mRNA_F-distichus_contig9990.19422.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig9990.19422.1
Unique NamemRNA_F-distichus_contig9990.19422.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig9990.19422.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig9990contigF-distichus_contig9990:1971..5035 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-07_003250.1
Exons2
Model size325
Cds size324
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig9990.19422.1prot_F-distichus_contig9990.19422.1Fucus distichus monoicouspolypeptideF-distichus_contig9990 1971..5034 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931180.4355428-CDS-F-distichus_contig9990:1970..20131622931180.4355428-CDS-F-distichus_contig9990:1970..2013Fucus distichus monoicousCDSF-distichus_contig9990 1971..2013 -
1690886193.446011-CDS-F-distichus_contig9990:1970..20131690886193.446011-CDS-F-distichus_contig9990:1970..2013Fucus distichus monoicousCDSF-distichus_contig9990 1971..2013 -
1622931180.44925-CDS-F-distichus_contig9990:4753..50341622931180.44925-CDS-F-distichus_contig9990:4753..5034Fucus distichus monoicousCDSF-distichus_contig9990 4754..5034 -
1690886193.4600365-CDS-F-distichus_contig9990:4753..50341690886193.4600365-CDS-F-distichus_contig9990:4753..5034Fucus distichus monoicousCDSF-distichus_contig9990 4754..5034 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931180.465054-UTR-F-distichus_contig9990:5034..50351622931180.465054-UTR-F-distichus_contig9990:5034..5035Fucus distichus monoicousUTRF-distichus_contig9990 5035..5035 -
1690886193.47227-UTR-F-distichus_contig9990:5034..50351690886193.47227-UTR-F-distichus_contig9990:5034..5035Fucus distichus monoicousUTRF-distichus_contig9990 5035..5035 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig9990.19422.1

>prot_F-distichus_contig9990.19422.1 ID=prot_F-distichus_contig9990.19422.1|Name=mRNA_F-distichus_contig9990.19422.1|organism=Fucus distichus monoicous|type=polypeptide|length=108bp
MKRALGLGHPHHANPNLVMPWASSRRWSLIVLMLGSSARRSSPVVLNSPP
SRSFVPVPEGISTGLFCRSQVESRLGVRGFLVGDVAKRWIRRASAHGREA
DGEDIEGT
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mRNA from alignment at F-distichus_contig9990:1971..5035-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig9990.19422.1 ID=mRNA_F-distichus_contig9990.19422.1|Name=mRNA_F-distichus_contig9990.19422.1|organism=Fucus distichus monoicous|type=mRNA|length=3065bp|location=Sequence derived from alignment at F-distichus_contig9990:1971..5035- (Fucus distichus monoicous)
CATGAAACGTGCTTTAGGTCTCGGACACCCTCACCACGCCAACCCTAACC
TGGTGATGCCGTGGGCATCAAGCAGGAGATGGTCACTTATTGTCCTGATG
CTCGGATCTTCCGCCAGGCGATCAAGTCCCGTCGTCTTGAATTCCCCACC
TTCGAGGTCGTTCGTTCCAGTTCCAGAAGGGATATCAACAGGGCTATTCT
GCCGCAGCCAAGTCGAATCACGCCTCGGAGTGAGGGGCTTTCTCGTAGGT
GACGTGGCGAAGAGATGGATTCGAAGAGCAAGGTAACTAGGTTGATGTTC
GTCCCGCGGATGTGGCGCTGATCGTACAATCGCTGCATGATCCCTTCCTC
AAGTTACAGCACGCACGCACTCGTCACCTCTCTTCATTACTGTAAATAGT
ATACATCGGCACCGCTGTCGGCACCTTAGACTATACTGTGATAAGGTTAC
TACTTGTCCTATTTTTTTTTAAAGCGTGAGAACGTGAGTAGGTAAAACTC
AACCATTGGTTGACGAATTGTAAGAGTGCTCAACTTGCATCGCGATAAAA
AATCGTAAGGCGCGAACCGGGGAGAGATGGGAAGATCCTTAGCTACCACA
GGCAGGGTGGAATGAGGCCCATCGGCTATAAGTGAGATAAATAGACCATA
TTCAGTCCTTACAATACTCTCCCCCCACATAATTTGACTAAAGTATAAAT
AGCCTGTGATCAAGCGGACTAATAATAATATTAATAGTTAATTCGATCAA
GTTTTGAGTGTATGCATAGGAGCATAATCTCTTTCTTTTTCATATGGAGT
GCCATTTTTTCATCTCCAACAGATATTCTGCCCAGGATTTCGGTGAGATA
AAGAAGCTAGCTCAGCGGGATTCGACCCGGTCCCGGTCGACGCCAGTGCG
ATAAGATTACTATTACACCACAGGGCAAAATTCAAGTGACAATTACCACC
CCCTGGCCTGCCCCTGCCGGGGTGGGCCGAGGTCCGCCAGTGGGCGTATA
ACACGCAAAGAGCACCCCACAAAGACGGAGACACGAGCCCGAGCCTCGTA
CTGACGAGGGTCCTGAGTTTGGTAGATGGGAGTTACCGCGATCGCGAGAT
CGGGGTATCTTCTATCGGTCCAGCTTTGGCAGTAGCATGGGGTTGAACCC
CAATGCCCCGGGCATGGACACCGGGGCTATACAGCAGCGGAGAGCGCAGT
GGGGACAGCCCAGATAGGAATGGAAGGGCCGCACACTGCGTGGGTATGCA
CCACAAACGCGAGGAAGGAATAGAGTCGGACGGAGTAGGATGGTTGAACT
TACCCGTGAACCAAGGCAAGCACCGGGTTGACAAGCTGGAGAGTTCGCAC
AGCGATTCGCGTTTGTGTTGACTTTTCTGGGTCCTTTTACTTCTCTGATG
TTTCGTATGTACCCTTTTGGGGTATAATAGTTAGCCTGTGACCACGGAAG
GCGCTCGCGTCAGTTGGACCAGTACGGATGTTGGAAGGTACTGAGCATAG
ATCATAACGGTTTTTAATGTCAAGACAACAACAACGTTTCTCCGAGACAT
TTAACTGTTGACACAATTCCTTATTTCTGCATGTTGCTACCCTCTTATCT
ATGTACTACAGCAGTGTCATATGTTTTGTTCAGTTTGGTGGCTCTGCATG
GTGATTAATATAGACTAAGTGTACAGTATAACGGTGATCTTCTCCTCGAC
ATTATACTGTTGACCCAAGGTTATTATCATCGAGGAACCCGTTTAAATAC
CATGGAGTGGCTTTGCCTTTACAGCCCATGTAACAGTATATTATTACGAC
CATGTTTGATGATGTACTATTATACATTGTTTCTGTTTGTTGTTGGTGTT
TTTCTGGTTTCCCTGCATGGCGATTAATGTAAGTGTACAGTATAACGGTG
GGCTTCTTCCCGACATTCTACTGTTGACCCAAGGTTACTACCATCGGGGA
ACCCGTTTAAATGCCATGAAGAGGTTTTGTATATGCAGCCTATGATCCCA
CCTGATGAGCGTTTTGACATATTTCATTTCCCCCCTGGGTGGGGATCCTC
AGAAGGTCTAGGCGCGTTCTGACTTTTCTCTTAAACAACAACTTGGGGGA
TGCTCAGAAGGTCTAGATGCTTTCAGATTTTTCTTCAAACGACAACTCGG
TAATCAGTTCTTTATAACAATACTTTACCGGTATACGTGTAGGTCTATTG
CGCTATTACGTAATAGGGCAGGTTATAGGGAAAAACAAAAACAAACCAAG
GCAGGTACAGATTCTTGGCCGAGAATGCATGCACACGAAAGGAATTTTTT
CAGAAACACCGTGTGTTCTGTACCGTAGACACGCGAGGCGCGTATTAGTT
GGTCCAGACCTGCCAAGGCAGCACTCGTTCAGAACTACCTTGAGGTTTAC
TGGCACTGTGCCGGCGGACTCTCGGCAGTGAACGCCATCGATACGCAATT
GCTTGACCCGATAAACTCGGGACTGACCCGATGGCGTATGGCGGTTTAAA
ATAAATAAATGGACGCCGCCGCGGAAGCGGAACTATGGAGGAATCCCGTA
AGTAAGCACCAGATTCAGCCTCAGTATGGAGATGAGCAGGCTGACGCGGG
ACGGGACTGCCGAACCCGTCTCGCGAGACCAAATTCTCAGGCGCGAACGC
GGACAGGGAAATAGTCTTCACTTTCCCTGTTCAGCTGACCACGAGCAGGA
TTGGCAACCATACCCGGTTGACCCATACTCTTGCTATATGTATAACTATA
CATACCTACATGGACAGAGGCGCGTGGCGCTCTGTCAAGTACCAGGTTTC
CGCAGGTGCACTACTGTGATTCCTCACCACTTGGGCAATACACGTCAAAT
CCGTAGCTCTGAAGCTGTGGAGCGCGCTCTTTGGAGCGGACAACGTGCGC
AGCTTTTAACGATTCCATCACCACGGTTAACGTGCAACTCAGCTATAGGT
TTCGGTGAGTGGTTGGCCTGCATTGACTGGCAACAAGTCTTTCCCGATCT
TCCAATATTCCACGCCTTACAGTGCCCACGGCCGAGAAGCGGATGGCGAA
GACATTGAGGGAACA
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Coding sequence (CDS) from alignment at F-distichus_contig9990:1971..5035-

>mRNA_F-distichus_contig9990.19422.1 ID=mRNA_F-distichus_contig9990.19422.1|Name=mRNA_F-distichus_contig9990.19422.1|organism=Fucus distichus monoicous|type=CDS|length=648bp|location=Sequence derived from alignment at F-distichus_contig9990:1971..5035- (Fucus distichus monoicous)
ATGAAACGTGCTTTAGGTCTCGGACACCCTCACCACGCCAACCCTAACCT
GGTGATGCCGTGGGCATCAAGCAGGAGATGGTCACTTATTGTCCTGATGC
TCGGATCTTCCGCCAGGCGATCAAGTCCCGTCGTCTTGAATTCCCCACCT
TCGAGGTCGTTCGTTCCAGTTCCAGAAGGGATATCAACAGGGCTATTCTG
CCGCAGCCAAGTCGAATCACGCCTCGGAGTGAGGGGCTTTCTCGTAGGTG
ACGTGGCGAAGAGATGGATTCGAAGAGCAAGATGAAACGTGCTTTAGGTC
TCGGACACCCTCACCACGCCAACCCTAACCTGGTGATGCCGTGGGCATCA
AGCAGGAGATGGTCACTTATTGTCCTGATGCTCGGATCTTCCGCCAGGCG
ATCAAGTCCCGTCGTCTTGAATTCCCCACCTTCGAGGTCGTTCGTTCCAG
TTCCAGAAGGGATATCAACAGGGCTATTCTGCCGCAGCCAAGTCGAATCA
CGCCTCGGAGTGAGGGGCTTTCTCGTAGGTGACGTGGCGAAGAGATGGAT
TCGAAGAGCAAGTGCCCACGGCCGAGAAGCGGATGGCGAAGACATTGAGG
GAACATGCCCACGGCCGAGAAGCGGATGGCGAAGACATTGAGGGAACA
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