mRNA_F-distichus_contig99980.19425.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_F-distichus_contig99980.19425.1
Unique Name	mRNA_F-distichus_contig99980.19425.1
Type	mRNA
Organism	Fucus distichus monoicous (Fucus distichus monoicous)

Homology

[Close]

BLAST of mRNA_F-distichus_contig99980.19425.1 vs. uniprot
Match: A0A6H5JKT8_9PHAE (Conserved oligomeric Golgi complex subunit 3 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKT8_9PHAE)

HSP 1 Score: 164 bits (414), Expect = 6.570e-45
Identity = 104/163 (63.80%), Postives = 115/163 (70.55%), Query Frame = 1

Query:    1 QVTSKTQALHATCESLLEEQKRLEAQVNALSFPLERFRALEELGPALGLPFASPVRGDEVSKNGVAATARRSSGRISYGXXXXXXXXXXXXXXXXXXXXXXXPA--GSALLHPGSDDFAQALARAASAMSYLRGHPEFLESPQYIEKYSQLISRALALVKNQV 483
            QVTSKTQALHATCESLL EQ  LEAQV ALS PL+RFRAL+ELGPALGLPFAS  +       G     RR+S  +  G                XXXXXXX    G  LLHPGSD+FA+ALARAASAM+YLR HPEFLE PQY++KY QL+SRALALVKNQV
Sbjct:  134 QVTSKTQALHATCESLLSEQHTLEAQVKALSAPLQRFRALQELGPALGLPFAS--QSSASGAGGEGGAPRRTSVGVGAGGDGARWGGGTGLVRRAXXXXXXXXXXXGRVLLHPGSDEFAEALARAASAMAYLRRHPEFLEGPQYVDKYVQLLSRALALVKNQV 294

[Close]

BLAST of mRNA_F-distichus_contig99980.19425.1 vs. uniprot
Match: D7G064_ECTSI (Conserved oligomeric Golgi complex subunit 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G064_ECTSI)

HSP 1 Score: 158 bits (400), Expect = 6.550e-42
Identity = 104/163 (63.80%), Postives = 115/163 (70.55%), Query Frame = 1

Query:    1 QVTSKTQALHATCESLLEEQKRLEAQVNALSFPLERFRALEELGPALGLPFASPVRGDEVSKNGVAATARRSSGRISYGXXXXXXXXXXXXXXXXXXXXXXXPA--GSALLHPGSDDFAQALARAASAMSYLRGHPEFLESPQYIEKYSQLISRALALVKNQV 483
            QVTSKTQALHATCESLL EQ  LEAQV ALS PL+RF AL ELGPALGLPFAS  +       G     RR+S  +  G              XXXXXXXXX    G  LLHPGSD+FA+ALARAASAM+YLR HPEF+E PQY++KY QL+SRALALVKNQV
Sbjct:  134 QVTSKTQALHATCESLLSEQHTLEAQVKALSAPLQRFGALRELGPALGLPFAS--QSSAGGAGGEDGAPRRASVGVGAGGDGARWGGGTGLVRXXXXXXXXXXXXXGRVLLHPGSDEFAEALARAASAMAYLRRHPEFIEGPQYVDKYVQLLSRALALVKNQV 294

The following BLAST results are available for this feature:

BLAST of mRNA_F-distichus_contig99980.19425.1 vs. uniprot

BLAST of mRNA_F-distichus_contig99980.19425.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A6H5JKT8_9PHAE	6.570e-45	63.80	Conserved oligomeric Golgi complex subunit 3 n=1 T...	[more]
D7G064_ECTSI	6.550e-42	63.80	Conserved oligomeric Golgi complex subunit 3 n=1 T...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
F-distichus_contig99980	contig	F-distichus_contig99980:391..1419 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	162.2
Seed ortholog evalue	2.1e-37
Seed eggNOG ortholog	2880.D7G064
Preferred name	COG3
KEGG ko	ko:K20290
Hectar predicted targeting category	other localisation
GOs	GO:0000003,GO:0000139,GO:0000280,GO:0000910,GO:0003006,GO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005794,GO:0005802,GO:0005829,GO:0005886,GO:0006403,GO:0006464,GO:0006486,GO:0006807,GO:0006810,GO:0006888,GO:0006890,GO:0006891,GO:0006996,GO:0007030,GO:0007049,GO:0007112,GO:0007140,GO:0007275,GO:0007276,GO:0007548,GO:0008104,GO:0008150,GO:0008152,GO:0008406,GO:0008565,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009653,GO:0009887,GO:0009987,GO:0010256,GO:0012505,GO:0015031,GO:0015833,GO:0015931,GO:0016020,GO:0016043,GO:0016192,GO:0017119,GO:0019538,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0030334,GO:0031090,GO:0031647,GO:0031984,GO:0032501,GO:0032502,GO:0032504,GO:0032588,GO:0032879,GO:0032991,GO:0033036,GO:0033206,GO:0033227,GO:0033365,GO:0034613,GO:0034645,GO:0035262,GO:0036211,GO:0040012,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045137,GO:0045184,GO:0046907,GO:0048193,GO:0048232,GO:0048285,GO:0048513,GO:0048608,GO:0048609,GO:0048731,GO:0048856,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0050821,GO:0051179,GO:0051234,GO:0051236,GO:0051270,GO:0051301,GO:0051321,GO:0051641,GO:0051649,GO:0051704,GO:0061458,GO:0061640,GO:0065007,GO:0065008,GO:0070085,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0098588,GO:0098791,GO:0099023,GO:0140013,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1903046,GO:2000145
EggNOG free text desc.	intra-Golgi vesicle-mediated transport
EggNOG OGs	KOG2604@1,KOG2604@2759
COG Functional cat.	S
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko04131
Exons	2
Model size	483
Cds size	483
Stop	0
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622931180.8452363-CDS-F-distichus_contig99980:390..744	1622931180.8452363-CDS-F-distichus_contig99980:390..744	Fucus distichus monoicous	CDS	F-distichus_contig99980 391..744 +
1690886193.600235-CDS-F-distichus_contig99980:390..744	1690886193.600235-CDS-F-distichus_contig99980:390..744	Fucus distichus monoicous	CDS	F-distichus_contig99980 391..744 +
1622931180.8702488-CDS-F-distichus_contig99980:1290..1419	1622931180.8702488-CDS-F-distichus_contig99980:1290..1419	Fucus distichus monoicous	CDS	F-distichus_contig99980 1291..1419 +
1690886193.6123197-CDS-F-distichus_contig99980:1290..1419	1690886193.6123197-CDS-F-distichus_contig99980:1290..1419	Fucus distichus monoicous	CDS	F-distichus_contig99980 1291..1419 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_F-distichus_contig99980.19425.1	prot_F-distichus_contig99980.19425.1	Fucus distichus monoicous	polypeptide	F-distichus_contig99980 391..1419 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at F-distichus_contig99980:391..1419+
coding sequence from alignment at F-distichus_contig99980:391..1419+

protein sequence of mRNA_F-distichus_contig99980.19425.1

>prot_F-distichus_contig99980.19425.1 ID=prot_F-distichus_contig99980.19425.1|Name=mRNA_F-distichus_contig99980.19425.1|organism=Fucus distichus monoicous|type=polypeptide|length=161bp
QVTSKTQALHATCESLLEEQKRLEAQVNALSFPLERFRALEELGPALGLP
FASPVRGDEVSKNGVAATARRSSGRISYGGGGTVVGGGSGNLRRSSSFGG
GGPAGSALLHPGSDDFAQALARAASAMSYLRGHPEFLESPQYIEKYSQLI
SRALALVKNQV

mRNA from alignment at F-distichus_contig99980:391..1419+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_F-distichus_contig99980.19425.1 ID=mRNA_F-distichus_contig99980.19425.1|Name=mRNA_F-distichus_contig99980.19425.1|organism=Fucus distichus monoicous|type=mRNA|length=1029bp|location=Sequence derived from alignment at F-distichus_contig99980:391..1419+ (Fucus distichus monoicous)
CAGGTGACGTCGAAAACGCAAGCGCTGCACGCCACGTGCGAGTCCCTCCT
GGAGGAACAAAAACGCCTCGAGGCTCAAGTGAACGCCCTCTCCTTCCCGC
TGGAGCGCTTCAGAGCTCTGGAAGAGCTCGGCCCGGCGCTAGGTCTACCC
TTCGCATCCCCCGTCAGAGGTGACGAGGTCTCAAAGAACGGTGTTGCCGC
TACCGCCAGGAGATCGTCGGGTAGGATTTCTTACGGAGGAGGCGGAACGG
TCGTGGGTGGGGGCAGTGGAAACCTACGGAGGTCTTCGTCTTTCGGGGGA
GGCGGACCGGCCGGGAGTGCTCTGCTGCATCCCGGCAGCGATGATTTTGC
GCAGGTGGGTTAGGTTTACGGCGTGGGATTCGTGGTGGGTGATCGGCTTG
TAACATGTTTTTCACCAAGCGTCAGTTGTTGCACCCGAAGTACCGTGAAG
CACCACCTGATACACTGCCAGTCATATGTACACATGTATGTATATACATC
ACTCCGTAATTTGTTTTTACTTTGATAAGCGAGTGACTGTTCGGTAAGAG
TCCTACCTACACAGTGCAGCAAAATTATGTTTGTAACTAATGCCACTCTT
ATTTTCACGTTGCCGTAACTTCGATCGTCCAGCATCCCCCATGTTCGAGA
GCTTGAAACAGCGCGTATTTGACTTCGGATCGAACGGCCGTGTACGCGCG
GAGGGATACCAGTTGTTTTTTTTAAACAATGTAATGTTTTGGACCACTCT
GGTGGGAAACCATACAAAAAAAACAAGTCAAGACACAGGTTGTTACTCTA
CTCACGAGGTCGTCCGTCTGTACTGGCTACGCCTCGTACCCCTTTCGCCC
GCCGTCTGCACTGCCTCGCTGTCAAAACTTTGAAACCCGGTCGGTCGCAG
GCTCTGGCACGAGCAGCGTCCGCCATGAGTTACTTGCGGGGGCACCCGGA
GTTCCTCGAAAGTCCCCAGTACATCGAGAAGTACTCTCAGCTTATCTCCC
GTGCGCTTGCATTGGTGAAGAACCAGGTC

Coding sequence (CDS) from alignment at F-distichus_contig99980:391..1419+

>mRNA_F-distichus_contig99980.19425.1 ID=mRNA_F-distichus_contig99980.19425.1|Name=mRNA_F-distichus_contig99980.19425.1|organism=Fucus distichus monoicous|type=CDS|length=966bp|location=Sequence derived from alignment at F-distichus_contig99980:391..1419+ (Fucus distichus monoicous)
CAGGTGACGTCGAAAACGCAAGCGCTGCACGCCACGTGCGAGTCCCTCCT
GGAGGAACAAAAACGCCTCGAGGCTCAAGTGAACGCCCTCTCCTTCCCGC
TGGAGCGCTTCAGAGCTCTGGAAGAGCTCGGCCCGGCGCTAGGTCTACCC
TTCGCATCCCCCGTCAGAGGTGACGAGGTCTCAAAGAACGGTGTTGCCGC
TACCGCCAGGAGATCGTCGGGTAGGATTTCTTACGGAGGAGGCGGAACGG
TCGTGGGTGGGGGCAGTGGAAACCTACGGAGGTCTTCGTCTTTCGGGGGA
GGCGGACCGGCCGGGAGTGCTCTGCTGCATCCCGGCAGCGATGATTTTGC
GCAGCAGGTGACGTCGAAAACGCAAGCGCTGCACGCCACGTGCGAGTCCC
TCCTGGAGGAACAAAAACGCCTCGAGGCTCAAGTGAACGCCCTCTCCTTC
CCGCTGGAGCGCTTCAGAGCTCTGGAAGAGCTCGGCCCGGCGCTAGGTCT
ACCCTTCGCATCCCCCGTCAGAGGTGACGAGGTCTCAAAGAACGGTGTTG
CCGCTACCGCCAGGAGATCGTCGGGTAGGATTTCTTACGGAGGAGGCGGA
ACGGTCGTGGGTGGGGGCAGTGGAAACCTACGGAGGTCTTCGTCTTTCGG
GGGAGGCGGACCGGCCGGGAGTGCTCTGCTGCATCCCGGCAGCGATGATT
TTGCGCAGGCTCTGGCACGAGCAGCGTCCGCCATGAGTTACTTGCGGGGG
CACCCGGAGTTCCTCGAAAGTCCCCAGTACATCGAGAAGTACTCTCAGCT
TATCTCCCGTGCGCTTGCATTGGTGAAGAACCAGGTCGCTCTGGCACGAG
CAGCGTCCGCCATGAGTTACTTGCGGGGGCACCCGGAGTTCCTCGAAAGT
CCCCAGTACATCGAGAAGTACTCTCAGCTTATCTCCCGTGCGCTTGCATT
GGTGAAGAACCAGGTC