prot_F-distichus_contig10058.53.1 (polypeptide) Fucus distichus monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-distichus_contig10058.53.1
Unique Nameprot_F-distichus_contig10058.53.1
Typepolypeptide
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Sequence length784
Homology
BLAST of mRNA_F-distichus_contig10058.53.1 vs. uniprot
Match: A0A6H5KHQ1_9PHAE (TRAF-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KHQ1_9PHAE)

HSP 1 Score: 558 bits (1437), Expect = 1.290e-179
Identity = 339/802 (42.27%), Postives = 440/802 (54.86%), Query Frame = 0
Query:    1 MRELPSSPVEALRLEL--LRQKKLGHPSTLSTAEGPCTE---RCRIGCGASAPKSVEFFPACLGHQVALDKPSIDGPKKKELEPQGGSGTQS------------SGPDTL-RANPVNVLRRDGWSPVGGHSAGAPRSQALSSLSSLLHNTDVDYTNCPSGCGEEVRLKDLMAHQTYLCSARYVDCLMPGCSSLVQARFLGAHMRKECAERRKQRLLADRGKILDMSVSCAECGEMLPKRHMLAHLTNDCSMRIVQCPNPGCPLMVRAGVLQEHKRIYCKTAVRNAKLCDRQTTRKPTE-KCPACHENVASRDFRSHVAEGCLMRVVDCPNKKLGCGERIKASEIGLHLRNACGVQIDRSERASRHESRQQLVQCSACGNMVVLQHLLHHHRTKCPDRRVPCKHWEVGCSAVLRLSKMENHLKVDRLLDPRSCLVFDGGRAYIALGQEDRRPPWTVEMWIWRPPLIESTREKARTALKAYWELKRAREKLGGTERHLRALEHALIDAAAQASTERSTEAGDLRERLTDEMVSAATQRDNAKVDLAISVVLLSNTLTSVTRGLEKINEENRSHNFERLALESTPWYHAVGSSLPPSITWEQRHGDHSRAQSDGQGADLNKFSYFTTVLAGSETVAEVTSPLLATA------AGKGALP-------------------------------------------PDASGGGSFELQKEILPEKVESCEAKTFVDIEDRVTSILKKREMLEKIEEEESQRGETAFWAEWFGLSGQSLAQRLLTLTEETMPIL-EEAAAVAGLTTEALF 733
            MR+LP SPVEA R EL    + +   PS L+     C E    C  G GA+     E  P        L+   +    +  +  + G    +            +GPD   R  P N LRR      GG S   P +    ++SSL H    D   CPSGCGEE+ + DL  H   LC+ RYV C MPGCS+LVQAR L  H+R++C +R++QR+LA  GK LD  ++C  C E  P++ M  HL  DC +R+VQCPN  C  M++A  L +H+R  CKTA +   L ++  +R PTE +C ACH  V +   R H ++ C  RVV CPNK LGCGE + A ++  HLR  C V I R +RA++H  R+Q VQCS CG  VV Q L  HHR KCP+RRVPCKHWE+GC A+LRLS M++HLKVDRLLDPR+CL FDGGRAYI LG+ DR+PPWT EMW+WRP L+E TREK RTALKA WE  +AR KL  TER L  LE  L+D A +A+ ERS EA   R++LTDEM++AAT RD+AKVDL +SVV+LSN++ S  RG+E++  ++R    +RLAL STPWY A  S  P    + +  G  S  QS G G          TV+   E + E   PL   A       G G  P                                           P A    S  L  + +             DI+  + +I K+++  E  EE + +  +  FWAEW  L+G SLA+R+L L  ET+P L EEA A+ G+  EALF
Sbjct:   49 MRDLPLSPVEAFRSELQSTTRNEASSPSALTAGTRHCVEYFRSCLTGEGATRQMEQEQGPRTDSDLGGLEAELLGAGDEPPVVARTGHSAVAPAKQATNNNALPNGPDGRGRHLPSNRLRRPS---TGGPSRRPPVAPLAEAVSSLQHRGTWDRIECPSGCGEELWVTDLRHHHASLCALRYVSCFMPGCSTLVQARQLRLHLRRDCFKRKEQRVLAKNGKALDDEIACKACNERFPRKQMRMHLATDCQIRMVQCPN--CMEMMQARSLADHQRFDCKTAKQKGALHEQAASR-PTEIECGACHGTVVTTQLRRHTSDECPSRVVACPNKYLGCGEELPALDVAYHLRKQCAVAITREDRAAKHLFRRQRVQCSGCGYWVVCQDLPRHHREKCPNRRVPCKHWELGCPAMLRLSAMDDHLKVDRLLDPRACLAFDGGRAYITLGESDRKPPWTAEMWVWRPGLVEGTREKTRTALKALWEFHQARGKLAITERRLALLEPLLVDVATRAAKERSEEAAKTRDKLTDEMIAAATVRDDAKVDLVVSVVVLSNSVASAARGVEELTAQDRLRGLDRLALGSTPWYSA--SPGPSRAGFCRDEGIRSVNQSLGAGK---------TVVESKEVIGEENRPLGTVAESPKSPTGLGTAPTLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTQDDGQPSAQVTNSIPLDPDGVVAGSGGASGNDKDDIDSMLLNISKEQQAFEASEEAKLRMNKAVFWAEWIALTGPSLARRVLGLQAETLPRLKEEAVAITGIANEALF 833          
BLAST of mRNA_F-distichus_contig10058.53.1 vs. uniprot
Match: A0A835YWB7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWB7_9STRA)

HSP 1 Score: 229 bits (584), Expect = 3.670e-59
Identity = 144/444 (32.43%), Postives = 203/444 (45.72%), Query Frame = 0
Query:  137 TNCPSGCGEEVRLKD--LMAHQTYLCSARYVDCLMPGCSSLVQARFLGAHMRKECAERRKQRLLADRGKILDMSVSCAECGEMLPKRHMLAHLTNDCSMRIVQCPNPGCPLMVRAGVLQEHKRIYCKTAVRNAKLCDRQTTRKPTEKCPACHENVASRDFRSHVAEGCLMRVVDCPNKKLGCGERIKASEIGLHLRNACG---------------------------VQIDRSERASRHESRQQLVQCSACGNMVVLQHLLHHHRTKCPDRRVPCKHWEVGCSAVLRLSKMENHLKVDRLLDPRSCLVFDGGRAYIALGQEDRRPPWTVEMWIWRPPLIESTREKARTALKAYWELKRAREKLGGTERHLRALEHALIDAAAQASTERSTEAGDLRERLTDEMVSAATQRDNAKVDLAISVVLLSNTLTSVTRGLEKINEENRS 551
            T CP GCG +V  +   L  H    C++R V C   GC +LVQAR L  H   ECA   ++R LA R +    + +  E            H    C +R+++C   GC   V AG + EH    C   + + ++      R    +C  CH  VA    R HV + C  R+V CP+ + GCG  + A ++  HL + C                            V+ +R ERA R   R Q+ QC ACG  +  Q L  H   +CP+R VPCKHWE+GC A +RL  M  HL VD     R CL+  GG+AY+ LG+ D  PPWT E W++R PL++  RE+ R  L+  W  +            +R  E A    AA   T R+      R  +TD ++ AA QRD+  + +A++         +V RGL  +     S
Sbjct:  171 TQCPQGCGCDVPARGPALRRHLGAECASRVVTCPELGCGALVQARSLPLHAAAECAAAARRRALAQRAEAAASTRADRE-----------RHAREACPLRLLRCGAAGCGAAVTAGAMAEHVATVCAATLASRRVLAAAAARPKHVRCSGCHAAVAVDALRWHVEQDCPQRLVVCPHAESGCGAEVAACDLPAHLLHDCSGDDDVLYXXXXXXXXXXXXXXXXXXXRVKRERDERADRSLERMQMTQCRACGRRLQAQRLRAHALLRCPNRVVPCKHWELGCRARVRLGDMCAHLAVDAARR-RPCLLLGGGQAYVHLGERDVPPPWTAEFWVYRLPLVDEVREQMRETLQEVWRYQEG----------VRMQEAATAQIAALEETLRAATDLSARAEVTDALIRAAGQRDDGLLIMAVACSRADALSKAVMRGLATLRSSKPS 592          
BLAST of mRNA_F-distichus_contig10058.53.1 vs. uniprot
Match: A0A482SVR3_9ARCH (TRAF-type domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SVR3_9ARCH)

HSP 1 Score: 124 bits (312), Expect = 1.850e-27
Identity = 83/316 (26.27%), Postives = 134/316 (42.41%), Query Frame = 0
Query:  129 LHNTDVDYTNCPSGCGEEVRLKDLMAHQTYLCSARYVDCLMPGCSSLVQARFLGAHMRKECAERRKQRLLADRGKILDMSVSCAECGEMLPKRHMLAHLTNDCSMRIVQCPNPGCPLMVRAGVLQEHKRIYCKTAVRNAKLCDRQTTRKPTEKCPACHENVASRDFRSHVAEGCLMRVVDCPNKKLGCGER-IKASEIGLHLRNACGVQIDRSERASRHESRQQLVQCSACGNMVVLQHLLHHHRTKCPDRRVPCKHWEVGCSAVLRLSKMENHLKVDRLLDPRSCLVFDGGRAYIALGQEDRRPPWTVEMWIWRP 443
            +  T +    CP  CGEEV  K L  H+   C+ R   C  P C   +  + +  H++ EC   R ++ + ++ +   M    AE          + H  N    +++  P    P+                TA+ +  +  R  +      CP C E +       H+ + C  R V CPN   GC E+ I  + +  H+   C  +  R +   +   R + +QCS CG+MV+L+    H    C +R VPCK+  +GC  ++   +   H  ++     R CL   G   Y+ + + D   PWTVEMWI+RP
Sbjct:   45 IATTGIQAVLCPY-CGEEVDSKQLERHKASTCTNRLTTCPNPECKLTIHLKQMKFHLKNECITVRSRKKILEQAQQRAMEEQRAE-------EERMKHFAN--MQKLLSRPPTVQPV----------------TAI-SQPVSARPVSAIKMVMCPDCTETMRESTLPHHLIDECRCRRVMCPNYGFGCKEQEIPLASLQKHISEHCRAEKHRQQMYMKSRHRFEKLQCSTCGDMVMLKDWRKHEHEDCENRLVPCKNHNIGCQVMVPNRERGLHEHLEEAY-ARHCLYMSGHGTYLNINENDIVFPWTVEMWIYRP 332          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig10058.53.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KHQ1_9PHAE1.290e-17942.27TRAF-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A835YWB7_9STRA3.670e-5932.43Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A482SVR3_9ARCH1.850e-2726.27TRAF-type domain-containing protein n=1 Tax=archae... [more]
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InterPro
Analysis Name: OGS1.0 of Fucus distichus monoicous
Date Performed: 2021-02-24
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 463..483
NoneNo IPR availablePANTHERPTHR10131TNF RECEPTOR ASSOCIATED FACTORcoord: 338..403
coord: 131..255
NoneNo IPR availablePANTHERPTHR10131:SF101TNF RECEPTOR-ASSOCIATED FACTOR FAMILY PROTEIN DDB_G0268444-RELATEDcoord: 259..331
NoneNo IPR availablePANTHERPTHR10131:SF101TNF RECEPTOR-ASSOCIATED FACTOR FAMILY PROTEIN DDB_G0268444-RELATEDcoord: 338..403
coord: 131..255
NoneNo IPR availablePANTHERPTHR10131TNF RECEPTOR ASSOCIATED FACTORcoord: 259..331
IPR001293Zinc finger, TRAF-typePFAMPF02176zf-TRAFcoord: 208..255
e-value: 9.8E-5
score: 23.0
coord: 351..401
e-value: 4.8E-5
score: 24.0
coord: 282..326
e-value: 8.9E-5
score: 23.1
IPR001293Zinc finger, TRAF-typePROSITEPS50145ZF_TRAFcoord: 296..389
score: 8.658
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 208..269
e-value: 4.4E-7
score: 31.8
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 271..337
e-value: 1.2E-5
score: 26.9
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 133..194
e-value: 6.7E-5
score: 25.1
IPR008974TRAF-likeSUPERFAMILY49599TRAF domain-likecoord: 138..194
IPR008974TRAF-likeSUPERFAMILY49599TRAF domain-likecoord: 210..265

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 463..483
NoneNo IPR availablePANTHERPTHR10131TNF RECEPTOR ASSOCIATED FACTORcoord: 338..403
coord: 131..255
NoneNo IPR availablePANTHERPTHR10131:SF101TNF RECEPTOR-ASSOCIATED FACTOR FAMILY PROTEIN DDB_G0268444-RELATEDcoord: 259..331
NoneNo IPR availablePANTHERPTHR10131:SF101TNF RECEPTOR-ASSOCIATED FACTOR FAMILY PROTEIN DDB_G0268444-RELATEDcoord: 338..403
coord: 131..255
NoneNo IPR availablePANTHERPTHR10131TNF RECEPTOR ASSOCIATED FACTORcoord: 259..331
IPR001293Zinc finger, TRAF-typePFAMPF02176zf-TRAFcoord: 208..255
e-value: 9.8E-5
score: 23.0
coord: 351..401
e-value: 4.8E-5
score: 24.0
coord: 282..326
e-value: 8.9E-5
score: 23.1
IPR001293Zinc finger, TRAF-typePROSITEPS50145ZF_TRAFcoord: 296..389
score: 8.658
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 208..269
e-value: 4.4E-7
score: 31.8
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 271..337
e-value: 1.2E-5
score: 26.9
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 133..194
e-value: 6.7E-5
score: 25.1
IPR008974TRAF-likeSUPERFAMILY49599TRAF domain-likecoord: 138..194
IPR008974TRAF-likeSUPERFAMILY49599TRAF domain-likecoord: 210..265

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig10058contigF-distichus_contig10058:1231..3990 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Fucus distichus monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig10058.53.1mRNA_F-distichus_contig10058.53.1Fucus distichus monoicousmRNAF-distichus_contig10058 1198..5878 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-distichus_contig10058.53.1 ID=prot_F-distichus_contig10058.53.1|Name=mRNA_F-distichus_contig10058.53.1|organism=Fucus distichus monoicous|type=polypeptide|length=784bp
MRELPSSPVEALRLELLRQKKLGHPSTLSTAEGPCTERCRIGCGASAPKS
VEFFPACLGHQVALDKPSIDGPKKKELEPQGGSGTQSSGPDTLRANPVNV
LRRDGWSPVGGHSAGAPRSQALSSLSSLLHNTDVDYTNCPSGCGEEVRLK
DLMAHQTYLCSARYVDCLMPGCSSLVQARFLGAHMRKECAERRKQRLLAD
RGKILDMSVSCAECGEMLPKRHMLAHLTNDCSMRIVQCPNPGCPLMVRAG
VLQEHKRIYCKTAVRNAKLCDRQTTRKPTEKCPACHENVASRDFRSHVAE
GCLMRVVDCPNKKLGCGERIKASEIGLHLRNACGVQIDRSERASRHESRQ
QLVQCSACGNMVVLQHLLHHHRTKCPDRRVPCKHWEVGCSAVLRLSKMEN
HLKVDRLLDPRSCLVFDGGRAYIALGQEDRRPPWTVEMWIWRPPLIESTR
EKARTALKAYWELKRAREKLGGTERHLRALEHALIDAAAQASTERSTEAG
DLRERLTDEMVSAATQRDNAKVDLAISVVLLSNTLTSVTRGLEKINEENR
SHNFERLALESTPWYHAVGSSLPPSITWEQRHGDHSRAQSDGQGADLNKF
SYFTTVLAGSETVAEVTSPLLATAAGKGALPPDASGGGSFELQKEILPEK
VESCEAKTFVDIEDRVTSILKKREMLEKIEEEESQRGETAFWAEWFGLSG
QSLAQRLLTLTEETMPILEEAAAVAGLTTEALFRVPVEEKGEKEAPPRTT
GGKGGGDDASASSGKYSRKKRKAEKKAKRKQRH*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001293Znf_TRAF
IPR013083Znf_RING/FYVE/PHD
IPR008974TRAF-like