mRNA_F-distichus_contig99627.19404.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig99627.19404.1
Unique NamemRNA_F-distichus_contig99627.19404.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig99627.19404.1 vs. uniprot
Match: D7FI71_ECTSI (Ribosomal_L14e domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FI71_ECTSI)

HSP 1 Score: 59.3 bits (142), Expect = 4.120e-10
Identity = 26/34 (76.47%), Postives = 30/34 (88.24%), Query Frame = 1 
Query:   10 GFKRFVEIGRVAMISYGPHEGKLAVIIDVVDNNK 111
            GF RFVEIGRV +++YGP EGKLAVI+DV DNNK
Sbjct:    2 GFTRFVEIGRVVLVNYGPDEGKLAVILDVADNNK 35
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BLAST of mRNA_F-distichus_contig99627.19404.1 vs. uniprot
Match: A0A8J4UBA5_CLAMG (60S ribosomal protein L14 (Fragment) n=2 Tax=cellular organisms TaxID=131567 RepID=A0A8J4UBA5_CLAMG)

HSP 1 Score: 58.2 bits (139), Expect = 8.320e-10
Identity = 24/33 (72.73%), Postives = 30/33 (90.91%), Query Frame = 1 
Query:   13 FKRFVEIGRVAMISYGPHEGKLAVIIDVVDNNK 111
            FKRFVEIGRVA +++GPHEGKL VI+DV+D N+
Sbjct:    3 FKRFVEIGRVAYVAFGPHEGKLVVIVDVIDQNR 35
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BLAST of mRNA_F-distichus_contig99627.19404.1 vs. uniprot
Match: A0A835YLN7_9STRA (Ribosomal protein L14-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLN7_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 8.560e-10
Identity = 27/34 (79.41%), Postives = 30/34 (88.24%), Query Frame = 1 
Query:   10 GFKRFVEIGRVAMISYGPHEGKLAVIIDVVDNNK 111
            GF RFVEIGRVA+I+YGP EGKL  IIDVVD+NK
Sbjct:    2 GFTRFVEIGRVALINYGPDEGKLCTIIDVVDHNK 35
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BLAST of mRNA_F-distichus_contig99627.19404.1 vs. uniprot
Match: A0A498N3B3_LABRO (60S ribosomal protein L14 n=1 Tax=Labeo rohita TaxID=84645 RepID=A0A498N3B3_LABRO)

HSP 1 Score: 58.9 bits (141), Expect = 1.070e-9
Identity = 25/33 (75.76%), Postives = 30/33 (90.91%), Query Frame = 1 
Query:   13 FKRFVEIGRVAMISYGPHEGKLAVIIDVVDNNK 111
            FKRFVEIGRVA +++GPHEGKL VIIDV+D N+
Sbjct:   29 FKRFVEIGRVAFVAFGPHEGKLVVIIDVIDQNR 61
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BLAST of mRNA_F-distichus_contig99627.19404.1 vs. uniprot
Match: UPI001E3D70B5 (hypothetical protein n=1 Tax=Exiguobacterium aurantiacum TaxID=33987 RepID=UPI001E3D70B5)

HSP 1 Score: 57.4 bits (137), Expect = 1.430e-9
Identity = 24/33 (72.73%), Postives = 29/33 (87.88%), Query Frame = 1 
Query:   13 FKRFVEIGRVAMISYGPHEGKLAVIIDVVDNNK 111
            FKRFVEIGRVA I++GPHEGKL  I+DV+D N+
Sbjct:    2 FKRFVEIGRVAFIAFGPHEGKLVAIVDVIDQNR 34
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BLAST of mRNA_F-distichus_contig99627.19404.1 vs. uniprot
Match: A9U2F2_PHYPA (Predicted protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9U2F2_PHYPA)

HSP 1 Score: 57.4 bits (137), Expect = 2.320e-9
Identity = 24/33 (72.73%), Postives = 30/33 (90.91%), Query Frame = 1 
Query:   13 FKRFVEIGRVAMISYGPHEGKLAVIIDVVDNNK 111
            F+RFVEIGRVA+I+YGPH GKL VI+DV+D N+
Sbjct:    3 FRRFVEIGRVALINYGPHYGKLVVIVDVIDQNR 35
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BLAST of mRNA_F-distichus_contig99627.19404.1 vs. uniprot
Match: A0A8C1M8H3_CYPCA (60S ribosomal protein L14 n=1 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C1M8H3_CYPCA)

HSP 1 Score: 57.4 bits (137), Expect = 3.420e-9
Identity = 24/33 (72.73%), Postives = 29/33 (87.88%), Query Frame = 1 
Query:   13 FKRFVEIGRVAMISYGPHEGKLAVIIDVVDNNK 111
            FKRFVEIGRVA I++GPHEGKL  I+DV+D N+
Sbjct:   19 FKRFVEIGRVAFIAFGPHEGKLVAIVDVIDQNR 51
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BLAST of mRNA_F-distichus_contig99627.19404.1 vs. uniprot
Match: UPI001F07E008 (60S ribosomal protein L14 n=1 Tax=Hypomesus transpacificus TaxID=137520 RepID=UPI001F07E008)

HSP 1 Score: 57.0 bits (136), Expect = 3.540e-9
Identity = 23/33 (69.70%), Postives = 29/33 (87.88%), Query Frame = 1 
Query:   13 FKRFVEIGRVAMISYGPHEGKLAVIIDVVDNNK 111
            FKR+VEIGRVA +S+GPHEGKL  I+DV+D N+
Sbjct:    3 FKRYVEIGRVAFVSFGPHEGKLVAIVDVIDQNR 35
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BLAST of mRNA_F-distichus_contig99627.19404.1 vs. uniprot
Match: G1KBH2_ANOCA (60S ribosomal protein L14 n=2 Tax=Sauria TaxID=32561 RepID=G1KBH2_ANOCA)

HSP 1 Score: 57.0 bits (136), Expect = 3.670e-9
Identity = 24/37 (64.86%), Postives = 31/37 (83.78%), Query Frame = 1 
Query:    1 PMQGFKRFVEIGRVAMISYGPHEGKLAVIIDVVDNNK 111
            P++ FKR+VEIGRVA IS+GPH GKL  I+DV+D N+
Sbjct:    5 PIKVFKRYVEIGRVAYISFGPHAGKLVAIVDVIDQNR 41
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BLAST of mRNA_F-distichus_contig99627.19404.1 vs. uniprot
Match: A0A7J6BE03_AMEME (60S ribosomal protein L14 n=2 Tax=Siluroidei TaxID=1489793 RepID=A0A7J6BE03_AMEME)

HSP 1 Score: 57.0 bits (136), Expect = 3.740e-9
Identity = 24/33 (72.73%), Postives = 29/33 (87.88%), Query Frame = 1 
Query:   13 FKRFVEIGRVAMISYGPHEGKLAVIIDVVDNNK 111
            FKRFVEIGRVA I++GPHEGKL  I+DV+D N+
Sbjct:    3 FKRFVEIGRVAYIAFGPHEGKLVTIVDVIDQNR 35
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig99627.19404.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FI71_ECTSI4.120e-1076.47Ribosomal_L14e domain-containing protein n=2 Tax=E... [more]
A0A8J4UBA5_CLAMG8.320e-1072.7360S ribosomal protein L14 (Fragment) n=2 Tax=cellu... [more]
A0A835YLN7_9STRA8.560e-1079.41Ribosomal protein L14-domain-containing protein n=... [more]
A0A498N3B3_LABRO1.070e-975.7660S ribosomal protein L14 n=1 Tax=Labeo rohita Tax... [more]
UPI001E3D70B51.430e-972.73hypothetical protein n=1 Tax=Exiguobacterium auran... [more]
A9U2F2_PHYPA2.320e-972.73Predicted protein n=1 Tax=Physcomitrium patens Tax... [more]
A0A8C1M8H3_CYPCA3.420e-972.7360S ribosomal protein L14 n=1 Tax=Cyprinus carpio ... [more]
UPI001F07E0083.540e-969.7060S ribosomal protein L14 n=1 Tax=Hypomesus transp... [more]
G1KBH2_ANOCA3.670e-964.8660S ribosomal protein L14 n=2 Tax=Sauria TaxID=325... [more]
A0A7J6BE03_AMEME3.740e-972.7360S ribosomal protein L14 n=2 Tax=Siluroidei TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig99627contigF-distichus_contig99627:1813..1923 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.5
Seed ortholog evalue1.9e-07
Seed eggNOG ortholog2880.D7FI71
Preferred nameRPL14
KEGG koko:K02875,ko:K12867
KEGG Pathwayko03010,ko03040,map03010,map03040
KEGG ModuleM00177,M00179,M00355
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000184,GO:0000956,GO:0002181,GO:0003674,GO:0003676,GO:0003700,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005773,GO:0005774,GO:0005783,GO:0005789,GO:0005791,GO:0005829,GO:0005840,GO:0005844,GO:0005911,GO:0006139,GO:0006355,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006914,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009506,GO:0009507,GO:0009536,GO:0009719,GO:0009725,GO:0009733,GO:0009889,GO:0009892,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0010605,GO:0010629,GO:0010941,GO:0012505,GO:0015031,GO:0015833,GO:0015934,GO:0016020,GO:0016070,GO:0016071,GO:0016072,GO:0016236,GO:0019219,GO:0019222,GO:0019439,GO:0019538,GO:0022613,GO:0022625,GO:0022626,GO:0030054,GO:0030684,GO:0030687,GO:0030867,GO:0031090,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0031984,GO:0032991,GO:0033036,GO:0033365,GO:0034470,GO:0034613,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0042175,GO:0042221,GO:0042254,GO:0042273,GO:0042788,GO:0042886,GO:0042981,GO:0043043,GO:0043066,GO:0043067,GO:0043069,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043523,GO:0043524,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0046483,GO:0046700,GO:0046907,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051179,GO:0051234,GO:0051252,GO:0051641,GO:0051649,GO:0055044,GO:0060255,GO:0060548,GO:0061919,GO:0065007,GO:0070013,GO:0070727,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0072599,GO:0072657,GO:0080090,GO:0090150,GO:0090304,GO:0097159,GO:0098552,GO:0098554,GO:0098556,GO:0098562,GO:0098588,GO:0098805,GO:0098827,GO:0140110,GO:1901214,GO:1901215,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1903506,GO:1990904,GO:2000112,GO:2001141
EggNOG free text desc.ribosomal large subunit biogenesis
EggNOG OGsCOG2163@1,KOG3421@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko03019,ko03041
Exons1
Model size111
Cds size108
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931178.1157928-CDS-F-distichus_contig99627:1812..19201622931178.1157928-CDS-F-distichus_contig99627:1812..1920Fucus distichus monoicousCDSF-distichus_contig99627 1813..1920 -
1690886192.3564286-CDS-F-distichus_contig99627:1812..19201690886192.3564286-CDS-F-distichus_contig99627:1812..1920Fucus distichus monoicousCDSF-distichus_contig99627 1813..1920 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931178.1298115-UTR-F-distichus_contig99627:1920..19231622931178.1298115-UTR-F-distichus_contig99627:1920..1923Fucus distichus monoicousUTRF-distichus_contig99627 1921..1923 -
1690886192.3706026-UTR-F-distichus_contig99627:1920..19231690886192.3706026-UTR-F-distichus_contig99627:1920..1923Fucus distichus monoicousUTRF-distichus_contig99627 1921..1923 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig99627.19404.1prot_F-distichus_contig99627.19404.1Fucus distichus monoicouspolypeptideF-distichus_contig99627 1813..1920 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig99627.19404.1

>prot_F-distichus_contig99627.19404.1 ID=prot_F-distichus_contig99627.19404.1|Name=mRNA_F-distichus_contig99627.19404.1|organism=Fucus distichus monoicous|type=polypeptide|length=36bp
MQGFKRFVEIGRVAMISYGPHEGKLAVIIDVVDNNK
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mRNA from alignment at F-distichus_contig99627:1813..1923-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig99627.19404.1 ID=mRNA_F-distichus_contig99627.19404.1|Name=mRNA_F-distichus_contig99627.19404.1|organism=Fucus distichus monoicous|type=mRNA|length=111bp|location=Sequence derived from alignment at F-distichus_contig99627:1813..1923- (Fucus distichus monoicous)
CCCATGCAGGGCTTTAAGCGATTTGTGGAAATTGGCCGCGTGGCGATGAT
CAGCTACGGCCCCCACGAGGGAAAGCTCGCGGTTATCATCGATGTGGTCG
ACAACAACAAG
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Coding sequence (CDS) from alignment at F-distichus_contig99627:1813..1923-

>mRNA_F-distichus_contig99627.19404.1 ID=mRNA_F-distichus_contig99627.19404.1|Name=mRNA_F-distichus_contig99627.19404.1|organism=Fucus distichus monoicous|type=CDS|length=216bp|location=Sequence derived from alignment at F-distichus_contig99627:1813..1923- (Fucus distichus monoicous)
ATGCAGGGCTTTAAGCGATTTGTGGAAATTGGCCGCGTGGCGATGATCAG
CTACGGCCCCCACGAGGGAAAGCTCGCGGTTATCATCGATGTGGTCGACA
ACAACAAGATGCAGGGCTTTAAGCGATTTGTGGAAATTGGCCGCGTGGCG
ATGATCAGCTACGGCCCCCACGAGGGAAAGCTCGCGGTTATCATCGATGT
GGTCGACAACAACAAG
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