mRNA_F-distichus_contig99655.19406.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig99655.19406.1
Unique NamemRNA_F-distichus_contig99655.19406.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig99655.19406.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig99655contigF-distichus_contig99655:143..734 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size228
Cds size219
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig99655.19406.1prot_F-distichus_contig99655.19406.1Fucus distichus monoicouspolypeptideF-distichus_contig99655 150..734 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931178.2686713-UTR-F-distichus_contig99655:142..1491622931178.2686713-UTR-F-distichus_contig99655:142..149Fucus distichus monoicousUTRF-distichus_contig99655 143..149 -
1690886192.4046917-UTR-F-distichus_contig99655:142..1491690886192.4046917-UTR-F-distichus_contig99655:142..149Fucus distichus monoicousUTRF-distichus_contig99655 143..149 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931178.283321-CDS-F-distichus_contig99655:149..2421622931178.283321-CDS-F-distichus_contig99655:149..242Fucus distichus monoicousCDSF-distichus_contig99655 150..242 -
1690886192.4184403-CDS-F-distichus_contig99655:149..2421690886192.4184403-CDS-F-distichus_contig99655:149..242Fucus distichus monoicousCDSF-distichus_contig99655 150..242 -
1622931178.2969456-CDS-F-distichus_contig99655:608..7341622931178.2969456-CDS-F-distichus_contig99655:608..734Fucus distichus monoicousCDSF-distichus_contig99655 609..734 -
1690886192.4319048-CDS-F-distichus_contig99655:608..7341690886192.4319048-CDS-F-distichus_contig99655:608..734Fucus distichus monoicousCDSF-distichus_contig99655 609..734 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig99655.19406.1

>prot_F-distichus_contig99655.19406.1 ID=prot_F-distichus_contig99655.19406.1|Name=mRNA_F-distichus_contig99655.19406.1|organism=Fucus distichus monoicous|type=polypeptide|length=73bp
VEASADPGNEEGNEEACLGSDGAIEEGIHLIDDGGALQEDTPKLTSPNYK
DCRQSLDGRSKSPGVEGILVRT*
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mRNA from alignment at F-distichus_contig99655:143..734-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig99655.19406.1 ID=mRNA_F-distichus_contig99655.19406.1|Name=mRNA_F-distichus_contig99655.19406.1|organism=Fucus distichus monoicous|type=mRNA|length=592bp|location=Sequence derived from alignment at F-distichus_contig99655:143..734- (Fucus distichus monoicous)
GTGGAGGCATCGGCCGATCCGGGGAACGAGGAGGGAAATGAGGAGGCGTG
CTTGGGAAGCGATGGCGCTATTGAGGAAGGAATCCATTTGATCGACGATG
GAGGGGCGCTTCAGGAAGACACTCCGGTACGATTATACTGCGTTTCGACT
GTTATATTACTATTATACTACTATAATACTGCTGTATTATCTATGGCCAA
AAATGGGAGCTCCCGGTGCTTTTCTGGCCAAAAACGGGTGTACCTGGAAA
CAATAGCGGCAGAGAGTGTTGTTGGCCGTATCTGATTGGCCAACACCCAA
TTTCTCCTGGTTTTGGCCAAAAGGGACCGGGTACTCCCGGTAACAGCTAT
TTTGCTCAGCTTCCACCCGTTTTTGGCCATTTTTGTTCCGCCACAAGTCT
TAGAACAATTAACAGCAAAATTTCGACCAGGTGACGTGGAAATTGACAAT
TTTGGGCAACACTTTTTTGTATCCCCCGGTTGTACCCCTCAGAAGCTTAC
GAGCCCGAACTACAAAGATTGTCGTCAAAGTCTTGATGGAAGATCAAAGA
GCCCAGGAGTCGAAGGAATCCTTGTACGGACGTGAGACGGAC
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Coding sequence (CDS) from alignment at F-distichus_contig99655:143..734-

>mRNA_F-distichus_contig99655.19406.1 ID=mRNA_F-distichus_contig99655.19406.1|Name=mRNA_F-distichus_contig99655.19406.1|organism=Fucus distichus monoicous|type=CDS|length=438bp|location=Sequence derived from alignment at F-distichus_contig99655:143..734- (Fucus distichus monoicous)
GTGGAGGCATCGGCCGATCCGGGGAACGAGGAGGGAAATGAGGAGGCGTG
CTTGGGAAGCGATGGCGCTATTGAGGAAGGAATCCATTTGATCGACGATG
GAGGGGCGCTTCAGGAAGACACTCCGGTGGAGGCATCGGCCGATCCGGGG
AACGAGGAGGGAAATGAGGAGGCGTGCTTGGGAAGCGATGGCGCTATTGA
GGAAGGAATCCATTTGATCGACGATGGAGGGGCGCTTCAGGAAGACACTC
CGAAGCTTACGAGCCCGAACTACAAAGATTGTCGTCAAAGTCTTGATGGA
AGATCAAAGAGCCCAGGAGTCGAAGGAATCCTTGTACGGACGTGAAAGCT
TACGAGCCCGAACTACAAAGATTGTCGTCAAAGTCTTGATGGAAGATCAA
AGAGCCCAGGAGTCGAAGGAATCCTTGTACGGACGTGA
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