prot_F-distichus_contig10333.293.1 (polypeptide) Fucus distichus monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-distichus_contig10333.293.1
Unique Nameprot_F-distichus_contig10333.293.1
Typepolypeptide
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Sequence length109
Homology
BLAST of mRNA_F-distichus_contig10333.293.1 vs. uniprot
Match: D7G5N9_ECTSI (DNA-directed RNA polymerase subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5N9_ECTSI)

HSP 1 Score: 231 bits (588), Expect = 5.530e-77
Identity = 101/108 (93.52%), Postives = 104/108 (96.30%), Query Frame = 0
Query:    1 MLFCPTDGNLLMVESGPQGWTRFCCQTCPYVHPMEPSDKITRKIVLKKKAVDDIMGGEDAWANVDKTSTTCPFCNNKEAFFLQVQLRSADEPMTCFYKCTRCKQRWKE 108
            MLFCPTDG+LLMVESGPQGWTRFCCQTCPY+HPMEPSDKITRKI LKKKAVDDIMGG+DAWANVDKT TTCPFCNNKEAFFL VQLRSADEPMTCFYKCT CKQRWKE
Sbjct:    1 MLFCPTDGSLLMVESGPQGWTRFCCQTCPYIHPMEPSDKITRKIALKKKAVDDIMGGDDAWANVDKTQTTCPFCNNKEAFFLMVQLRSADEPMTCFYKCTNCKQRWKE 108          
BLAST of mRNA_F-distichus_contig10333.293.1 vs. uniprot
Match: A0A836CB68_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB68_9STRA)

HSP 1 Score: 147 bits (370), Expect = 1.100e-43
Identity = 66/112 (58.93%), Postives = 78/112 (69.64%), Query Frame = 0
Query:    1 MLFCPTDGNLLMVESGPQGWTRFCCQTCPYVHPMEPSDKITRKIVLKKKAVDDIMGGEDAWANVDKTSTTCPFCNN----KEAFFLQVQLRSADEPMTCFYKCTRCKQRWKE 108
            MLFCPT GNLLMVE+  +G  RF CQTCPYVHP+    K+T+ + L++K VDD++GG DAW NVDK    C  C +    KEA+F Q QLRSADEPMT FYKC  C  RW E
Sbjct:    1 MLFCPTCGNLLMVEAATRGGQRFACQTCPYVHPLGQGGKVTKALTLQRKEVDDVLGGADAWVNVDKAPVACADCKDPGKGKEAYFFQAQLRSADEPMTVFYKCVDCGFRWNE 112          
BLAST of mRNA_F-distichus_contig10333.293.1 vs. uniprot
Match: A0A024UTD8_9STRA (DNA-directed RNA polymerase subunit n=8 Tax=Saprolegniaceae TaxID=4764 RepID=A0A024UTD8_9STRA)

HSP 1 Score: 144 bits (362), Expect = 1.510e-42
Identity = 61/108 (56.48%), Postives = 83/108 (76.85%), Query Frame = 0
Query:    1 MLFCPTDGNLLMVESGPQGWTRFCCQTCPYVHPMEPSDKITRKIVLKKKAVDDIMGGEDAWANVDKTSTTCPFCNNKEAFFLQVQLRSADEPMTCFYKCTRCKQRWKE 108
            M FCPT GNLLMVE    G  RFCCQTCPY++ +  + K+  K+ L++K VDD++GG++AW NVD+T T CPFC + +A+F+Q+Q+RSADEP T FYKCT CK++W +
Sbjct:    1 MHFCPTCGNLLMVEPDSDGM-RFCCQTCPYIYKI--NQKVETKVPLQRKKVDDVLGGDEAWENVDQTDTRCPFCEHTKAYFMQIQIRSADEPSTTFYKCTGCKKQWND 105          
BLAST of mRNA_F-distichus_contig10333.293.1 vs. uniprot
Match: W7TK62_9STRA (DNA-directed RNA polymerase subunit n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TK62_9STRA)

HSP 1 Score: 142 bits (358), Expect = 6.150e-42
Identity = 63/106 (59.43%), Postives = 82/106 (77.36%), Query Frame = 0
Query:    1 MLFCPTDGNLLMVESGPQGWTRFCCQTCPYVHPMEPSDKITRKIVLKKKAVDDIMGGEDAWANVDKTSTTCPFCNNKEAFFLQVQLRSADEPMTCFYKCTRCKQRW 106
            M FCP   NLL+VE G Q + RFCCQTCPY+  +  + KI++ + LK+K VDD++GGEDAWA  D+T+T CPFC++ EAFF+Q+Q+RSADEPMT FY+CT C  RW
Sbjct:    1 MKFCPICSNLLLVELGEQNF-RFCCQTCPYISVI--TKKISKTMKLKRKEVDDVLGGEDAWAAADRTTTACPFCDSMEAFFVQMQIRSADEPMTTFYRCTLCANRW 103          
BLAST of mRNA_F-distichus_contig10333.293.1 vs. uniprot
Match: A0A058ZBP1_FONAL (DNA-directed RNA polymerase subunit n=1 Tax=Fonticula alba TaxID=691883 RepID=A0A058ZBP1_FONAL)

HSP 1 Score: 137 bits (344), Expect = 9.140e-40
Identity = 60/110 (54.55%), Postives = 82/110 (74.55%), Query Frame = 0
Query:    1 MLFCPTDGNLLMVESGPQ--GWTRFCCQTCPYVHPMEPSDKITRKIVLKKKAVDDIMGGEDAWANVDKTSTTCPFCNNKEAFFLQVQLRSADEPMTCFYKCTRCKQRWKE 108
            MLFCP  GN+L+V S     G  +F CQTCPYVH ++   KI+ +I+LK+K VDD++GGE +W NVD T   CP C+N+ A+F+Q+Q+RSADEPM+ FYKCT+C  +W+E
Sbjct:    1 MLFCPGCGNVLLVNSDASDIGDFQFACQTCPYVHSIKR--KISSRIILKRKEVDDVLGGEGSWDNVDSTEVPCPKCDNRRAYFMQIQIRSADEPMSTFYKCTKCAAQWRE 108          
BLAST of mRNA_F-distichus_contig10333.293.1 vs. uniprot
Match: A0A7S0RJ62_9CHLO (DNA-directed RNA polymerase subunit n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0RJ62_9CHLO)

HSP 1 Score: 134 bits (338), Expect = 7.050e-39
Identity = 60/108 (55.56%), Postives = 80/108 (74.07%), Query Frame = 0
Query:    1 MLFCPTDGNLLMVESGPQGWTRFCCQTCPYVHPMEPSDKITRKIVLKKKAVDDIMGGEDAWANVDKTSTTCPFCNNKEAFFLQVQLRSADEPMTCFYKCTRCKQRWKE 108
            M FCPT G LLMVE       R+ CQTCPYV+ ++   KI ++ VL+ K VDD++GG++AWANVD+T  +CP C++ +A+F+QVQ RSADEPMT FYKC +C  RWK+
Sbjct:    2 MTFCPTCGTLLMVEYCELTRLRYACQTCPYVYMIDR--KIVKEHVLETKEVDDVLGGDEAWANVDRTEVSCPKCDHGQAYFMQVQTRSADEPMTIFYKCCKCANRWKD 107          
BLAST of mRNA_F-distichus_contig10333.293.1 vs. uniprot
Match: A0A1Y1IMC9_KLENI (DNA-directed RNA polymerase subunit n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IMC9_KLENI)

HSP 1 Score: 133 bits (335), Expect = 2.140e-38
Identity = 60/110 (54.55%), Postives = 79/110 (71.82%), Query Frame = 0
Query:    1 MLFCPTDGNLLMVESGPQGWTRFCCQTCPYVHPMEPSDKITRKIVLKKKAVDDIMGGEDAWANVDKTSTTCPFCNNKEAFFLQVQLRSADEPMTCFYKCTR--CKQRWKE 108
            M FCPT  NLL+VE G  G  R+ CQTCPYV+ ++   K+  K+ L +K VDD++GGE+AW NVDKT  TCP C   EA+F+Q+Q+RSADEPM+ FYKC +  C  +W+E
Sbjct:    1 MDFCPTCANLLLVEGGNMGELRYFCQTCPYVYTIKA--KMKNKLPLARKEVDDVLGGEEAWRNVDKTEATCPKCRYGEAYFMQIQIRSADEPMSTFYKCCKPECSHQWRE 108          
BLAST of mRNA_F-distichus_contig10333.293.1 vs. uniprot
Match: A9SIZ2_PHYPA (DNA-directed RNA polymerase subunit n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9SIZ2_PHYPA)

HSP 1 Score: 133 bits (335), Expect = 2.210e-38
Identity = 63/111 (56.76%), Postives = 82/111 (73.87%), Query Frame = 0
Query:    1 MLFCPTDGNLLMVESGPQGWT-RFCCQTCPYVHPMEPSDKITRKIVLKKKAVDDIMGGEDAWANVDKTSTTCPFCNNKEAFFLQVQLRSADEPMTCFYKCTR--CKQRWKE 108
            M FCPT  NLL+VE+   G   R+ C TCPYV+ ++   KI++K+ LKKK VDD++GGEDAW NVD+T+ TCP C+  +A+F+Q+Q+RSADEPMT FYKC    C  RWKE
Sbjct:    1 MDFCPTCANLLLVENPSMGRPLRYFCPTCPYVYVVDR--KISKKLKLKKKEVDDVLGGEDAWKNVDRTTVTCPNCSYGQAYFMQIQIRSADEPMTTFYKCCNIDCNHRWKE 109          
BLAST of mRNA_F-distichus_contig10333.293.1 vs. uniprot
Match: A0A077ZVQ1_STYLE (DNA-directed RNA polymerase subunit n=2 Tax=Oxytrichidae TaxID=57506 RepID=A0A077ZVQ1_STYLE)

HSP 1 Score: 133 bits (334), Expect = 2.780e-38
Identity = 58/108 (53.70%), Postives = 80/108 (74.07%), Query Frame = 0
Query:    1 MLFCPTDGNLLMVESGPQGWTRFCCQTCPYVHPMEPSDKITRKIVLKKKAVDDIMGGEDAWANVDKTSTTCPFCNNKEAFFLQVQLRSADEPMTCFYKCTRCKQRWKE 108
            MLFCPT  NLL++E     + RF C+TCPYV  +E +    +K+ L++K VDD++GG++AW NVD+    CP CNNK A+F+Q+Q+RSADEPMT FYKCT+C  +W+E
Sbjct:    1 MLFCPTCANLLLIEKTHSDF-RFFCKTCPYVFVVEQN--FEKKMQLERKEVDDVLGGKEAWENVDQIEAQCPKCNNKRAYFMQIQIRSADEPMTTFYKCTQCSYQWRE 105          
BLAST of mRNA_F-distichus_contig10333.293.1 vs. uniprot
Match: A0A7S0PIB0_CAFRO (DNA-directed RNA polymerase subunit n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A7S0PIB0_CAFRO)

HSP 1 Score: 132 bits (333), Expect = 5.850e-38
Identity = 57/108 (52.78%), Postives = 77/108 (71.30%), Query Frame = 0
Query:    1 MLFCPTDGNLLMVESGPQGWTRFCCQTCPYVHPMEPSDKITRKIVLKKKAVDDIMGGEDAWANVDKTSTTCPFCNNKEAFFLQVQLRSADEPMTCFYKCTRCKQRWKE 108
            MLFCPT GN+L++E G    T+F C TCPY+  +  + KIT+ I L++K VDD++GG  AW NVD+T   CP C ++ A+F+Q+Q+RSADEPMT FYKC  C  RW +
Sbjct:   16 MLFCPTCGNMLLIEGG--AGTKFFCTTCPYIQRV--TTKITKSITLERKTVDDVLGGAAAWENVDQTDALCPACGHRRAYFMQLQIRSADEPMTTFYKCVACSGRWND 119          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig10333.293.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5N9_ECTSI5.530e-7793.52DNA-directed RNA polymerase subunit n=2 Tax=Ectoca... [more]
A0A836CB68_9STRA1.100e-4358.93DNA-directed RNA polymerase subunit n=1 Tax=Tribon... [more]
A0A024UTD8_9STRA1.510e-4256.48DNA-directed RNA polymerase subunit n=8 Tax=Saprol... [more]
W7TK62_9STRA6.150e-4259.43DNA-directed RNA polymerase subunit n=2 Tax=Nannoc... [more]
A0A058ZBP1_FONAL9.140e-4054.55DNA-directed RNA polymerase subunit n=1 Tax=Fontic... [more]
A0A7S0RJ62_9CHLO7.050e-3955.56DNA-directed RNA polymerase subunit n=1 Tax=Pyrami... [more]
A0A1Y1IMC9_KLENI2.140e-3854.55DNA-directed RNA polymerase subunit n=1 Tax=Klebso... [more]
A9SIZ2_PHYPA2.210e-3856.76DNA-directed RNA polymerase subunit n=1 Tax=Physco... [more]
A0A077ZVQ1_STYLE2.780e-3853.70DNA-directed RNA polymerase subunit n=2 Tax=Oxytri... [more]
A0A7S0PIB0_CAFRO5.850e-3852.78DNA-directed RNA polymerase subunit n=2 Tax=Cafete... [more]

Pages

back to top
InterPro
Analysis Name: OGS1.0 of Fucus distichus monoicous
Date Performed: 2021-02-24
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001222Zinc finger, TFIIS-typeSMARTSM00440Cys4_2coord: 69..108
e-value: 1.0E-17
score: 74.9
IPR001222Zinc finger, TFIIS-typePFAMPF01096TFIIS_Ccoord: 70..107
e-value: 1.1E-17
score: 63.6
IPR001222Zinc finger, TFIIS-typePROSITEPS00466ZF_TFIIS_1coord: 71..106
IPR001222Zinc finger, TFIIS-typePROSITEPS51133ZF_TFIIS_2coord: 67..107
score: 13.977
IPR001529DNA-directed RNA polymerase, M/15kDa subunitSMARTSM00661rpol9cneucoord: 2..54
e-value: 2.4E-5
score: 33.8
IPR001529DNA-directed RNA polymerase, M/15kDa subunitPFAMPF02150RNA_POL_M_15KDcoord: 1..35
e-value: 7.3E-8
score: 32.2
IPR012164DNA-directed RNA polymerase subunit/transcription factor SPIRSFPIRSF005586RNApol_RpoMcoord: 1..108
e-value: 6.6E-29
score: 98.7
NoneNo IPR availableGENE3D2.20.25.10coord: 57..108
e-value: 2.8E-20
score: 73.3
NoneNo IPR availablePANTHERPTHR11239DNA-DIRECTED RNA POLYMERASEcoord: 1..107
NoneNo IPR availablePANTHERPTHR11239:SF12DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC10coord: 1..107
NoneNo IPR availableSUPERFAMILY57783Zinc beta-ribboncoord: 48..108

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001222Zinc finger, TFIIS-typeSMARTSM00440Cys4_2coord: 69..108
e-value: 1.0E-17
score: 74.9
IPR001222Zinc finger, TFIIS-typePFAMPF01096TFIIS_Ccoord: 70..107
e-value: 1.1E-17
score: 63.6
IPR001222Zinc finger, TFIIS-typePROSITEPS00466ZF_TFIIS_1coord: 71..106
IPR001222Zinc finger, TFIIS-typePROSITEPS51133ZF_TFIIS_2coord: 67..107
score: 13.977
IPR001529DNA-directed RNA polymerase, M/15kDa subunitSMARTSM00661rpol9cneucoord: 2..54
e-value: 2.4E-5
score: 33.8
IPR001529DNA-directed RNA polymerase, M/15kDa subunitPFAMPF02150RNA_POL_M_15KDcoord: 1..35
e-value: 7.3E-8
score: 32.2
IPR012164DNA-directed RNA polymerase subunit/transcription factor SPIRSFPIRSF005586RNApol_RpoMcoord: 1..108
e-value: 6.6E-29
score: 98.7
NoneNo IPR availableGENE3D2.20.25.10coord: 57..108
e-value: 2.8E-20
score: 73.3
NoneNo IPR availablePANTHERPTHR11239DNA-DIRECTED RNA POLYMERASEcoord: 1..107
NoneNo IPR availablePANTHERPTHR11239:SF12DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC10coord: 1..107
NoneNo IPR availableSUPERFAMILY57783Zinc beta-ribboncoord: 48..108

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig10333contigF-distichus_contig10333:1255..6508 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Fucus distichus monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig10333.293.1mRNA_F-distichus_contig10333.293.1Fucus distichus monoicousmRNAF-distichus_contig10333 1255..6508 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-distichus_contig10333.293.1 ID=prot_F-distichus_contig10333.293.1|Name=mRNA_F-distichus_contig10333.293.1|organism=Fucus distichus monoicous|type=polypeptide|length=109bp
MLFCPTDGNLLMVESGPQGWTRFCCQTCPYVHPMEPSDKITRKIVLKKKA
VDDIMGGEDAWANVDKTSTTCPFCNNKEAFFLQVQLRSADEPMTCFYKCT
RCKQRWKE*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001222Znf_TFIIS
IPR001529DNA-dir_RNA_pol_M/15kDasu
IPR012164Rpa12/Rpb9/Rpc10/TFS