mRNA_F-distichus_contig99999.19428.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig99999.19428.1
Unique NamemRNA_F-distichus_contig99999.19428.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
BLAST of mRNA_F-distichus_contig99999.19428.1 vs. uniprot
Match: D7FKM0_ECTSI (HECT-type E3 ubiquitin transferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKM0_ECTSI)

HSP 1 Score: 157 bits (397), Expect = 9.960e-43
Identity = 74/88 (84.09%), Postives = 83/88 (94.32%), Query Frame = 1
Query:    1 WDAIISFTPEEQGRFLKFVTSCSRPPLLGFERLNPPICVQKVPSGRNGRLPSSSTCMNLLKLPEYEDGQTLRDKLLYAISSNAGFELT 264
            W+AI SF+PEEQG+FLKFVTSCSRPPLLGFERLNPPIC+Q+VP G  GRLPSS+TCMNLLKLP+YED QTLR+KLLYAIS+NAGFELT
Sbjct: 1308 WEAIESFSPEEQGQFLKFVTSCSRPPLLGFERLNPPICLQRVPEGDEGRLPSSATCMNLLKLPQYEDRQTLREKLLYAISANAGFELT 1395          
BLAST of mRNA_F-distichus_contig99999.19428.1 vs. uniprot
Match: A0A7R9Y9Y8_9STRA (HECT-type E3 ubiquitin transferase n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9Y9Y8_9STRA)

HSP 1 Score: 127 bits (320), Expect = 1.570e-33
Identity = 59/88 (67.05%), Postives = 70/88 (79.55%), Query Frame = 1
Query:    1 WDAIISFTPEEQGRFLKFVTSCSRPPLLGFERLNPPICVQKVPSGRNGRLPSSSTCMNLLKLPEYEDGQTLRDKLLYAISSNAGFELT 264
            W  +  FTP E   FL+F+TSCSR PLLGF  LNP IC+QKVP    G+LPS++TCMNLLKLP+Y+D +TLR KLLYAISSNAGF+LT
Sbjct:  298 WQCVDEFTPREHADFLRFITSCSRQPLLGFSSLNPKICIQKVPHEPYGKLPSAATCMNLLKLPQYDDKETLRSKLLYAISSNAGFDLT 385          
BLAST of mRNA_F-distichus_contig99999.19428.1 vs. uniprot
Match: A0A835YYA3_9STRA (HECT-type E3 ubiquitin transferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYA3_9STRA)

HSP 1 Score: 127 bits (320), Expect = 3.890e-33
Identity = 61/89 (68.54%), Postives = 74/89 (83.15%), Query Frame = 1
Query:    1 WDAIISFTPEEQGRFLKFVTSCSRPPLLGFERLNPPICVQKVPSGRNG-RLPSSSTCMNLLKLPEYEDGQTLRDKLLYAISSNAGFELT 264
            WD I +FTP +Q  FLKFVTSCSR PLLGF+ L+PP+C+Q+V SG  G +LPSS+TCMNLLKLP Y+  +TLR+KLLYAIS+ AGFELT
Sbjct:  358 WDIIANFTPAQQALFLKFVTSCSRQPLLGFKHLSPPMCIQQVESGERGNKLPSSATCMNLLKLPRYDSRETLREKLLYAISAGAGFELT 446          
BLAST of mRNA_F-distichus_contig99999.19428.1 vs. uniprot
Match: A0A7S2G4K7_9STRA (HECT-type E3 ubiquitin transferase n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G4K7_9STRA)

HSP 1 Score: 118 bits (295), Expect = 9.390e-32
Identity = 57/90 (63.33%), Postives = 70/90 (77.78%), Query Frame = 1
Query:    1 WDAIISFTPEEQGRFLKFVTSCSRPPLLGFERLNPPICVQKVPSGRNG--RLPSSSTCMNLLKLPEYEDGQTLRDKLLYAISSNAGFELT 264
            W  +   TP++QG FLKFVTS  R PLLGFE + PPIC+QKVP G +G  RLPS++TCMNLLKLP+Y     LR+KLLYAIS+NAGFE++
Sbjct:   92 WQVLRELTPQQQGDFLKFVTSSPRQPLLGFEYMQPPICIQKVPLGEDGPSRLPSAATCMNLLKLPDYPTCDILREKLLYAISANAGFEMS 181          
BLAST of mRNA_F-distichus_contig99999.19428.1 vs. uniprot
Match: W7TQY7_9STRA (HECT-type E3 ubiquitin transferase n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TQY7_9STRA)

HSP 1 Score: 121 bits (304), Expect = 3.510e-30
Identity = 58/90 (64.44%), Postives = 72/90 (80.00%), Query Frame = 1
Query:    1 WDAIISFTPEEQGRFLKFVTSCSRPPLLGFERLNPPICVQKVPSGRNG--RLPSSSTCMNLLKLPEYEDGQTLRDKLLYAISSNAGFELT 264
            W+A+ S+TP+EQ  FL FVTSCSR PLLGF+ LNPP+C+Q+VP    G  RLPSS+TCMNLLKLP Y   + LR+KLLYAI++ AGFEL+
Sbjct: 1198 WEALRSYTPDEQAAFLMFVTSCSRQPLLGFQHLNPPVCIQRVPLTTEGGERLPSSATCMNLLKLPAYPTPEMLREKLLYAITAGAGFELS 1287          
BLAST of mRNA_F-distichus_contig99999.19428.1 vs. uniprot
Match: A0A8J8WDZ8_CHIOP (HECT-type E3 ubiquitin transferase n=1 Tax=Chionoecetes opilio TaxID=41210 RepID=A0A8J8WDZ8_CHIOP)

HSP 1 Score: 114 bits (286), Expect = 5.090e-30
Identity = 55/88 (62.50%), Postives = 68/88 (77.27%), Query Frame = 1
Query:    1 WDAIISFTPEEQGRFLKFVTSCSRPPLLGFERLNPPICVQKVPSGRNGRLPSSSTCMNLLKLPEYEDGQTLRDKLLYAISSNAGFELT 264
            W  +  F+  ++ + LKFVTSCSRPPLLGF+ L P  C+Q  PSG   RLP++STCMNLLKLPEY+D  TLRDKLLYAI+S +GFEL+
Sbjct:  129 WQVLREFSETQKRQLLKFVTSCSRPPLLGFKELQPAFCIQ--PSGSEDRLPTASTCMNLLKLPEYKDEHTLRDKLLYAITSGSGFELS 214          
BLAST of mRNA_F-distichus_contig99999.19428.1 vs. uniprot
Match: A0A183IZS6_9BILA (HECT-type E3 ubiquitin transferase n=1 Tax=Soboliphyme baturini TaxID=241478 RepID=A0A183IZS6_9BILA)

HSP 1 Score: 111 bits (277), Expect = 1.240e-29
Identity = 54/88 (61.36%), Postives = 69/88 (78.41%), Query Frame = 1
Query:    1 WDAIISFTPEEQGRFLKFVTSCSRPPLLGFERLNPPICVQKVPSGRNGRLPSSSTCMNLLKLPEYEDGQTLRDKLLYAISSNAGFELT 264
            W  + SFT E++ + LKFVTSCSRPPLLGF+ L P  C+Q +P+  N RLP+S+TCMNLLKLP + D QTLR+KLLYAI  ++GFEL+
Sbjct:   45 WSVVRSFTEEQKKKLLKFVTSCSRPPLLGFKDLYPSFCIQLLPNVNN-RLPTSATCMNLLKLPYFNDEQTLREKLLYAIDFDSGFELS 131          
BLAST of mRNA_F-distichus_contig99999.19428.1 vs. uniprot
Match: A0A2P2I0I0_9CRUS (HECT-type E3 ubiquitin transferase n=2 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A2P2I0I0_9CRUS)

HSP 1 Score: 117 bits (294), Expect = 7.860e-29
Identity = 56/88 (63.64%), Postives = 71/88 (80.68%), Query Frame = 1
Query:    1 WDAIISFTPEEQGRFLKFVTSCSRPPLLGFERLNPPICVQKVPSGRNGRLPSSSTCMNLLKLPEYEDGQTLRDKLLYAISSNAGFELT 264
            W  +  F  +++G+ LKFVTSCSRPPLLGF+ L PP C+Q  PSG + RLPS++TCMNLLKLPEY D  TL++KLLY+I+SNAGFEL+
Sbjct: 1277 WQVVEQFNEKQRGQLLKFVTSCSRPPLLGFKDLCPPFCIQ--PSGSDQRLPSAATCMNLLKLPEYSDPITLKEKLLYSITSNAGFELS 1362          
BLAST of mRNA_F-distichus_contig99999.19428.1 vs. uniprot
Match: A0A6J3C6U8_GALME (HECT-type E3 ubiquitin transferase n=1 Tax=Galleria mellonella TaxID=7137 RepID=A0A6J3C6U8_GALME)

HSP 1 Score: 107 bits (268), Expect = 2.720e-28
Identity = 52/88 (59.09%), Postives = 66/88 (75.00%), Query Frame = 1
Query:    1 WDAIISFTPEEQGRFLKFVTSCSRPPLLGFERLNPPICVQKVPSGRNGRLPSSSTCMNLLKLPEYEDGQTLRDKLLYAISSNAGFELT 264
            W  + +FT +++ + LKFVTSCSRPPLLGF+ L PP C+Q   +G + RLPSSSTCMNLLKLPE +    L +KLLYAI + AGFEL+
Sbjct:   44 WKVVENFTDDQRRQLLKFVTSCSRPPLLGFKDLQPPFCIQS--AGASDRLPSSSTCMNLLKLPEIQSEDLLAEKLLYAIQAGAGFELS 129          
BLAST of mRNA_F-distichus_contig99999.19428.1 vs. uniprot
Match: A0A026WIC3_OOCBI (HECT-type E3 ubiquitin transferase n=1 Tax=Ooceraea biroi TaxID=2015173 RepID=A0A026WIC3_OOCBI)

HSP 1 Score: 115 bits (288), Expect = 5.040e-28
Identity = 54/88 (61.36%), Postives = 70/88 (79.55%), Query Frame = 1
Query:    1 WDAIISFTPEEQGRFLKFVTSCSRPPLLGFERLNPPICVQKVPSGRNGRLPSSSTCMNLLKLPEYEDGQTLRDKLLYAISSNAGFELT 264
            W  +  F  +++G+ LKFVTSCSRPPLLGF+ L+PP C+Q   +G   RLP+SSTCMNLLKLPE++D +TLR+KLLYAI + AGFEL+
Sbjct:  980 WKVVNEFNDQQKGQLLKFVTSCSRPPLLGFKELDPPFCIQH--AGSVDRLPTSSTCMNLLKLPEFQDEKTLREKLLYAIQAGAGFELS 1065          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig99999.19428.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKM0_ECTSI9.960e-4384.09HECT-type E3 ubiquitin transferase n=2 Tax=Ectocar... [more]
A0A7R9Y9Y8_9STRA1.570e-3367.05HECT-type E3 ubiquitin transferase n=1 Tax=Pinguio... [more]
A0A835YYA3_9STRA3.890e-3368.54HECT-type E3 ubiquitin transferase n=1 Tax=Tribone... [more]
A0A7S2G4K7_9STRA9.390e-3263.33HECT-type E3 ubiquitin transferase n=1 Tax=Florenc... [more]
W7TQY7_9STRA3.510e-3064.44HECT-type E3 ubiquitin transferase n=3 Tax=Monodop... [more]
A0A8J8WDZ8_CHIOP5.090e-3062.50HECT-type E3 ubiquitin transferase n=1 Tax=Chionoe... [more]
A0A183IZS6_9BILA1.240e-2961.36HECT-type E3 ubiquitin transferase n=1 Tax=Sobolip... [more]
A0A2P2I0I0_9CRUS7.860e-2963.64HECT-type E3 ubiquitin transferase n=2 Tax=Hironde... [more]
A0A6J3C6U8_GALME2.720e-2859.09HECT-type E3 ubiquitin transferase n=1 Tax=Galleri... [more]
A0A026WIC3_OOCBI5.040e-2861.36HECT-type E3 ubiquitin transferase n=1 Tax=Oocerae... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig99999contigF-distichus_contig99999:1170..2102 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score159.5
Seed ortholog evalue7.5e-37
Seed eggNOG ortholog2880.D7FKM0
KEGG koko:K10589
KEGG Pathwayko04120,map04120
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004842,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0032446,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0061630,GO:0061659,GO:0070647,GO:0071704,GO:0140096,GO:1901564
EggNOG free text desc.ubiquitin-protein transferase activity
EggNOG OGsCOG5021@1,KOG0942@2759
EC2.3.2.26
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Exons2
Model size267
Cds size267
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931181.0383801-CDS-F-distichus_contig99999:1169..12531622931181.0383801-CDS-F-distichus_contig99999:1169..1253Fucus distichus monoicousCDSF-distichus_contig99999 1170..1253 -
1690886193.6801991-CDS-F-distichus_contig99999:1169..12531690886193.6801991-CDS-F-distichus_contig99999:1169..1253Fucus distichus monoicousCDSF-distichus_contig99999 1170..1253 -
1622931181.0552151-CDS-F-distichus_contig99999:1919..21021622931181.0552151-CDS-F-distichus_contig99999:1919..2102Fucus distichus monoicousCDSF-distichus_contig99999 1920..2102 -
1690886193.6915016-CDS-F-distichus_contig99999:1919..21021690886193.6915016-CDS-F-distichus_contig99999:1919..2102Fucus distichus monoicousCDSF-distichus_contig99999 1920..2102 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig99999.19428.1prot_F-distichus_contig99999.19428.1Fucus distichus monoicouspolypeptideF-distichus_contig99999 1170..2102 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig99999.19428.1

>prot_F-distichus_contig99999.19428.1 ID=prot_F-distichus_contig99999.19428.1|Name=mRNA_F-distichus_contig99999.19428.1|organism=Fucus distichus monoicous|type=polypeptide|length=89bp
WDAIISFTPEEQGRFLKFVTSCSRPPLLGFERLNPPICVQKVPSGRNGRL
PSSSTCMNLLKLPEYEDGQTLRDKLLYAISSNAGFELT*
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mRNA from alignment at F-distichus_contig99999:1170..2102-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig99999.19428.1 ID=mRNA_F-distichus_contig99999.19428.1|Name=mRNA_F-distichus_contig99999.19428.1|organism=Fucus distichus monoicous|type=mRNA|length=933bp|location=Sequence derived from alignment at F-distichus_contig99999:1170..2102- (Fucus distichus monoicous)
TGGGACGCGATCATTTCGTTTACCCCCGAGGAACAGGGGCGCTTCCTCAA GTTCGTCACATCGTGCTCGCGACCGCCGCTGCTTGGCTTCGAGCGGCTGA ACCCGCCTATCTGTGTGCAGAAGGTGCCGAGTGGACGAAACGGGCGGCTT CCCTCCAGCTCGACGTGTATGAACCTTCTCAAGGTGCGTTAGACTATAGG CCTTAAGAATCGTGTTACCATTGCTAGTTTACCAATATAATACGTAATCG TTTTTTTTTGCCCATGAGAATGTAATGTTTTTTGTTTTGTTTTTCTCCCT CCATACCCTTCCATTTAGTTTTCCTCTTTGAAAAAGAACTGATATTTCCG TTAGGGGTGGCTCCTTTGTCCAATCAAGTCAATCGCGATAATCGAGGGTC AATGTAGTATCAAAATGTAATGCGGGAGAGCATTCTACGAAGTATCTTAG GGAAACCTACACCAACCACAGCTTGCGTGTTTGAAGCACTTTCCTGGCTG AAGTCGTCAGCAGCACGCCAAGTATTAGTAAGTATATAGTACGATGATTG TCTCGGTCTAAGACGTAAGCCCGACTCGATACAATCTACATGTATAAGGC TACATAGAATCTGCCTGCACAAGAATATCCCGATATTTTTTCACACTCTA CTGGAGAATTTCCATGGAATGCACGCTTTTACTGGGGTTCTCAGGTCCTA TTTTTCAGTCTTGGAAGAAAAGCTCACGTAATGTAATTGCTACTACGGTA CTACTACGTGTTTTGGCGATGAAACGCCAATAATCTATTGGAAACCTTTC TCTCGAATACCTCTCGCCTTTGGGGTTTTTCCACCGCGTACATGTACAGC TACCCGAGTACGAGGACGGACAAACCTTGAGAGACAAGCTGCTCTACGCC ATCAGCTCGAACGCGGGGTTCGAGCTCACGTAG
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Coding sequence (CDS) from alignment at F-distichus_contig99999:1170..2102-

>mRNA_F-distichus_contig99999.19428.1 ID=mRNA_F-distichus_contig99999.19428.1|Name=mRNA_F-distichus_contig99999.19428.1|organism=Fucus distichus monoicous|type=CDS|length=534bp|location=Sequence derived from alignment at F-distichus_contig99999:1170..2102- (Fucus distichus monoicous)
TGGGACGCGATCATTTCGTTTACCCCCGAGGAACAGGGGCGCTTCCTCAA
GTTCGTCACATCGTGCTCGCGACCGCCGCTGCTTGGCTTCGAGCGGCTGA
ACCCGCCTATCTGTGTGCAGAAGGTGCCGAGTGGACGAAACGGGCGGCTT
CCCTCCAGCTCGACGTGTATGAACCTTCTCAAGTGGGACGCGATCATTTC
GTTTACCCCCGAGGAACAGGGGCGCTTCCTCAAGTTCGTCACATCGTGCT
CGCGACCGCCGCTGCTTGGCTTCGAGCGGCTGAACCCGCCTATCTGTGTG
CAGAAGGTGCCGAGTGGACGAAACGGGCGGCTTCCCTCCAGCTCGACGTG
TATGAACCTTCTCAAGCTACCCGAGTACGAGGACGGACAAACCTTGAGAG
ACAAGCTGCTCTACGCCATCAGCTCGAACGCGGGGTTCGAGCTCACGTAG
CTACCCGAGTACGAGGACGGACAAACCTTGAGAGACAAGCTGCTCTACGC
CATCAGCTCGAACGCGGGGTTCGAGCTCACGTAG
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