVLAFERPDVRPEGVGPLLRDCKRKYSPVPDEKFLIQVIQDASTGIV
SSIKKFARERGDTAALSSCAAHLIDLLFRAQLSSVTSVSRSWYFQRLAER
LRVFPGGGWELAATYLGEVDGDDARLLMDLAHAVVPASERAAHELVEWCH
VKGLGSKAAAAVCRARGVAWLHKTGFPAVAWGAANEQGHGDGDGNAKDAS
VTGACGKAAYWLAKGGGGILLERLCAEVSERLMVEVLPSPGADVEAQKAV
VAEAEGVLAAVPHDIRSTESFFLEGYMEIAHHLLAESESQAINFDDIAGA
NVRLAGFCAVKMLAPRPSPVTFGISTLPVPPRTWAHLLRLALPALEAPPR
QEANTENRAQSIYLSQVHVLLARMQTLVTSEHRVGTERGGRTTSALPAAP
APYGFPGGEGEVQRIRTALASCLARAIMAKNRQGAAPVFGSFGRRAVRSN
SERLPPEALITPRAAVGMPAR*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR011502	Nucleoporin_Nup85